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Genes within 1Mb (chr1:55595763:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 794440 sc-eQTL 1.07e-01 0.139 0.0856 0.624 B L1
ENSG00000116133 DHCR24 708568 sc-eQTL 8.34e-01 0.0171 0.0814 0.624 B L1
ENSG00000162402 USP24 380399 sc-eQTL 8.58e-01 0.00891 0.0497 0.624 B L1
ENSG00000243725 TTC4 879902 sc-eQTL 8.20e-01 -0.019 0.0832 0.624 B L1
ENSG00000006555 TTC22 794440 sc-eQTL 6.77e-01 0.0286 0.0685 0.624 CD4T L1
ENSG00000162402 USP24 380399 sc-eQTL 9.98e-01 0.00013 0.0488 0.624 CD4T L1
ENSG00000243725 TTC4 879902 sc-eQTL 2.71e-01 0.0808 0.0732 0.624 CD4T L1
ENSG00000006555 TTC22 794440 sc-eQTL 1.83e-01 0.0781 0.0584 0.624 CD8T L1
ENSG00000162402 USP24 380399 sc-eQTL 7.59e-01 -0.0149 0.0485 0.624 CD8T L1
ENSG00000243725 TTC4 879902 sc-eQTL 6.20e-01 -0.0418 0.0841 0.624 CD8T L1
ENSG00000116133 DHCR24 708568 sc-eQTL 5.70e-01 -0.0441 0.0775 0.628 DC L1
ENSG00000162402 USP24 380399 sc-eQTL 7.71e-01 -0.0138 0.0475 0.628 DC L1
ENSG00000243725 TTC4 879902 sc-eQTL 7.98e-01 -0.0236 0.0923 0.628 DC L1
ENSG00000116133 DHCR24 708568 sc-eQTL 5.73e-01 0.0319 0.0565 0.624 Mono L1
ENSG00000162402 USP24 380399 sc-eQTL 2.80e-01 -0.0559 0.0516 0.624 Mono L1
ENSG00000243725 TTC4 879902 sc-eQTL 1.08e-01 0.146 0.0906 0.624 Mono L1
ENSG00000006555 TTC22 794440 sc-eQTL 9.09e-01 0.00885 0.0777 0.624 NK L1
ENSG00000116133 DHCR24 708568 sc-eQTL 7.07e-01 -0.0295 0.0784 0.624 NK L1
ENSG00000162398 LEXM 789700 sc-eQTL 6.26e-01 -0.0357 0.0733 0.624 NK L1
ENSG00000162402 USP24 380399 sc-eQTL 2.53e-01 0.0509 0.0443 0.624 NK L1
ENSG00000243725 TTC4 879902 sc-eQTL 5.80e-02 0.159 0.0834 0.624 NK L1
ENSG00000006555 TTC22 794440 sc-eQTL 5.41e-03 0.189 0.0674 0.624 Other_T L1
ENSG00000116133 DHCR24 708568 sc-eQTL 1.51e-01 -0.0764 0.053 0.624 Other_T L1
ENSG00000162402 USP24 380399 sc-eQTL 8.14e-01 -0.0148 0.0631 0.624 Other_T L1
ENSG00000243725 TTC4 879902 sc-eQTL 3.05e-01 0.0882 0.0857 0.624 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 794440 sc-eQTL 8.53e-01 0.0131 0.0707 0.63 B_Activated L2
ENSG00000116133 DHCR24 708568 sc-eQTL 1.47e-01 0.12 0.0825 0.63 B_Activated L2
ENSG00000162402 USP24 380399 sc-eQTL 5.77e-01 0.0505 0.0903 0.63 B_Activated L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.78e-01 -0.0762 0.0863 0.63 B_Activated L2
ENSG00000006555 TTC22 794440 sc-eQTL 8.77e-01 -0.0143 0.0926 0.622 B_Intermediate L2
ENSG00000116133 DHCR24 708568 sc-eQTL 4.48e-02 0.172 0.0851 0.622 B_Intermediate L2
ENSG00000162402 USP24 380399 sc-eQTL 3.49e-01 0.0635 0.0677 0.622 B_Intermediate L2
ENSG00000243725 TTC4 879902 sc-eQTL 2.44e-01 -0.102 0.087 0.622 B_Intermediate L2
ENSG00000006555 TTC22 794440 sc-eQTL 2.49e-01 0.101 0.0877 0.627 B_Memory L2
ENSG00000116133 DHCR24 708568 sc-eQTL 7.01e-01 0.0336 0.0873 0.627 B_Memory L2
ENSG00000162402 USP24 380399 sc-eQTL 1.12e-01 -0.114 0.0715 0.627 B_Memory L2
ENSG00000243725 TTC4 879902 sc-eQTL 8.58e-01 -0.0165 0.0922 0.627 B_Memory L2
ENSG00000006555 TTC22 794440 sc-eQTL 1.32e-01 0.137 0.0905 0.624 B_Naive1 L2
ENSG00000116133 DHCR24 708568 sc-eQTL 8.50e-01 -0.0162 0.0853 0.624 B_Naive1 L2
ENSG00000162402 USP24 380399 sc-eQTL 6.92e-01 0.0243 0.0612 0.624 B_Naive1 L2
ENSG00000243725 TTC4 879902 sc-eQTL 5.36e-01 -0.0516 0.0832 0.624 B_Naive1 L2
ENSG00000006555 TTC22 794440 sc-eQTL 9.91e-01 0.00107 0.0916 0.627 B_Naive2 L2
ENSG00000116133 DHCR24 708568 sc-eQTL 8.15e-01 -0.0187 0.0797 0.627 B_Naive2 L2
ENSG00000162402 USP24 380399 sc-eQTL 4.11e-01 0.055 0.0668 0.627 B_Naive2 L2
ENSG00000243725 TTC4 879902 sc-eQTL 7.47e-02 0.174 0.0973 0.627 B_Naive2 L2
ENSG00000006555 TTC22 794440 sc-eQTL 4.31e-01 -0.0694 0.0879 0.618 CD4_CTL L2
ENSG00000162402 USP24 380399 sc-eQTL 3.01e-01 0.0885 0.0854 0.618 CD4_CTL L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.27e-01 0.0939 0.0956 0.618 CD4_CTL L2
ENSG00000006555 TTC22 794440 sc-eQTL 8.16e-01 -0.0186 0.0802 0.624 CD4_Naive L2
ENSG00000162402 USP24 380399 sc-eQTL 9.68e-01 0.00211 0.0527 0.624 CD4_Naive L2
ENSG00000243725 TTC4 879902 sc-eQTL 1.26e-01 0.123 0.0798 0.624 CD4_Naive L2
ENSG00000006555 TTC22 794440 sc-eQTL 3.78e-01 0.0738 0.0835 0.624 CD4_TCM L2
ENSG00000162402 USP24 380399 sc-eQTL 4.78e-01 -0.0445 0.0627 0.624 CD4_TCM L2
ENSG00000243725 TTC4 879902 sc-eQTL 5.21e-01 0.0581 0.0903 0.624 CD4_TCM L2
ENSG00000006555 TTC22 794440 sc-eQTL 6.93e-01 0.038 0.0963 0.624 CD4_TEM L2
ENSG00000162402 USP24 380399 sc-eQTL 6.78e-01 0.0295 0.071 0.624 CD4_TEM L2
ENSG00000243725 TTC4 879902 sc-eQTL 2.10e-01 -0.118 0.0935 0.624 CD4_TEM L2
ENSG00000006555 TTC22 794440 sc-eQTL 3.06e-01 0.0773 0.0754 0.624 CD8_CTL L2
ENSG00000162402 USP24 380399 sc-eQTL 2.57e-01 -0.0665 0.0585 0.624 CD8_CTL L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.83e-02 0.181 0.0869 0.624 CD8_CTL L2
ENSG00000006555 TTC22 794440 sc-eQTL 1.21e-01 0.133 0.0856 0.624 CD8_Naive L2
ENSG00000162402 USP24 380399 sc-eQTL 9.93e-01 -0.000547 0.0629 0.624 CD8_Naive L2
ENSG00000243725 TTC4 879902 sc-eQTL 7.54e-01 -0.0289 0.092 0.624 CD8_Naive L2
ENSG00000006555 TTC22 794440 sc-eQTL 1.92e-01 0.121 0.0925 0.62 CD8_TCM L2
ENSG00000162402 USP24 380399 sc-eQTL 4.07e-01 0.0651 0.0784 0.62 CD8_TCM L2
ENSG00000243725 TTC4 879902 sc-eQTL 4.13e-01 0.0781 0.0953 0.62 CD8_TCM L2
ENSG00000006555 TTC22 794440 sc-eQTL 8.28e-01 -0.0199 0.0911 0.616 CD8_TEM L2
ENSG00000162402 USP24 380399 sc-eQTL 3.41e-01 -0.0885 0.0927 0.616 CD8_TEM L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.07e-01 -0.0964 0.0941 0.616 CD8_TEM L2
ENSG00000006555 TTC22 794440 sc-eQTL 4.03e-01 0.0683 0.0815 0.619 MAIT L2
ENSG00000116133 DHCR24 708568 sc-eQTL 1.65e-01 0.0839 0.0602 0.619 MAIT L2
ENSG00000162402 USP24 380399 sc-eQTL 6.88e-01 0.0295 0.0735 0.619 MAIT L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.85e-01 0.0738 0.0848 0.619 MAIT L2
ENSG00000006555 TTC22 794440 sc-eQTL 6.28e-01 0.0453 0.0933 0.624 NK_CD56bright L2
ENSG00000116133 DHCR24 708568 sc-eQTL 5.17e-01 0.0535 0.0824 0.624 NK_CD56bright L2
ENSG00000162398 LEXM 789700 sc-eQTL 9.50e-01 0.00532 0.0845 0.624 NK_CD56bright L2
ENSG00000162402 USP24 380399 sc-eQTL 2.74e-01 0.0795 0.0725 0.624 NK_CD56bright L2
ENSG00000243725 TTC4 879902 sc-eQTL 2.39e-02 0.206 0.0905 0.624 NK_CD56bright L2
ENSG00000006555 TTC22 794440 sc-eQTL 2.79e-01 -0.0835 0.077 0.623 NK_CD56dim L2
ENSG00000116133 DHCR24 708568 sc-eQTL 8.79e-02 -0.137 0.08 0.623 NK_CD56dim L2
ENSG00000162398 LEXM 789700 sc-eQTL 4.71e-01 -0.0572 0.0791 0.623 NK_CD56dim L2
ENSG00000162402 USP24 380399 sc-eQTL 6.51e-01 0.0228 0.0503 0.623 NK_CD56dim L2
ENSG00000243725 TTC4 879902 sc-eQTL 8.90e-02 0.146 0.0856 0.623 NK_CD56dim L2
ENSG00000006555 TTC22 794440 sc-eQTL 8.78e-01 0.0142 0.0923 0.614 NK_HLA L2
ENSG00000116133 DHCR24 708568 sc-eQTL 3.67e-01 -0.0813 0.0898 0.614 NK_HLA L2
ENSG00000162398 LEXM 789700 sc-eQTL 3.50e-01 -0.0818 0.0873 0.614 NK_HLA L2
ENSG00000162402 USP24 380399 sc-eQTL 6.90e-01 -0.0257 0.0642 0.614 NK_HLA L2
ENSG00000243725 TTC4 879902 sc-eQTL 6.77e-01 -0.04 0.0958 0.614 NK_HLA L2
ENSG00000006555 TTC22 794440 sc-eQTL 5.03e-01 0.056 0.0835 0.623 NK_cytokine L2
ENSG00000116133 DHCR24 708568 sc-eQTL 5.67e-01 0.0484 0.0845 0.623 NK_cytokine L2
ENSG00000162398 LEXM 789700 sc-eQTL 3.55e-01 0.0816 0.0879 0.623 NK_cytokine L2
ENSG00000162402 USP24 380399 sc-eQTL 1.21e-01 0.093 0.0597 0.623 NK_cytokine L2
ENSG00000243725 TTC4 879902 sc-eQTL 8.09e-02 0.155 0.0884 0.623 NK_cytokine L2
ENSG00000006555 TTC22 794440 sc-eQTL 3.29e-01 0.105 0.107 0.63 PB L2
ENSG00000116133 DHCR24 708568 sc-eQTL 2.13e-01 -0.118 0.0946 0.63 PB L2
ENSG00000162402 USP24 380399 sc-eQTL 7.52e-01 0.0365 0.115 0.63 PB L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.10e-01 -0.114 0.111 0.63 PB L2
ENSG00000006555 TTC22 794440 sc-eQTL 5.14e-01 -0.0553 0.0845 0.626 Pro_T L2
ENSG00000116133 DHCR24 708568 sc-eQTL 1.40e-01 -0.106 0.0716 0.626 Pro_T L2
ENSG00000162402 USP24 380399 sc-eQTL 8.08e-01 -0.0199 0.0816 0.626 Pro_T L2
ENSG00000243725 TTC4 879902 sc-eQTL 8.15e-01 -0.021 0.0896 0.626 Pro_T L2
ENSG00000006555 TTC22 794440 sc-eQTL 6.68e-01 0.0368 0.0857 0.624 Treg L2
ENSG00000162402 USP24 380399 sc-eQTL 8.11e-01 -0.0183 0.0764 0.624 Treg L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.83e-02 0.199 0.0953 0.624 Treg L2
ENSG00000116133 DHCR24 708568 sc-eQTL 7.99e-01 0.0195 0.0767 0.629 cDC L2
ENSG00000162402 USP24 380399 sc-eQTL 4.76e-01 -0.0674 0.0944 0.629 cDC L2
ENSG00000243725 TTC4 879902 sc-eQTL 8.49e-01 -0.0184 0.097 0.629 cDC L2
ENSG00000116133 DHCR24 708568 sc-eQTL 2.89e-01 0.0571 0.0537 0.624 cMono_IL1B L2
ENSG00000162402 USP24 380399 sc-eQTL 3.91e-01 -0.0522 0.0608 0.624 cMono_IL1B L2
ENSG00000243725 TTC4 879902 sc-eQTL 9.52e-01 0.0056 0.0931 0.624 cMono_IL1B L2
ENSG00000116133 DHCR24 708568 sc-eQTL 7.68e-01 0.0151 0.051 0.624 cMono_S100A L2
ENSG00000162402 USP24 380399 sc-eQTL 3.06e-01 -0.0774 0.0755 0.624 cMono_S100A L2
ENSG00000243725 TTC4 879902 sc-eQTL 2.20e-01 0.116 0.0944 0.624 cMono_S100A L2
ENSG00000006555 TTC22 794440 sc-eQTL 9.55e-06 0.371 0.0807 0.633 gdT L2
ENSG00000116133 DHCR24 708568 sc-eQTL 3.76e-01 -0.0854 0.0961 0.633 gdT L2
ENSG00000162402 USP24 380399 sc-eQTL 9.70e-01 0.00349 0.0926 0.633 gdT L2
ENSG00000243725 TTC4 879902 sc-eQTL 3.08e-01 0.111 0.108 0.633 gdT L2
ENSG00000116133 DHCR24 708568 sc-eQTL 1.36e-01 -0.104 0.0692 0.624 intMono L2
ENSG00000162402 USP24 380399 sc-eQTL 8.14e-01 0.0209 0.0886 0.624 intMono L2
ENSG00000243725 TTC4 879902 sc-eQTL 6.52e-01 0.0426 0.0943 0.624 intMono L2
ENSG00000116133 DHCR24 708568 sc-eQTL 5.83e-01 -0.0375 0.0682 0.629 ncMono L2
ENSG00000162402 USP24 380399 sc-eQTL 2.66e-01 0.0856 0.0767 0.629 ncMono L2
ENSG00000243725 TTC4 879902 sc-eQTL 5.54e-01 0.054 0.091 0.629 ncMono L2
ENSG00000116133 DHCR24 708568 sc-eQTL 1.40e-01 -0.122 0.0824 0.636 pDC L2
ENSG00000162402 USP24 380399 sc-eQTL 8.15e-01 0.0156 0.0666 0.636 pDC L2
ENSG00000243725 TTC4 879902 sc-eQTL 8.50e-01 -0.0199 0.105 0.636 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 794440 sc-eQTL 3.80e-01 0.0773 0.0879 0.624 B_Memory LOneK1K
ENSG00000116133 DHCR24 708568 sc-eQTL 6.63e-02 0.162 0.0877 0.624 B_Memory LOneK1K
ENSG00000162402 USP24 380399 sc-eQTL 7.68e-01 0.0187 0.0631 0.624 B_Memory LOneK1K
ENSG00000243725 TTC4 879902 sc-eQTL 1.08e-01 -0.14 0.0866 0.624 B_Memory LOneK1K
ENSG00000006555 TTC22 794440 sc-eQTL 1.52e-01 0.132 0.0916 0.624 B_Naive LOneK1K
ENSG00000116133 DHCR24 708568 sc-eQTL 9.22e-01 -0.00815 0.0829 0.624 B_Naive LOneK1K
ENSG00000162402 USP24 380399 sc-eQTL 5.11e-01 0.0386 0.0586 0.624 B_Naive LOneK1K
ENSG00000243725 TTC4 879902 sc-eQTL 5.19e-01 0.0564 0.0873 0.624 B_Naive LOneK1K
ENSG00000116133 DHCR24 708568 sc-eQTL 2.76e-01 0.0577 0.0528 0.624 CD14_Mono LOneK1K
ENSG00000162402 USP24 380399 sc-eQTL 4.77e-02 -0.114 0.0573 0.624 CD14_Mono LOneK1K
ENSG00000243725 TTC4 879902 sc-eQTL 2.49e-01 0.11 0.0956 0.624 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 708568 sc-eQTL 1.74e-01 -0.0887 0.065 0.627 CD16_Mono LOneK1K
ENSG00000162402 USP24 380399 sc-eQTL 3.24e-01 0.0724 0.0733 0.627 CD16_Mono LOneK1K
ENSG00000243725 TTC4 879902 sc-eQTL 9.86e-01 0.00165 0.0921 0.627 CD16_Mono LOneK1K
ENSG00000006555 TTC22 794440 sc-eQTL 7.00e-01 -0.0294 0.076 0.623 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 708568 sc-eQTL 5.01e-01 -0.0535 0.0794 0.623 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 789700 sc-eQTL 5.67e-01 -0.0428 0.0746 0.623 NK_CD56dim LOneK1K
ENSG00000162402 USP24 380399 sc-eQTL 1.50e-01 0.0681 0.0471 0.623 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 879902 sc-eQTL 1.08e-01 0.135 0.0838 0.623 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116133 DHCR24 708568 eQTL 0.0397 -0.0565 0.0274 0.0 0.0 0.388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina