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Genes within 1Mb (chr1:55576152:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 774829 sc-eQTL 1.01e-01 -0.214 0.13 0.891 B L1
ENSG00000116133 DHCR24 688957 sc-eQTL 6.42e-01 -0.0576 0.124 0.891 B L1
ENSG00000162402 USP24 360788 sc-eQTL 1.82e-01 0.1 0.0751 0.891 B L1
ENSG00000243725 TTC4 860291 sc-eQTL 2.69e-01 0.14 0.126 0.891 B L1
ENSG00000006555 TTC22 774829 sc-eQTL 9.53e-02 -0.171 0.102 0.891 CD4T L1
ENSG00000162402 USP24 360788 sc-eQTL 5.66e-01 -0.0419 0.0729 0.891 CD4T L1
ENSG00000243725 TTC4 860291 sc-eQTL 3.44e-01 0.104 0.11 0.891 CD4T L1
ENSG00000006555 TTC22 774829 sc-eQTL 9.38e-01 0.00684 0.0884 0.891 CD8T L1
ENSG00000162402 USP24 360788 sc-eQTL 1.99e-01 0.0938 0.0728 0.891 CD8T L1
ENSG00000243725 TTC4 860291 sc-eQTL 2.74e-01 -0.139 0.126 0.891 CD8T L1
ENSG00000116133 DHCR24 688957 sc-eQTL 7.53e-01 0.0375 0.119 0.887 DC L1
ENSG00000162402 USP24 360788 sc-eQTL 3.68e-01 0.0657 0.0728 0.887 DC L1
ENSG00000243725 TTC4 860291 sc-eQTL 5.58e-01 -0.0833 0.142 0.887 DC L1
ENSG00000116133 DHCR24 688957 sc-eQTL 9.49e-01 0.00547 0.0862 0.891 Mono L1
ENSG00000162402 USP24 360788 sc-eQTL 3.56e-01 0.0728 0.0787 0.891 Mono L1
ENSG00000243725 TTC4 860291 sc-eQTL 7.09e-01 0.0518 0.139 0.891 Mono L1
ENSG00000006555 TTC22 774829 sc-eQTL 7.36e-01 -0.0398 0.118 0.891 NK L1
ENSG00000116133 DHCR24 688957 sc-eQTL 5.27e-01 -0.0755 0.119 0.891 NK L1
ENSG00000162398 LEXM 770089 sc-eQTL 8.55e-01 0.0204 0.112 0.891 NK L1
ENSG00000162402 USP24 360788 sc-eQTL 4.01e-01 0.0568 0.0675 0.891 NK L1
ENSG00000243725 TTC4 860291 sc-eQTL 3.29e-01 -0.125 0.128 0.891 NK L1
ENSG00000006555 TTC22 774829 sc-eQTL 3.27e-01 -0.102 0.104 0.891 Other_T L1
ENSG00000116133 DHCR24 688957 sc-eQTL 2.56e-01 -0.0916 0.0804 0.891 Other_T L1
ENSG00000162402 USP24 360788 sc-eQTL 6.59e-01 0.0422 0.0955 0.891 Other_T L1
ENSG00000243725 TTC4 860291 sc-eQTL 4.81e-01 -0.0916 0.13 0.891 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 774829 sc-eQTL 6.52e-01 0.0496 0.11 0.89 B_Activated L2
ENSG00000116133 DHCR24 688957 sc-eQTL 1.25e-01 0.198 0.128 0.89 B_Activated L2
ENSG00000162402 USP24 360788 sc-eQTL 5.91e-01 -0.0756 0.141 0.89 B_Activated L2
ENSG00000243725 TTC4 860291 sc-eQTL 5.50e-02 -0.257 0.133 0.89 B_Activated L2
ENSG00000006555 TTC22 774829 sc-eQTL 1.29e-01 -0.214 0.141 0.891 B_Intermediate L2
ENSG00000116133 DHCR24 688957 sc-eQTL 2.78e-01 -0.142 0.131 0.891 B_Intermediate L2
ENSG00000162402 USP24 360788 sc-eQTL 3.30e-02 0.22 0.102 0.891 B_Intermediate L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.19e-02 0.27 0.132 0.891 B_Intermediate L2
ENSG00000006555 TTC22 774829 sc-eQTL 8.93e-01 -0.0181 0.134 0.89 B_Memory L2
ENSG00000116133 DHCR24 688957 sc-eQTL 6.13e-01 0.0675 0.133 0.89 B_Memory L2
ENSG00000162402 USP24 360788 sc-eQTL 2.10e-01 -0.138 0.11 0.89 B_Memory L2
ENSG00000243725 TTC4 860291 sc-eQTL 2.20e-01 -0.173 0.141 0.89 B_Memory L2
ENSG00000006555 TTC22 774829 sc-eQTL 4.11e-01 -0.116 0.141 0.891 B_Naive1 L2
ENSG00000116133 DHCR24 688957 sc-eQTL 9.51e-01 -0.00812 0.132 0.891 B_Naive1 L2
ENSG00000162402 USP24 360788 sc-eQTL 3.00e-01 0.0984 0.0947 0.891 B_Naive1 L2
ENSG00000243725 TTC4 860291 sc-eQTL 1.90e-03 0.398 0.126 0.891 B_Naive1 L2
ENSG00000006555 TTC22 774829 sc-eQTL 5.65e-01 0.0808 0.14 0.891 B_Naive2 L2
ENSG00000116133 DHCR24 688957 sc-eQTL 5.85e-01 -0.0669 0.122 0.891 B_Naive2 L2
ENSG00000162402 USP24 360788 sc-eQTL 9.17e-01 -0.0107 0.103 0.891 B_Naive2 L2
ENSG00000243725 TTC4 860291 sc-eQTL 9.56e-01 0.00825 0.15 0.891 B_Naive2 L2
ENSG00000006555 TTC22 774829 sc-eQTL 8.13e-01 0.0316 0.133 0.891 CD4_CTL L2
ENSG00000162402 USP24 360788 sc-eQTL 3.29e-01 0.127 0.129 0.891 CD4_CTL L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.44e-01 -0.111 0.145 0.891 CD4_CTL L2
ENSG00000006555 TTC22 774829 sc-eQTL 1.02e-01 -0.196 0.119 0.891 CD4_Naive L2
ENSG00000162402 USP24 360788 sc-eQTL 3.45e-01 -0.0743 0.0785 0.891 CD4_Naive L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.72e-01 0.0862 0.12 0.891 CD4_Naive L2
ENSG00000006555 TTC22 774829 sc-eQTL 3.00e-01 -0.131 0.126 0.891 CD4_TCM L2
ENSG00000162402 USP24 360788 sc-eQTL 3.88e-01 0.0818 0.0945 0.891 CD4_TCM L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.96e-01 0.0928 0.136 0.891 CD4_TCM L2
ENSG00000006555 TTC22 774829 sc-eQTL 5.40e-01 0.0891 0.145 0.891 CD4_TEM L2
ENSG00000162402 USP24 360788 sc-eQTL 8.04e-01 -0.0266 0.107 0.891 CD4_TEM L2
ENSG00000243725 TTC4 860291 sc-eQTL 9.85e-01 0.00267 0.142 0.891 CD4_TEM L2
ENSG00000006555 TTC22 774829 sc-eQTL 8.80e-01 -0.0175 0.116 0.891 CD8_CTL L2
ENSG00000162402 USP24 360788 sc-eQTL 8.60e-01 -0.0159 0.0903 0.891 CD8_CTL L2
ENSG00000243725 TTC4 860291 sc-eQTL 2.72e-01 -0.148 0.135 0.891 CD8_CTL L2
ENSG00000006555 TTC22 774829 sc-eQTL 8.63e-01 -0.0223 0.129 0.891 CD8_Naive L2
ENSG00000162402 USP24 360788 sc-eQTL 5.50e-01 0.0564 0.0941 0.891 CD8_Naive L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.65e-01 -0.101 0.138 0.891 CD8_Naive L2
ENSG00000006555 TTC22 774829 sc-eQTL 5.90e-01 0.0762 0.141 0.891 CD8_TCM L2
ENSG00000162402 USP24 360788 sc-eQTL 3.72e-01 0.107 0.119 0.891 CD8_TCM L2
ENSG00000243725 TTC4 860291 sc-eQTL 1.65e-01 -0.201 0.144 0.891 CD8_TCM L2
ENSG00000006555 TTC22 774829 sc-eQTL 4.22e-01 -0.11 0.136 0.895 CD8_TEM L2
ENSG00000162402 USP24 360788 sc-eQTL 6.21e-01 0.0689 0.139 0.895 CD8_TEM L2
ENSG00000243725 TTC4 860291 sc-eQTL 9.18e-01 0.0146 0.141 0.895 CD8_TEM L2
ENSG00000006555 TTC22 774829 sc-eQTL 9.58e-02 -0.208 0.124 0.892 MAIT L2
ENSG00000116133 DHCR24 688957 sc-eQTL 3.57e-01 0.0853 0.0924 0.892 MAIT L2
ENSG00000162402 USP24 360788 sc-eQTL 8.94e-01 0.015 0.113 0.892 MAIT L2
ENSG00000243725 TTC4 860291 sc-eQTL 8.96e-01 -0.017 0.13 0.892 MAIT L2
ENSG00000006555 TTC22 774829 sc-eQTL 3.52e-02 -0.297 0.14 0.891 NK_CD56bright L2
ENSG00000116133 DHCR24 688957 sc-eQTL 2.47e-01 -0.145 0.125 0.891 NK_CD56bright L2
ENSG00000162398 LEXM 770089 sc-eQTL 3.67e-01 -0.116 0.128 0.891 NK_CD56bright L2
ENSG00000162402 USP24 360788 sc-eQTL 8.46e-01 -0.0214 0.11 0.891 NK_CD56bright L2
ENSG00000243725 TTC4 860291 sc-eQTL 8.97e-01 -0.0181 0.139 0.891 NK_CD56bright L2
ENSG00000006555 TTC22 774829 sc-eQTL 7.35e-01 -0.0402 0.118 0.892 NK_CD56dim L2
ENSG00000116133 DHCR24 688957 sc-eQTL 7.09e-01 -0.0461 0.124 0.892 NK_CD56dim L2
ENSG00000162398 LEXM 770089 sc-eQTL 7.61e-01 0.037 0.122 0.892 NK_CD56dim L2
ENSG00000162402 USP24 360788 sc-eQTL 2.76e-01 0.0841 0.077 0.892 NK_CD56dim L2
ENSG00000243725 TTC4 860291 sc-eQTL 7.60e-01 -0.0404 0.132 0.892 NK_CD56dim L2
ENSG00000006555 TTC22 774829 sc-eQTL 4.88e-01 0.0989 0.142 0.893 NK_HLA L2
ENSG00000116133 DHCR24 688957 sc-eQTL 3.73e-01 -0.124 0.139 0.893 NK_HLA L2
ENSG00000162398 LEXM 770089 sc-eQTL 4.84e-01 0.0946 0.135 0.893 NK_HLA L2
ENSG00000162402 USP24 360788 sc-eQTL 8.13e-01 -0.0235 0.099 0.893 NK_HLA L2
ENSG00000243725 TTC4 860291 sc-eQTL 9.32e-01 0.0127 0.148 0.893 NK_HLA L2
ENSG00000006555 TTC22 774829 sc-eQTL 4.15e-01 0.103 0.126 0.892 NK_cytokine L2
ENSG00000116133 DHCR24 688957 sc-eQTL 4.61e-01 -0.0944 0.128 0.892 NK_cytokine L2
ENSG00000162398 LEXM 770089 sc-eQTL 8.91e-01 0.0183 0.133 0.892 NK_cytokine L2
ENSG00000162402 USP24 360788 sc-eQTL 8.72e-01 -0.0147 0.0909 0.892 NK_cytokine L2
ENSG00000243725 TTC4 860291 sc-eQTL 1.26e-01 -0.206 0.134 0.892 NK_cytokine L2
ENSG00000006555 TTC22 774829 sc-eQTL 2.92e-01 -0.171 0.162 0.885 PB L2
ENSG00000116133 DHCR24 688957 sc-eQTL 7.00e-01 0.0557 0.144 0.885 PB L2
ENSG00000162402 USP24 360788 sc-eQTL 9.63e-01 -0.00812 0.175 0.885 PB L2
ENSG00000243725 TTC4 860291 sc-eQTL 7.43e-01 -0.0557 0.169 0.885 PB L2
ENSG00000006555 TTC22 774829 sc-eQTL 6.92e-02 0.232 0.127 0.889 Pro_T L2
ENSG00000116133 DHCR24 688957 sc-eQTL 6.64e-01 -0.0474 0.109 0.889 Pro_T L2
ENSG00000162402 USP24 360788 sc-eQTL 2.15e-01 0.153 0.123 0.889 Pro_T L2
ENSG00000243725 TTC4 860291 sc-eQTL 2.33e-01 -0.162 0.135 0.889 Pro_T L2
ENSG00000006555 TTC22 774829 sc-eQTL 7.33e-01 0.0435 0.127 0.891 Treg L2
ENSG00000162402 USP24 360788 sc-eQTL 2.14e-01 0.141 0.113 0.891 Treg L2
ENSG00000243725 TTC4 860291 sc-eQTL 8.78e-01 -0.022 0.143 0.891 Treg L2
ENSG00000116133 DHCR24 688957 sc-eQTL 9.07e-01 -0.0135 0.116 0.89 cDC L2
ENSG00000162402 USP24 360788 sc-eQTL 6.08e-02 0.266 0.141 0.89 cDC L2
ENSG00000243725 TTC4 860291 sc-eQTL 7.44e-01 0.0478 0.146 0.89 cDC L2
ENSG00000116133 DHCR24 688957 sc-eQTL 3.98e-01 -0.0711 0.0839 0.891 cMono_IL1B L2
ENSG00000162402 USP24 360788 sc-eQTL 4.08e-02 0.194 0.0942 0.891 cMono_IL1B L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.81e-01 0.103 0.145 0.891 cMono_IL1B L2
ENSG00000116133 DHCR24 688957 sc-eQTL 2.28e-01 0.0959 0.0793 0.891 cMono_S100A L2
ENSG00000162402 USP24 360788 sc-eQTL 4.96e-01 -0.0805 0.118 0.891 cMono_S100A L2
ENSG00000243725 TTC4 860291 sc-eQTL 5.28e-01 0.0934 0.148 0.891 cMono_S100A L2
ENSG00000006555 TTC22 774829 sc-eQTL 4.58e-01 0.0947 0.127 0.888 gdT L2
ENSG00000116133 DHCR24 688957 sc-eQTL 8.88e-01 0.02 0.142 0.888 gdT L2
ENSG00000162402 USP24 360788 sc-eQTL 1.33e-01 0.205 0.136 0.888 gdT L2
ENSG00000243725 TTC4 860291 sc-eQTL 7.44e-01 -0.0523 0.16 0.888 gdT L2
ENSG00000116133 DHCR24 688957 sc-eQTL 9.51e-01 -0.00654 0.106 0.893 intMono L2
ENSG00000162402 USP24 360788 sc-eQTL 8.91e-01 0.0185 0.135 0.893 intMono L2
ENSG00000243725 TTC4 860291 sc-eQTL 1.44e-01 -0.21 0.143 0.893 intMono L2
ENSG00000116133 DHCR24 688957 sc-eQTL 4.22e-01 0.0816 0.101 0.887 ncMono L2
ENSG00000162402 USP24 360788 sc-eQTL 3.43e-01 -0.109 0.114 0.887 ncMono L2
ENSG00000243725 TTC4 860291 sc-eQTL 4.44e-01 0.104 0.135 0.887 ncMono L2
ENSG00000116133 DHCR24 688957 sc-eQTL 8.27e-01 -0.0267 0.122 0.881 pDC L2
ENSG00000162402 USP24 360788 sc-eQTL 9.70e-01 -0.00364 0.0978 0.881 pDC L2
ENSG00000243725 TTC4 860291 sc-eQTL 7.62e-01 -0.0469 0.154 0.881 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 774829 sc-eQTL 1.20e-01 -0.209 0.134 0.891 B_Memory LOneK1K
ENSG00000116133 DHCR24 688957 sc-eQTL 3.88e-01 -0.117 0.135 0.891 B_Memory LOneK1K
ENSG00000162402 USP24 360788 sc-eQTL 5.86e-01 0.0526 0.0965 0.891 B_Memory LOneK1K
ENSG00000243725 TTC4 860291 sc-eQTL 4.88e-01 0.0924 0.133 0.891 B_Memory LOneK1K
ENSG00000006555 TTC22 774829 sc-eQTL 8.37e-01 -0.0293 0.142 0.891 B_Naive LOneK1K
ENSG00000116133 DHCR24 688957 sc-eQTL 9.96e-01 0.000701 0.128 0.891 B_Naive LOneK1K
ENSG00000162402 USP24 360788 sc-eQTL 2.31e-01 0.109 0.0906 0.891 B_Naive LOneK1K
ENSG00000243725 TTC4 860291 sc-eQTL 1.69e-02 0.322 0.134 0.891 B_Naive LOneK1K
ENSG00000116133 DHCR24 688957 sc-eQTL 8.81e-01 -0.0121 0.081 0.891 CD14_Mono LOneK1K
ENSG00000162402 USP24 360788 sc-eQTL 8.82e-02 0.151 0.0879 0.891 CD14_Mono LOneK1K
ENSG00000243725 TTC4 860291 sc-eQTL 5.63e-01 0.085 0.147 0.891 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 688957 sc-eQTL 6.29e-01 0.0479 0.0991 0.89 CD16_Mono LOneK1K
ENSG00000162402 USP24 360788 sc-eQTL 6.63e-01 -0.0487 0.112 0.89 CD16_Mono LOneK1K
ENSG00000243725 TTC4 860291 sc-eQTL 9.05e-01 0.0168 0.14 0.89 CD16_Mono LOneK1K
ENSG00000006555 TTC22 774829 sc-eQTL 6.18e-01 0.0577 0.116 0.892 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 688957 sc-eQTL 4.09e-01 -0.0998 0.121 0.892 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 770089 sc-eQTL 8.08e-01 0.0276 0.114 0.892 NK_CD56dim LOneK1K
ENSG00000162402 USP24 360788 sc-eQTL 4.54e-01 0.0539 0.0719 0.892 NK_CD56dim LOneK1K
ENSG00000243725 TTC4 860291 sc-eQTL 2.15e-01 -0.159 0.128 0.892 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000006555 TTC22 774829 eQTL 0.0491 -0.0447 0.0227 0.0 0.0 0.116
ENSG00000169174 PCSK9 536604 eQTL 0.0134 0.0625 0.0252 0.00116 0.0 0.116

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184313 \N 934398 2.74e-07 1.19e-07 3.69e-08 1.8e-07 9.16e-08 9.8e-08 1.49e-07 5.2e-08 1.44e-07 4.94e-08 1.6e-07 8.55e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.98e-08 1.21e-07 5.39e-08 4e-08 1.08e-07 1.27e-07 1.34e-07 3.49e-08 1.4e-07 1.14e-07 1.06e-07 9.57e-08 1.08e-07 1.07e-07 9.91e-08 3.65e-08 3.61e-08 8.44e-08 8.38e-08 3.93e-08 5.08e-08 9.36e-08 6.54e-08 3.98e-08 4.94e-08 1.35e-07 5.22e-08 1.11e-08 4.92e-08 1.99e-08 1.21e-07 3.79e-09 4.94e-08