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Genes within 1Mb (chr1:53630717:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -259081 sc-eQTL 2.96e-01 -0.224 0.214 0.05 NK_HLA L2
ENSG00000058804 NDC1 -207746 sc-eQTL 6.99e-01 -0.0828 0.213 0.05 NK_HLA L2
ENSG00000081870 HSPB11 -315212 sc-eQTL 4.86e-01 -0.142 0.203 0.05 NK_HLA L2
ENSG00000116171 SCP2 703441 sc-eQTL 4.70e-01 -0.121 0.167 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 -422867 sc-eQTL 9.55e-01 -0.0112 0.196 0.05 NK_HLA L2
ENSG00000116209 TMEM59 -422787 sc-eQTL 4.56e-01 0.146 0.195 0.05 NK_HLA L2
ENSG00000116212 LRRC42 -315368 sc-eQTL 3.02e-01 0.218 0.211 0.05 NK_HLA L2
ENSG00000116221 MRPL37 -553324 sc-eQTL 7.01e-01 0.0826 0.215 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 703505 sc-eQTL 2.74e-01 0.235 0.214 0.05 NK_HLA L2
ENSG00000157184 CPT2 433925 sc-eQTL 2.42e-01 -0.233 0.198 0.05 NK_HLA L2
ENSG00000157193 LRP8 302248 sc-eQTL 3.46e-01 0.19 0.201 0.05 NK_HLA L2
ENSG00000157216 SSBP3 -782762 sc-eQTL 4.80e-01 -0.124 0.175 0.05 NK_HLA L2
ENSG00000162377 COA7 932370 sc-eQTL 1.04e-01 0.308 0.189 0.05 NK_HLA L2
ENSG00000162378 ZYG11B 904264 sc-eQTL 6.97e-01 0.0815 0.209 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 488085 sc-eQTL 3.15e-01 0.193 0.192 0.05 NK_HLA L2
ENSG00000162384 CZIB 410083 sc-eQTL 7.70e-01 0.059 0.202 0.05 NK_HLA L2
ENSG00000162385 MAGOH 392199 sc-eQTL 9.55e-01 0.011 0.193 0.05 NK_HLA L2
ENSG00000174348 PODN 568665 sc-eQTL 3.19e-01 0.2 0.2 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A 997549 sc-eQTL 2.48e-01 -0.245 0.211 0.05 NK_HLA L2
ENSG00000058799 YIPF1 -259081 sc-eQTL 6.98e-01 0.0801 0.206 0.051 cDC L2
ENSG00000058804 NDC1 -207746 sc-eQTL 6.25e-01 -0.102 0.209 0.051 cDC L2
ENSG00000081870 HSPB11 -315212 sc-eQTL 4.93e-02 0.432 0.218 0.051 cDC L2
ENSG00000116171 SCP2 703441 sc-eQTL 3.83e-02 -0.377 0.181 0.051 cDC L2
ENSG00000116205 TCEANC2 -422867 sc-eQTL 5.77e-02 -0.381 0.199 0.051 cDC L2
ENSG00000116209 TMEM59 -422787 sc-eQTL 2.33e-01 0.204 0.171 0.051 cDC L2
ENSG00000116212 LRRC42 -315368 sc-eQTL 2.65e-02 0.462 0.206 0.051 cDC L2
ENSG00000116221 MRPL37 -553324 sc-eQTL 7.31e-01 0.0753 0.219 0.051 cDC L2
ENSG00000121310 ECHDC2 703505 sc-eQTL 5.30e-01 0.133 0.212 0.051 cDC L2
ENSG00000157184 CPT2 433925 sc-eQTL 6.12e-01 0.108 0.213 0.051 cDC L2
ENSG00000157193 LRP8 302248 sc-eQTL 9.40e-01 0.0163 0.217 0.051 cDC L2
ENSG00000157216 SSBP3 -782762 sc-eQTL 1.67e-01 -0.279 0.201 0.051 cDC L2
ENSG00000162377 COA7 932370 sc-eQTL 5.43e-01 -0.128 0.21 0.051 cDC L2
ENSG00000162378 ZYG11B 904264 sc-eQTL 3.05e-01 0.227 0.22 0.051 cDC L2
ENSG00000162384 CZIB 410083 sc-eQTL 9.85e-01 -0.00367 0.199 0.051 cDC L2
ENSG00000162385 MAGOH 392199 sc-eQTL 2.76e-01 0.198 0.182 0.051 cDC L2
ENSG00000162390 ACOT11 -911540 sc-eQTL 6.75e-01 -0.0788 0.188 0.051 cDC L2
ENSG00000215883 CYB5RL -569319 sc-eQTL 1.02e-01 0.295 0.179 0.051 cDC L2
ENSG00000230138 LINC02812 262472 sc-eQTL 6.02e-01 0.0977 0.187 0.051 cDC L2
ENSG00000058799 YIPF1 -259081 sc-eQTL 5.00e-01 0.159 0.236 0.055 gdT L2
ENSG00000058804 NDC1 -207746 sc-eQTL 9.50e-01 -0.0144 0.231 0.055 gdT L2
ENSG00000081870 HSPB11 -315212 sc-eQTL 9.01e-01 -0.0327 0.263 0.055 gdT L2
ENSG00000116171 SCP2 703441 sc-eQTL 2.48e-01 -0.208 0.18 0.055 gdT L2
ENSG00000116205 TCEANC2 -422867 sc-eQTL 5.77e-01 0.118 0.212 0.055 gdT L2
ENSG00000116209 TMEM59 -422787 sc-eQTL 4.16e-02 0.436 0.212 0.055 gdT L2
ENSG00000116212 LRRC42 -315368 sc-eQTL 7.70e-01 -0.0741 0.253 0.055 gdT L2
ENSG00000116221 MRPL37 -553324 sc-eQTL 1.22e-01 -0.38 0.245 0.055 gdT L2
ENSG00000121310 ECHDC2 703505 sc-eQTL 9.91e-01 0.00296 0.261 0.055 gdT L2
ENSG00000157184 CPT2 433925 sc-eQTL 7.74e-01 0.0716 0.249 0.055 gdT L2
ENSG00000157193 LRP8 302248 sc-eQTL 6.34e-01 0.117 0.244 0.055 gdT L2
ENSG00000157216 SSBP3 -782762 sc-eQTL 1.49e-01 -0.217 0.15 0.055 gdT L2
ENSG00000162377 COA7 932370 sc-eQTL 2.48e-01 0.253 0.218 0.055 gdT L2
ENSG00000162378 ZYG11B 904264 sc-eQTL 3.59e-01 0.219 0.238 0.055 gdT L2
ENSG00000162383 SLC1A7 488085 sc-eQTL 5.75e-01 0.0941 0.167 0.055 gdT L2
ENSG00000162384 CZIB 410083 sc-eQTL 8.78e-01 0.0356 0.233 0.055 gdT L2
ENSG00000162385 MAGOH 392199 sc-eQTL 3.78e-01 -0.209 0.237 0.055 gdT L2
ENSG00000182183 SHISAL2A 997549 sc-eQTL 2.60e-01 -0.254 0.225 0.055 gdT L2
ENSG00000215883 CYB5RL -569319 sc-eQTL 5.41e-02 0.404 0.208 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000219102 HNRNPA3P12 -345314 eQTL 0.0363 0.196 0.0934 0.0 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina