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Genes within 1Mb (chr1:53312292:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -577506 sc-eQTL 9.92e-01 -0.00208 0.216 0.05 NK_HLA L2
ENSG00000058804 NDC1 -526171 sc-eQTL 5.94e-01 0.115 0.215 0.05 NK_HLA L2
ENSG00000081870 HSPB11 -633637 sc-eQTL 4.58e-02 -0.407 0.203 0.05 NK_HLA L2
ENSG00000116157 GPX7 709921 sc-eQTL 2.89e-01 0.223 0.21 0.05 NK_HLA L2
ENSG00000116171 SCP2 385016 sc-eQTL 5.82e-01 -0.0927 0.168 0.05 NK_HLA L2
ENSG00000116205 TCEANC2 -741292 sc-eQTL 8.50e-01 -0.0375 0.198 0.05 NK_HLA L2
ENSG00000116209 TMEM59 -741212 sc-eQTL 8.20e-01 0.0449 0.197 0.05 NK_HLA L2
ENSG00000116212 LRRC42 -633793 sc-eQTL 2.93e-01 -0.224 0.213 0.05 NK_HLA L2
ENSG00000116221 MRPL37 -871749 sc-eQTL 3.12e-01 0.219 0.216 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 385080 sc-eQTL 7.77e-01 -0.0614 0.216 0.05 NK_HLA L2
ENSG00000134744 TUT4 758805 sc-eQTL 9.89e-01 -0.00302 0.214 0.05 NK_HLA L2
ENSG00000134748 PRPF38A 907690 sc-eQTL 9.02e-01 0.0267 0.216 0.05 NK_HLA L2
ENSG00000154222 CC2D1B 946099 sc-eQTL 3.40e-01 0.214 0.223 0.05 NK_HLA L2
ENSG00000157184 CPT2 115500 sc-eQTL 5.60e-03 -0.551 0.197 0.05 NK_HLA L2
ENSG00000157193 LRP8 -16177 sc-eQTL 4.91e-01 0.14 0.203 0.05 NK_HLA L2
ENSG00000162377 COA7 613945 sc-eQTL 8.51e-01 0.036 0.191 0.05 NK_HLA L2
ENSG00000162378 ZYG11B 585839 sc-eQTL 2.44e-01 -0.246 0.21 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 169660 sc-eQTL 4.05e-01 -0.161 0.193 0.05 NK_HLA L2
ENSG00000162384 CZIB 91658 sc-eQTL 8.34e-01 -0.0426 0.203 0.05 NK_HLA L2
ENSG00000162385 MAGOH 73774 sc-eQTL 3.16e-02 0.417 0.192 0.05 NK_HLA L2
ENSG00000174348 PODN 250240 sc-eQTL 1.93e-01 -0.263 0.201 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A 679124 sc-eQTL 8.21e-01 -0.0483 0.213 0.05 NK_HLA L2
ENSG00000058799 YIPF1 -577506 sc-eQTL 4.70e-01 0.134 0.185 0.05 Pro_T L2
ENSG00000058804 NDC1 -526171 sc-eQTL 8.99e-02 0.248 0.145 0.05 Pro_T L2
ENSG00000081870 HSPB11 -633637 sc-eQTL 4.20e-01 -0.106 0.132 0.05 Pro_T L2
ENSG00000085840 ORC1 907869 sc-eQTL 9.63e-01 0.00675 0.144 0.05 Pro_T L2
ENSG00000116157 GPX7 709921 sc-eQTL 8.88e-01 -0.0245 0.173 0.05 Pro_T L2
ENSG00000116171 SCP2 385016 sc-eQTL 9.42e-01 0.0129 0.177 0.05 Pro_T L2
ENSG00000116205 TCEANC2 -741292 sc-eQTL 8.52e-01 -0.0379 0.203 0.05 Pro_T L2
ENSG00000116209 TMEM59 -741212 sc-eQTL 8.43e-01 -0.0279 0.141 0.05 Pro_T L2
ENSG00000116212 LRRC42 -633793 sc-eQTL 9.26e-01 -0.0168 0.181 0.05 Pro_T L2
ENSG00000116221 MRPL37 -871749 sc-eQTL 3.26e-01 0.135 0.137 0.05 Pro_T L2
ENSG00000121310 ECHDC2 385080 sc-eQTL 4.73e-01 -0.139 0.194 0.05 Pro_T L2
ENSG00000134744 TUT4 758805 sc-eQTL 2.14e-01 -0.279 0.224 0.05 Pro_T L2
ENSG00000134748 PRPF38A 907690 sc-eQTL 4.03e-01 0.156 0.186 0.05 Pro_T L2
ENSG00000154222 CC2D1B 946099 sc-eQTL 5.90e-01 -0.121 0.224 0.05 Pro_T L2
ENSG00000157184 CPT2 115500 sc-eQTL 4.42e-02 -0.381 0.188 0.05 Pro_T L2
ENSG00000157193 LRP8 -16177 sc-eQTL 8.59e-01 0.0336 0.189 0.05 Pro_T L2
ENSG00000162377 COA7 613945 sc-eQTL 8.85e-01 -0.0262 0.181 0.05 Pro_T L2
ENSG00000162378 ZYG11B 585839 sc-eQTL 3.76e-02 -0.458 0.219 0.05 Pro_T L2
ENSG00000162383 SLC1A7 169660 sc-eQTL 3.29e-01 0.175 0.179 0.05 Pro_T L2
ENSG00000162384 CZIB 91658 sc-eQTL 1.71e-01 -0.292 0.212 0.05 Pro_T L2
ENSG00000162385 MAGOH 73774 sc-eQTL 8.75e-01 -0.0272 0.173 0.05 Pro_T L2
ENSG00000182183 SHISAL2A 679124 sc-eQTL 7.57e-01 0.0638 0.206 0.05 Pro_T L2
ENSG00000215883 CYB5RL -887744 sc-eQTL 7.09e-01 -0.0696 0.186 0.05 Pro_T L2
ENSG00000058799 YIPF1 -577506 sc-eQTL 6.34e-02 0.403 0.216 0.051 cDC L2
ENSG00000058804 NDC1 -526171 sc-eQTL 1.41e-01 -0.325 0.22 0.051 cDC L2
ENSG00000081870 HSPB11 -633637 sc-eQTL 5.53e-01 0.138 0.233 0.051 cDC L2
ENSG00000116157 GPX7 709921 sc-eQTL 7.38e-01 0.0661 0.197 0.051 cDC L2
ENSG00000116171 SCP2 385016 sc-eQTL 4.23e-01 0.155 0.193 0.051 cDC L2
ENSG00000116205 TCEANC2 -741292 sc-eQTL 2.82e-01 -0.229 0.212 0.051 cDC L2
ENSG00000116209 TMEM59 -741212 sc-eQTL 1.18e-01 0.282 0.18 0.051 cDC L2
ENSG00000116212 LRRC42 -633793 sc-eQTL 9.59e-01 0.0114 0.221 0.051 cDC L2
ENSG00000116221 MRPL37 -871749 sc-eQTL 4.70e-01 0.167 0.231 0.051 cDC L2
ENSG00000121310 ECHDC2 385080 sc-eQTL 1.26e-01 0.343 0.223 0.051 cDC L2
ENSG00000134744 TUT4 758805 sc-eQTL 9.16e-01 0.0247 0.234 0.051 cDC L2
ENSG00000134748 PRPF38A 907690 sc-eQTL 7.29e-01 0.0747 0.215 0.051 cDC L2
ENSG00000154222 CC2D1B 946099 sc-eQTL 4.25e-01 -0.187 0.233 0.051 cDC L2
ENSG00000157184 CPT2 115500 sc-eQTL 9.27e-01 0.0207 0.225 0.051 cDC L2
ENSG00000157193 LRP8 -16177 sc-eQTL 4.27e-01 0.183 0.229 0.051 cDC L2
ENSG00000162377 COA7 613945 sc-eQTL 3.69e-01 -0.199 0.221 0.051 cDC L2
ENSG00000162378 ZYG11B 585839 sc-eQTL 1.71e-01 0.32 0.232 0.051 cDC L2
ENSG00000162384 CZIB 91658 sc-eQTL 7.00e-01 0.0812 0.21 0.051 cDC L2
ENSG00000162385 MAGOH 73774 sc-eQTL 4.73e-01 0.138 0.192 0.051 cDC L2
ENSG00000215883 CYB5RL -887744 sc-eQTL 1.02e-01 0.312 0.19 0.051 cDC L2
ENSG00000230138 LINC02812 -55953 sc-eQTL 5.66e-01 -0.114 0.198 0.051 cDC L2
ENSG00000058799 YIPF1 -577506 sc-eQTL 3.74e-02 0.495 0.236 0.051 pDC L2
ENSG00000058804 NDC1 -526171 sc-eQTL 1.48e-01 -0.344 0.237 0.051 pDC L2
ENSG00000081870 HSPB11 -633637 sc-eQTL 3.73e-01 0.187 0.209 0.051 pDC L2
ENSG00000116157 GPX7 709921 sc-eQTL 2.86e-01 0.198 0.185 0.051 pDC L2
ENSG00000116171 SCP2 385016 sc-eQTL 7.97e-01 0.0572 0.222 0.051 pDC L2
ENSG00000116205 TCEANC2 -741292 sc-eQTL 4.18e-01 -0.187 0.231 0.051 pDC L2
ENSG00000116209 TMEM59 -741212 sc-eQTL 1.89e-01 0.242 0.184 0.051 pDC L2
ENSG00000116212 LRRC42 -633793 sc-eQTL 9.54e-02 -0.382 0.228 0.051 pDC L2
ENSG00000116221 MRPL37 -871749 sc-eQTL 9.53e-01 0.0146 0.245 0.051 pDC L2
ENSG00000121310 ECHDC2 385080 sc-eQTL 7.24e-01 0.0851 0.24 0.051 pDC L2
ENSG00000134744 TUT4 758805 sc-eQTL 4.98e-01 0.135 0.199 0.051 pDC L2
ENSG00000134748 PRPF38A 907690 sc-eQTL 3.19e-01 -0.255 0.255 0.051 pDC L2
ENSG00000154222 CC2D1B 946099 sc-eQTL 4.92e-01 0.168 0.244 0.051 pDC L2
ENSG00000157184 CPT2 115500 sc-eQTL 6.89e-03 -0.618 0.226 0.051 pDC L2
ENSG00000157193 LRP8 -16177 sc-eQTL 4.36e-01 -0.159 0.204 0.051 pDC L2
ENSG00000162377 COA7 613945 sc-eQTL 8.59e-01 -0.0351 0.198 0.051 pDC L2
ENSG00000162378 ZYG11B 585839 sc-eQTL 3.27e-02 0.506 0.235 0.051 pDC L2
ENSG00000162384 CZIB 91658 sc-eQTL 1.31e-01 0.361 0.237 0.051 pDC L2
ENSG00000162385 MAGOH 73774 sc-eQTL 5.91e-01 0.116 0.214 0.051 pDC L2
ENSG00000215883 CYB5RL -887744 sc-eQTL 5.48e-01 0.127 0.211 0.051 pDC L2
ENSG00000230138 LINC02812 -55953 sc-eQTL 2.21e-01 0.202 0.164 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162378 ZYG11B 585839 eQTL 0.00919 0.115 0.0439 0.0 0.0 0.051

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000219102 \N -663739 3.92e-07 1.92e-07 8.02e-08 2.45e-07 1.02e-07 1.19e-07 2.86e-07 7.65e-08 2.12e-07 1.37e-07 2.38e-07 1.82e-07 3.18e-07 8.54e-08 7.79e-08 1.17e-07 8.64e-08 2.75e-07 8.68e-08 7.05e-08 1.39e-07 2.15e-07 2e-07 4.25e-08 2.74e-07 1.94e-07 1.39e-07 1.46e-07 1.54e-07 1.69e-07 1.39e-07 5.24e-08 4.76e-08 9.61e-08 8.75e-08 5.14e-08 5.76e-08 5.71e-08 5.69e-08 8.2e-08 4.78e-08 2e-07 3.2e-08 7.35e-09 4.36e-08 1.01e-08 9.1e-08 0.0 4.82e-08
ENSG00000230138 \N -55953 1.05e-05 1.18e-05 2.57e-06 6.69e-06 2.34e-06 5.46e-06 1.27e-05 2.25e-06 1.09e-05 6.03e-06 1.45e-05 6.06e-06 1.91e-05 3.99e-06 3.58e-06 7.65e-06 6.29e-06 9.99e-06 3.64e-06 3.3e-06 6.54e-06 1.18e-05 1.03e-05 3.99e-06 1.81e-05 4.58e-06 6.97e-06 5.13e-06 1.34e-05 1.12e-05 7.4e-06 1e-06 1.43e-06 3.85e-06 5.32e-06 3.11e-06 1.71e-06 2.16e-06 2.42e-06 1.84e-06 1.5e-06 1.45e-05 1.6e-06 3.6e-07 1.37e-06 1.96e-06 1.99e-06 8.24e-07 8.91e-07