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Genes within 1Mb (chr1:54633749:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 743951 sc-eQTL 8.77e-01 -0.0331 0.214 0.052 DC L1
ENSG00000058804 NDC1 795286 sc-eQTL 9.24e-01 0.0189 0.196 0.052 DC L1
ENSG00000081870 HSPB11 687820 sc-eQTL 3.56e-01 -0.171 0.184 0.052 DC L1
ENSG00000116133 DHCR24 -253446 sc-eQTL 7.95e-01 0.0451 0.174 0.052 DC L1
ENSG00000116205 TCEANC2 580165 sc-eQTL 4.06e-02 -0.397 0.193 0.052 DC L1
ENSG00000116209 TMEM59 580245 sc-eQTL 4.50e-01 -0.116 0.153 0.052 DC L1
ENSG00000116212 LRRC42 687664 sc-eQTL 3.64e-01 0.18 0.198 0.052 DC L1
ENSG00000116221 MRPL37 449708 sc-eQTL 5.06e-01 -0.137 0.205 0.052 DC L1
ENSG00000157216 SSBP3 220270 sc-eQTL 9.71e-02 0.303 0.182 0.052 DC L1
ENSG00000162390 ACOT11 91492 sc-eQTL 3.16e-01 -0.177 0.176 0.052 DC L1
ENSG00000162402 USP24 -581615 sc-eQTL 6.37e-01 -0.0501 0.106 0.052 DC L1
ENSG00000215883 CYB5RL 433713 sc-eQTL 9.02e-01 0.0238 0.192 0.052 DC L1
ENSG00000243725 TTC4 -82112 sc-eQTL 5.06e-01 -0.137 0.206 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -167574 sc-eQTL 5.64e-01 0.115 0.199 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 743951 sc-eQTL 7.02e-01 0.0811 0.212 0.05 CD4_CTL L2
ENSG00000058804 NDC1 795286 sc-eQTL 6.50e-01 0.0946 0.208 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 687820 sc-eQTL 3.47e-02 0.457 0.215 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 7.07e-01 0.0773 0.205 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 580245 sc-eQTL 1.81e-01 -0.249 0.186 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 687664 sc-eQTL 7.63e-01 -0.0625 0.207 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 449708 sc-eQTL 9.26e-01 0.0214 0.23 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 220270 sc-eQTL 5.06e-01 0.094 0.141 0.05 CD4_CTL L2
ENSG00000162402 USP24 -581615 sc-eQTL 6.63e-01 0.0847 0.194 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -82112 sc-eQTL 6.77e-01 0.0906 0.217 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -167574 sc-eQTL 9.39e-01 0.015 0.198 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 743951 sc-eQTL 5.64e-01 -0.122 0.212 0.05 CD8_TEM L2
ENSG00000058804 NDC1 795286 sc-eQTL 3.93e-01 -0.172 0.201 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 687820 sc-eQTL 7.33e-01 0.0652 0.191 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 5.74e-01 -0.116 0.206 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 580245 sc-eQTL 2.39e-01 -0.235 0.199 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 687664 sc-eQTL 1.17e-01 -0.335 0.213 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 449708 sc-eQTL 6.97e-01 0.0787 0.202 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 220270 sc-eQTL 6.88e-01 -0.0769 0.191 0.05 CD8_TEM L2
ENSG00000162402 USP24 -581615 sc-eQTL 3.26e-01 -0.198 0.201 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -82112 sc-eQTL 5.20e-01 -0.132 0.204 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -167574 sc-eQTL 2.57e-01 0.238 0.21 0.051 NK_CD56bright L2
ENSG00000058799 YIPF1 743951 sc-eQTL 9.75e-02 0.366 0.22 0.051 NK_CD56bright L2
ENSG00000058804 NDC1 795286 sc-eQTL 3.74e-01 0.185 0.207 0.051 NK_CD56bright L2
ENSG00000081870 HSPB11 687820 sc-eQTL 8.59e-01 -0.0374 0.211 0.051 NK_CD56bright L2
ENSG00000116133 DHCR24 -253446 sc-eQTL 3.11e-01 0.188 0.185 0.051 NK_CD56bright L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 3.18e-01 -0.196 0.196 0.051 NK_CD56bright L2
ENSG00000116209 TMEM59 580245 sc-eQTL 3.66e-01 -0.173 0.191 0.051 NK_CD56bright L2
ENSG00000116212 LRRC42 687664 sc-eQTL 1.07e-01 0.34 0.21 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 449708 sc-eQTL 6.56e-01 0.0954 0.214 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 220270 sc-eQTL 3.66e-01 0.146 0.161 0.051 NK_CD56bright L2
ENSG00000162398 LEXM -172314 sc-eQTL 4.51e-01 0.144 0.19 0.051 NK_CD56bright L2
ENSG00000162402 USP24 -581615 sc-eQTL 9.84e-01 0.00337 0.164 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 -82112 sc-eQTL 8.69e-01 0.0343 0.207 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 -167574 sc-eQTL 7.30e-01 0.0654 0.189 0.05 Pro_T L2
ENSG00000058799 YIPF1 743951 sc-eQTL 1.27e-01 -0.273 0.178 0.05 Pro_T L2
ENSG00000058804 NDC1 795286 sc-eQTL 6.36e-01 0.0673 0.142 0.05 Pro_T L2
ENSG00000081870 HSPB11 687820 sc-eQTL 2.60e-01 0.144 0.127 0.05 Pro_T L2
ENSG00000116133 DHCR24 -253446 sc-eQTL 8.21e-01 -0.0364 0.161 0.05 Pro_T L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 6.59e-01 0.0868 0.196 0.05 Pro_T L2
ENSG00000116209 TMEM59 580245 sc-eQTL 8.69e-01 -0.0226 0.136 0.05 Pro_T L2
ENSG00000116212 LRRC42 687664 sc-eQTL 5.76e-01 -0.098 0.175 0.05 Pro_T L2
ENSG00000116221 MRPL37 449708 sc-eQTL 8.47e-01 -0.0258 0.134 0.05 Pro_T L2
ENSG00000157216 SSBP3 220270 sc-eQTL 5.27e-01 0.0949 0.15 0.05 Pro_T L2
ENSG00000162402 USP24 -581615 sc-eQTL 2.94e-02 -0.396 0.181 0.05 Pro_T L2
ENSG00000215883 CYB5RL 433713 sc-eQTL 4.52e-01 0.136 0.18 0.05 Pro_T L2
ENSG00000243725 TTC4 -82112 sc-eQTL 5.06e-01 0.134 0.2 0.05 Pro_T L2
ENSG00000058799 YIPF1 743951 sc-eQTL 6.75e-01 -0.0868 0.207 0.054 cDC L2
ENSG00000058804 NDC1 795286 sc-eQTL 3.98e-02 -0.429 0.207 0.054 cDC L2
ENSG00000081870 HSPB11 687820 sc-eQTL 4.47e-01 -0.169 0.221 0.054 cDC L2
ENSG00000116133 DHCR24 -253446 sc-eQTL 5.22e-01 0.11 0.171 0.054 cDC L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 2.62e-01 -0.227 0.201 0.054 cDC L2
ENSG00000116209 TMEM59 580245 sc-eQTL 2.87e-01 -0.183 0.171 0.054 cDC L2
ENSG00000116212 LRRC42 687664 sc-eQTL 3.80e-01 -0.184 0.21 0.054 cDC L2
ENSG00000116221 MRPL37 449708 sc-eQTL 9.37e-01 -0.0175 0.22 0.054 cDC L2
ENSG00000157216 SSBP3 220270 sc-eQTL 4.06e-02 0.413 0.2 0.054 cDC L2
ENSG00000162390 ACOT11 91492 sc-eQTL 4.21e-01 -0.152 0.188 0.054 cDC L2
ENSG00000162402 USP24 -581615 sc-eQTL 2.51e-01 -0.242 0.21 0.054 cDC L2
ENSG00000215883 CYB5RL 433713 sc-eQTL 4.55e-01 -0.136 0.181 0.054 cDC L2
ENSG00000243725 TTC4 -82112 sc-eQTL 3.13e-01 -0.219 0.216 0.054 cDC L2
ENSG00000058799 YIPF1 743951 sc-eQTL 4.74e-01 0.147 0.205 0.051 intMono L2
ENSG00000058804 NDC1 795286 sc-eQTL 5.95e-02 0.395 0.208 0.051 intMono L2
ENSG00000081870 HSPB11 687820 sc-eQTL 8.16e-01 0.0467 0.201 0.051 intMono L2
ENSG00000116133 DHCR24 -253446 sc-eQTL 6.91e-01 0.0612 0.153 0.051 intMono L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 9.73e-01 0.00641 0.191 0.051 intMono L2
ENSG00000116209 TMEM59 580245 sc-eQTL 8.11e-01 0.0335 0.14 0.051 intMono L2
ENSG00000116212 LRRC42 687664 sc-eQTL 2.98e-01 -0.23 0.22 0.051 intMono L2
ENSG00000116221 MRPL37 449708 sc-eQTL 7.46e-01 0.0698 0.215 0.051 intMono L2
ENSG00000157216 SSBP3 220270 sc-eQTL 2.21e-01 -0.268 0.218 0.051 intMono L2
ENSG00000162402 USP24 -581615 sc-eQTL 9.79e-01 -0.00513 0.196 0.051 intMono L2
ENSG00000243725 TTC4 -82112 sc-eQTL 3.71e-01 -0.186 0.208 0.051 intMono L2
ENSG00000058799 YIPF1 743951 sc-eQTL 2.57e-01 0.228 0.201 0.052 ncMono L2
ENSG00000058804 NDC1 795286 sc-eQTL 7.28e-01 0.0693 0.199 0.052 ncMono L2
ENSG00000081870 HSPB11 687820 sc-eQTL 6.35e-01 -0.1 0.211 0.052 ncMono L2
ENSG00000116133 DHCR24 -253446 sc-eQTL 5.80e-01 0.084 0.151 0.052 ncMono L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 2.59e-01 0.214 0.189 0.052 ncMono L2
ENSG00000116209 TMEM59 580245 sc-eQTL 7.89e-01 0.0406 0.152 0.052 ncMono L2
ENSG00000116212 LRRC42 687664 sc-eQTL 1.02e-01 -0.337 0.205 0.052 ncMono L2
ENSG00000116221 MRPL37 449708 sc-eQTL 2.86e-01 -0.208 0.195 0.052 ncMono L2
ENSG00000157216 SSBP3 220270 sc-eQTL 7.96e-01 -0.0554 0.214 0.052 ncMono L2
ENSG00000162402 USP24 -581615 sc-eQTL 3.24e-01 -0.169 0.17 0.052 ncMono L2
ENSG00000243725 TTC4 -82112 sc-eQTL 4.06e-01 -0.168 0.202 0.052 ncMono L2
ENSG00000058799 YIPF1 743951 sc-eQTL 9.16e-01 0.0235 0.223 0.054 pDC L2
ENSG00000058804 NDC1 795286 sc-eQTL 4.47e-01 0.169 0.222 0.054 pDC L2
ENSG00000081870 HSPB11 687820 sc-eQTL 7.29e-01 0.0678 0.195 0.054 pDC L2
ENSG00000116133 DHCR24 -253446 sc-eQTL 3.46e-01 0.17 0.179 0.054 pDC L2
ENSG00000116205 TCEANC2 580165 sc-eQTL 1.26e-01 -0.329 0.214 0.054 pDC L2
ENSG00000116209 TMEM59 580245 sc-eQTL 9.13e-01 0.0188 0.172 0.054 pDC L2
ENSG00000116212 LRRC42 687664 sc-eQTL 1.66e-01 0.297 0.213 0.054 pDC L2
ENSG00000116221 MRPL37 449708 sc-eQTL 4.91e-01 0.158 0.229 0.054 pDC L2
ENSG00000157216 SSBP3 220270 sc-eQTL 8.48e-01 -0.0389 0.203 0.054 pDC L2
ENSG00000162390 ACOT11 91492 sc-eQTL 3.35e-01 -0.0824 0.0852 0.054 pDC L2
ENSG00000162402 USP24 -581615 sc-eQTL 3.49e-01 0.135 0.144 0.054 pDC L2
ENSG00000215883 CYB5RL 433713 sc-eQTL 2.72e-01 0.217 0.196 0.054 pDC L2
ENSG00000243725 TTC4 -82112 sc-eQTL 7.29e-01 0.0791 0.228 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000157216 SSBP3 220270 eQTL 0.00879 0.0661 0.0252 0.00117 0.0 0.0746
ENSG00000198711 SSBP3-AS1 397309 eQTL 4.47e-02 -0.0723 0.036 0.0 0.0 0.0746

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058804 \N 795286 2.61e-07 1.19e-07 3.71e-08 1.82e-07 8.83e-08 9.65e-08 1.44e-07 5.4e-08 1.41e-07 4.57e-08 1.6e-07 8.55e-08 1.33e-07 6.56e-08 6.17e-08 7.37e-08 3.98e-08 1.18e-07 5.82e-08 4.45e-08 1.08e-07 1.23e-07 1.32e-07 3.42e-08 1.32e-07 1.14e-07 1.06e-07 9.36e-08 1.05e-07 1.11e-07 9.64e-08 3.64e-08 3.66e-08 8.49e-08 8.96e-08 3.93e-08 5.37e-08 9.23e-08 6.78e-08 3.55e-08 3.82e-08 1.37e-07 5.22e-08 1.16e-08 5.75e-08 1.84e-08 1.21e-07 1.88e-09 5.01e-08
ENSG00000116133 \N -253446 1.27e-06 1.91e-06 2.77e-07 1.26e-06 3.95e-07 6.47e-07 1.24e-06 4.44e-07 1.73e-06 7.22e-07 1.89e-06 1.44e-06 2.63e-06 5.79e-07 4.38e-07 1.07e-06 1.11e-06 1.18e-06 5.7e-07 6.44e-07 6.39e-07 1.92e-06 1.19e-06 7.1e-07 2.41e-06 1.08e-06 1.12e-06 1.01e-06 1.72e-06 1.16e-06 7.64e-07 2.77e-07 4e-07 6.11e-07 7.4e-07 5.46e-07 7.59e-07 4.21e-07 5.07e-07 2.04e-07 3.58e-07 1.65e-06 4.11e-07 1.89e-07 3.75e-07 3.63e-07 6.27e-07 1.82e-07 1.68e-07
ENSG00000157216 SSBP3 220270 1.61e-06 2.37e-06 5.1e-07 1.96e-06 4.74e-07 8.48e-07 1.82e-06 8.37e-07 1.89e-06 9.48e-07 2.47e-06 1.67e-06 3.33e-06 1.34e-06 9.33e-07 1.61e-06 1.17e-06 2.17e-06 1.33e-06 1.28e-06 1.11e-06 2.75e-06 1.86e-06 1.03e-06 3.5e-06 1.05e-06 1.52e-06 1.69e-06 2.07e-06 1.58e-06 1.81e-06 4.17e-07 6.13e-07 1.22e-06 1.06e-06 8.84e-07 8.92e-07 4.48e-07 8.03e-07 3.54e-07 1.51e-07 2.51e-06 5.88e-07 1.63e-07 2.74e-07 3.62e-07 8.16e-07 2.87e-07 3.21e-07