logo

Genes within 1Mb (chr1:54236717:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -564606 sc-eQTL 3.75e-02 0.406 0.194 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 346919 sc-eQTL 1.79e-01 -0.279 0.207 0.05 CD4_CTL L2
ENSG00000058804 NDC1 398254 sc-eQTL 5.89e-01 0.111 0.205 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 290788 sc-eQTL 5.83e-01 0.117 0.214 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 183133 sc-eQTL 3.59e-01 0.185 0.202 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 183213 sc-eQTL 1.58e-01 -0.259 0.183 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 290632 sc-eQTL 2.80e-02 0.445 0.201 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 52676 sc-eQTL 3.61e-03 -0.651 0.221 0.05 CD4_CTL L2
ENSG00000157193 LRP8 908248 sc-eQTL 7.59e-01 -0.0643 0.21 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -176762 sc-eQTL 8.97e-01 0.0181 0.139 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 998199 sc-eQTL 7.85e-01 -0.0547 0.2 0.05 CD4_CTL L2
ENSG00000162402 USP24 -978647 sc-eQTL 6.53e-01 0.086 0.191 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -479144 sc-eQTL 4.45e-01 -0.163 0.213 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -564606 sc-eQTL 6.25e-01 0.0984 0.201 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 346919 sc-eQTL 2.01e-01 0.275 0.214 0.051 CD8_TCM L2
ENSG00000058804 NDC1 398254 sc-eQTL 2.35e-01 -0.237 0.199 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 290788 sc-eQTL 3.77e-01 -0.164 0.185 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 183133 sc-eQTL 6.79e-01 -0.0837 0.202 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 183213 sc-eQTL 1.41e-01 0.262 0.177 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 290632 sc-eQTL 2.34e-01 -0.251 0.21 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 52676 sc-eQTL 8.07e-01 0.0493 0.202 0.051 CD8_TCM L2
ENSG00000157193 LRP8 908248 sc-eQTL 5.39e-01 -0.115 0.187 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -176762 sc-eQTL 8.44e-02 0.302 0.174 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 998199 sc-eQTL 5.04e-01 -0.127 0.189 0.051 CD8_TCM L2
ENSG00000162402 USP24 -978647 sc-eQTL 8.93e-01 -0.0229 0.17 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -479144 sc-eQTL 1.20e-01 0.32 0.205 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -564606 sc-eQTL 3.52e-01 0.177 0.189 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 346919 sc-eQTL 3.41e-01 -0.194 0.203 0.05 CD8_TEM L2
ENSG00000058804 NDC1 398254 sc-eQTL 7.58e-01 0.0596 0.193 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 290788 sc-eQTL 6.72e-01 -0.0778 0.183 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 183133 sc-eQTL 6.04e-01 -0.103 0.198 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 183213 sc-eQTL 6.15e-01 0.0964 0.191 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 290632 sc-eQTL 6.52e-01 -0.0931 0.206 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 52676 sc-eQTL 7.38e-01 -0.065 0.194 0.05 CD8_TEM L2
ENSG00000157193 LRP8 908248 sc-eQTL 9.33e-01 -0.0161 0.193 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -176762 sc-eQTL 9.78e-01 -0.00507 0.184 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 998199 sc-eQTL 3.62e-01 0.159 0.174 0.05 CD8_TEM L2
ENSG00000162402 USP24 -978647 sc-eQTL 9.78e-01 -0.00535 0.193 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -479144 sc-eQTL 8.33e-01 -0.0414 0.197 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -564606 sc-eQTL 3.68e-01 -0.189 0.21 0.052 PB L2
ENSG00000058799 YIPF1 346919 sc-eQTL 7.55e-01 0.0463 0.148 0.052 PB L2
ENSG00000058804 NDC1 398254 sc-eQTL 3.57e-01 -0.203 0.219 0.052 PB L2
ENSG00000081870 HSPB11 290788 sc-eQTL 9.56e-01 0.0102 0.185 0.052 PB L2
ENSG00000116133 DHCR24 -650478 sc-eQTL 4.05e-01 0.155 0.186 0.052 PB L2
ENSG00000116205 TCEANC2 183133 sc-eQTL 8.04e-02 0.395 0.224 0.052 PB L2
ENSG00000116209 TMEM59 183213 sc-eQTL 4.26e-01 -0.0756 0.0946 0.052 PB L2
ENSG00000116212 LRRC42 290632 sc-eQTL 7.02e-03 0.569 0.207 0.052 PB L2
ENSG00000116221 MRPL37 52676 sc-eQTL 6.91e-03 -0.459 0.167 0.052 PB L2
ENSG00000157193 LRP8 908248 sc-eQTL 6.76e-01 0.0909 0.217 0.052 PB L2
ENSG00000157216 SSBP3 -176762 sc-eQTL 9.29e-01 -0.0178 0.199 0.052 PB L2
ENSG00000162385 MAGOH 998199 sc-eQTL 2.43e-01 0.244 0.208 0.052 PB L2
ENSG00000162402 USP24 -978647 sc-eQTL 1.92e-01 -0.295 0.224 0.052 PB L2
ENSG00000215883 CYB5RL 36681 sc-eQTL 9.37e-01 0.0187 0.234 0.052 PB L2
ENSG00000230138 LINC02812 868472 sc-eQTL 4.37e-01 -0.131 0.168 0.052 PB L2
ENSG00000243725 TTC4 -479144 sc-eQTL 2.98e-01 -0.228 0.218 0.052 PB L2
ENSG00000006555 TTC22 -564606 sc-eQTL 3.92e-01 -0.153 0.178 0.05 Pro_T L2
ENSG00000058799 YIPF1 346919 sc-eQTL 5.32e-01 0.106 0.169 0.05 Pro_T L2
ENSG00000058804 NDC1 398254 sc-eQTL 1.05e-01 -0.217 0.133 0.05 Pro_T L2
ENSG00000081870 HSPB11 290788 sc-eQTL 1.63e-01 -0.168 0.12 0.05 Pro_T L2
ENSG00000116133 DHCR24 -650478 sc-eQTL 4.61e-01 0.112 0.152 0.05 Pro_T L2
ENSG00000116205 TCEANC2 183133 sc-eQTL 6.44e-01 0.0857 0.185 0.05 Pro_T L2
ENSG00000116209 TMEM59 183213 sc-eQTL 8.15e-01 0.0301 0.129 0.05 Pro_T L2
ENSG00000116212 LRRC42 290632 sc-eQTL 5.46e-01 -0.1 0.165 0.05 Pro_T L2
ENSG00000116221 MRPL37 52676 sc-eQTL 9.87e-02 -0.208 0.125 0.05 Pro_T L2
ENSG00000157193 LRP8 908248 sc-eQTL 6.33e-01 0.0825 0.172 0.05 Pro_T L2
ENSG00000157216 SSBP3 -176762 sc-eQTL 5.85e-01 -0.0772 0.141 0.05 Pro_T L2
ENSG00000162385 MAGOH 998199 sc-eQTL 2.98e-02 -0.342 0.156 0.05 Pro_T L2
ENSG00000162402 USP24 -978647 sc-eQTL 3.60e-01 0.158 0.172 0.05 Pro_T L2
ENSG00000215883 CYB5RL 36681 sc-eQTL 8.06e-01 0.0419 0.17 0.05 Pro_T L2
ENSG00000243725 TTC4 -479144 sc-eQTL 9.55e-01 -0.0108 0.189 0.05 Pro_T L2
ENSG00000058799 YIPF1 346919 sc-eQTL 3.61e-01 -0.187 0.204 0.052 ncMono L2
ENSG00000058804 NDC1 398254 sc-eQTL 5.68e-01 -0.115 0.202 0.052 ncMono L2
ENSG00000081870 HSPB11 290788 sc-eQTL 8.65e-01 0.0366 0.215 0.052 ncMono L2
ENSG00000116133 DHCR24 -650478 sc-eQTL 5.78e-01 0.0857 0.154 0.052 ncMono L2
ENSG00000116205 TCEANC2 183133 sc-eQTL 5.31e-01 0.121 0.192 0.052 ncMono L2
ENSG00000116209 TMEM59 183213 sc-eQTL 3.99e-01 0.13 0.154 0.052 ncMono L2
ENSG00000116212 LRRC42 290632 sc-eQTL 5.60e-01 0.122 0.21 0.052 ncMono L2
ENSG00000116221 MRPL37 52676 sc-eQTL 8.91e-01 -0.0272 0.198 0.052 ncMono L2
ENSG00000157193 LRP8 908248 sc-eQTL 5.09e-01 0.143 0.217 0.052 ncMono L2
ENSG00000157216 SSBP3 -176762 sc-eQTL 1.22e-01 -0.335 0.216 0.052 ncMono L2
ENSG00000162385 MAGOH 998199 sc-eQTL 5.51e-01 -0.108 0.181 0.052 ncMono L2
ENSG00000162402 USP24 -978647 sc-eQTL 2.45e-01 0.202 0.173 0.052 ncMono L2
ENSG00000243725 TTC4 -479144 sc-eQTL 9.99e-01 -0.000282 0.205 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116221 MRPL37 52676 eQTL 2.8e-07 -0.121 0.0233 0.0 0.0 0.0751
ENSG00000157193 LRP8 908647 eQTL 0.0139 0.0939 0.0381 0.0 0.0 0.0751
ENSG00000157216 SSBP3 -176762 eQTL 1.04e-07 -0.133 0.0248 0.0229 0.0222 0.0751
ENSG00000198711 SSBP3-AS1 277 eQTL 4.61e-02 -0.0716 0.0358 0.0 0.0 0.0751
ENSG00000285954 AC119428.3 892686 eQTL 0.0066 -0.176 0.0645 0.00323 0.0 0.0751

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N -650478 2.76e-07 1.3e-07 8.55e-08 2.01e-07 9.79e-08 9.91e-08 1.61e-07 5.37e-08 1.47e-07 6.4e-08 1.55e-07 9.19e-08 1.69e-07 7.95e-08 5.72e-08 7.23e-08 3.93e-08 1.4e-07 7.09e-08 4.3e-08 1.26e-07 1.25e-07 1.45e-07 2.95e-08 1.65e-07 1.22e-07 1.17e-07 1.06e-07 1.12e-07 1.03e-07 1.07e-07 2.93e-08 3.89e-08 8.11e-08 4.92e-08 3.6e-08 5.29e-08 8.61e-08 6.55e-08 3.71e-08 5.13e-08 1.33e-07 5.08e-08 1.21e-08 2.82e-08 1.68e-08 1.11e-07 2e-09 5.02e-08
ENSG00000116221 MRPL37 52676 1.09e-05 1.18e-05 1.56e-06 6.11e-06 2.26e-06 4.34e-06 1.15e-05 2.04e-06 1.01e-05 5.16e-06 1.35e-05 5.48e-06 1.6e-05 3.88e-06 2.82e-06 6.34e-06 4.94e-06 7.18e-06 2.6e-06 2.88e-06 5.13e-06 1.04e-05 8.1e-06 2.83e-06 1.53e-05 3.77e-06 5.47e-06 4.49e-06 1.06e-05 8.06e-06 6.37e-06 9.02e-07 1.21e-06 2.86e-06 4.54e-06 2.13e-06 1.57e-06 1.97e-06 1.57e-06 8.74e-07 8.43e-07 1.3e-05 1.49e-06 1.47e-07 7.62e-07 1.72e-06 1.32e-06 6.93e-07 4.67e-07
ENSG00000157216 SSBP3 -176762 1.92e-06 2.06e-06 5.8e-07 1.51e-06 4.18e-07 7.18e-07 1.2e-06 4.17e-07 1.69e-06 7.73e-07 1.83e-06 1.29e-06 3.3e-06 1.15e-06 6.04e-07 1.16e-06 1.1e-06 1.29e-06 6.68e-07 6.02e-07 6.57e-07 2.17e-06 1.61e-06 5.81e-07 2.73e-06 9.87e-07 1.22e-06 1.45e-06 1.67e-06 1.36e-06 1.49e-06 2.61e-07 3.47e-07 5.51e-07 9.46e-07 4.74e-07 7.21e-07 3.36e-07 5.09e-07 3.02e-07 2.87e-07 2.01e-06 4.41e-07 1.81e-07 3.3e-07 3.21e-07 3.8e-07 2.62e-07 2.62e-07
ENSG00000184313 \N -405037 5.85e-07 2.5e-07 3e-07 3.58e-07 1.09e-07 1.54e-07 3.57e-07 6.72e-08 3.17e-07 2.12e-07 3.32e-07 2.28e-07 5.62e-07 1.1e-07 1.68e-07 1.75e-07 8.53e-08 2.96e-07 2.13e-07 8.39e-08 1.61e-07 2.86e-07 2.33e-07 4.91e-08 5.53e-07 2.32e-07 2.52e-07 2.44e-07 1.76e-07 2.01e-07 2.55e-07 6.04e-08 4.96e-08 1.17e-07 2.58e-07 3.94e-08 6.77e-08 6.56e-08 4.99e-08 7.92e-08 4.89e-08 2e-07 2.8e-08 1.14e-07 1.01e-07 1.25e-08 9.98e-08 1.22e-08 5.49e-08
ENSG00000198711 SSBP3-AS1 277 7.11e-05 6.65e-05 1.6e-05 3.07e-05 1.51e-05 3.1e-05 9.32e-05 1.51e-05 7.79e-05 4.83e-05 0.000105 4e-05 0.000115 3.61e-05 1.9e-05 5.71e-05 4.39e-05 6.12e-05 2.03e-05 1.93e-05 4.11e-05 8.69e-05 7.05e-05 2.68e-05 0.000105 2.65e-05 3.74e-05 3.68e-05 7.34e-05 6.37e-05 5.07e-05 6.33e-06 9.79e-06 1.78e-05 2.58e-05 1.52e-05 9.35e-06 1.07e-05 1.4e-05 8.39e-06 4.56e-06 6.97e-05 9.38e-06 1.72e-06 7.64e-06 1.25e-05 1.12e-05 6.02e-06 4.74e-06
ENSG00000215883 \N 36681 1.45e-05 1.51e-05 2.54e-06 8.26e-06 2.32e-06 6.16e-06 1.83e-05 2.11e-06 1.28e-05 6.24e-06 1.79e-05 6.72e-06 2.31e-05 5.14e-06 4.14e-06 8.32e-06 7.29e-06 1.04e-05 3.39e-06 3.13e-06 6.46e-06 1.31e-05 1.25e-05 3.37e-06 2.26e-05 4.65e-06 7.43e-06 5.45e-06 1.44e-05 1.14e-05 8.75e-06 9.85e-07 1.2e-06 3.49e-06 5.77e-06 2.76e-06 1.87e-06 2.09e-06 2.14e-06 1.04e-06 1.01e-06 1.79e-05 2.24e-06 1.88e-07 8.66e-07 2.04e-06 1.91e-06 8.34e-07 4.73e-07
ENSG00000280378 \N 201837 1.4e-06 1.18e-06 3.66e-07 1.28e-06 3.45e-07 6.06e-07 1.51e-06 4.01e-07 1.7e-06 7.14e-07 2.04e-06 9.12e-07 2.58e-06 5.4e-07 3.41e-07 1e-06 9.41e-07 9.7e-07 5.56e-07 5.15e-07 7.58e-07 1.96e-06 1.05e-06 6.63e-07 2.41e-06 7.45e-07 1e-06 1.05e-06 1.47e-06 1.2e-06 7.56e-07 2.06e-07 2.57e-07 6.86e-07 7.35e-07 4.74e-07 7.14e-07 2.95e-07 4.04e-07 2.51e-07 3.01e-07 1.56e-06 3.77e-07 1.68e-07 3.24e-07 3.26e-07 2.56e-07 1.45e-07 1.86e-07