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Genes within 1Mb (chr1:53955529:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -845794 sc-eQTL 2.50e-01 0.214 0.185 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 65731 sc-eQTL 5.70e-01 -0.112 0.197 0.05 CD4_CTL L2
ENSG00000058804 NDC1 117066 sc-eQTL 9.88e-01 0.00296 0.194 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 9600 sc-eQTL 2.42e-01 -0.237 0.202 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -98055 sc-eQTL 4.40e-01 0.148 0.191 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -97975 sc-eQTL 3.89e-01 0.15 0.174 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 9444 sc-eQTL 5.84e-03 0.528 0.189 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -228512 sc-eQTL 5.18e-01 0.138 0.214 0.05 CD4_CTL L2
ENSG00000157184 CPT2 758737 sc-eQTL 5.31e-01 -0.122 0.195 0.05 CD4_CTL L2
ENSG00000157193 LRP8 627060 sc-eQTL 7.21e-01 -0.071 0.199 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -457950 sc-eQTL 4.73e-01 0.0945 0.131 0.05 CD4_CTL L2
ENSG00000162384 CZIB 734895 sc-eQTL 8.95e-01 -0.0275 0.208 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 717011 sc-eQTL 9.40e-01 -0.0144 0.19 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -760332 sc-eQTL 6.54e-01 -0.0907 0.202 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -845794 sc-eQTL 1.67e-01 0.262 0.189 0.053 CD8_TEM L2
ENSG00000058799 YIPF1 65731 sc-eQTL 3.47e-01 0.191 0.203 0.053 CD8_TEM L2
ENSG00000058804 NDC1 117066 sc-eQTL 2.55e-01 0.22 0.193 0.053 CD8_TEM L2
ENSG00000081870 HSPB11 9600 sc-eQTL 7.75e-01 0.0524 0.183 0.053 CD8_TEM L2
ENSG00000116205 TCEANC2 -98055 sc-eQTL 3.72e-01 0.177 0.198 0.053 CD8_TEM L2
ENSG00000116209 TMEM59 -97975 sc-eQTL 5.06e-01 0.128 0.191 0.053 CD8_TEM L2
ENSG00000116212 LRRC42 9444 sc-eQTL 6.99e-01 0.0797 0.206 0.053 CD8_TEM L2
ENSG00000116221 MRPL37 -228512 sc-eQTL 5.98e-02 0.364 0.192 0.053 CD8_TEM L2
ENSG00000157184 CPT2 758737 sc-eQTL 3.91e-01 0.173 0.201 0.053 CD8_TEM L2
ENSG00000157193 LRP8 627060 sc-eQTL 1.83e-01 0.257 0.192 0.053 CD8_TEM L2
ENSG00000157216 SSBP3 -457950 sc-eQTL 8.94e-01 0.0245 0.184 0.053 CD8_TEM L2
ENSG00000162383 SLC1A7 812897 sc-eQTL 4.20e-01 0.101 0.124 0.053 CD8_TEM L2
ENSG00000162384 CZIB 734895 sc-eQTL 5.37e-01 -0.128 0.206 0.053 CD8_TEM L2
ENSG00000162385 MAGOH 717011 sc-eQTL 6.00e-01 0.0914 0.174 0.053 CD8_TEM L2
ENSG00000243725 TTC4 -760332 sc-eQTL 7.95e-01 -0.0511 0.197 0.053 CD8_TEM L2
ENSG00000006555 TTC22 -845794 sc-eQTL 1.96e-01 0.261 0.201 0.051 NK_CD56bright L2
ENSG00000058799 YIPF1 65731 sc-eQTL 2.49e-01 -0.245 0.212 0.051 NK_CD56bright L2
ENSG00000058804 NDC1 117066 sc-eQTL 5.76e-01 0.112 0.199 0.051 NK_CD56bright L2
ENSG00000081870 HSPB11 9600 sc-eQTL 1.55e-01 -0.288 0.201 0.051 NK_CD56bright L2
ENSG00000116133 DHCR24 -931666 sc-eQTL 9.07e-01 0.0209 0.179 0.051 NK_CD56bright L2
ENSG00000116205 TCEANC2 -98055 sc-eQTL 1.70e-01 -0.258 0.188 0.051 NK_CD56bright L2
ENSG00000116209 TMEM59 -97975 sc-eQTL 6.13e-01 0.0931 0.184 0.051 NK_CD56bright L2
ENSG00000116212 LRRC42 9444 sc-eQTL 1.89e-02 0.474 0.2 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 -228512 sc-eQTL 6.07e-01 0.106 0.205 0.051 NK_CD56bright L2
ENSG00000157184 CPT2 758737 sc-eQTL 6.39e-01 -0.0933 0.199 0.051 NK_CD56bright L2
ENSG00000157193 LRP8 627060 sc-eQTL 3.31e-01 0.183 0.188 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 -457950 sc-eQTL 4.11e-01 -0.127 0.155 0.051 NK_CD56bright L2
ENSG00000162383 SLC1A7 812897 sc-eQTL 9.30e-01 0.0137 0.156 0.051 NK_CD56bright L2
ENSG00000162384 CZIB 734895 sc-eQTL 2.70e-01 -0.214 0.193 0.051 NK_CD56bright L2
ENSG00000162385 MAGOH 717011 sc-eQTL 4.41e-01 -0.135 0.174 0.051 NK_CD56bright L2
ENSG00000162398 LEXM -850534 sc-eQTL 3.34e-01 0.177 0.183 0.051 NK_CD56bright L2
ENSG00000174348 PODN 893477 sc-eQTL 2.30e-01 -0.168 0.14 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 -760332 sc-eQTL 1.08e-01 0.319 0.197 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 -845794 sc-eQTL 7.53e-02 0.324 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 65731 sc-eQTL 5.51e-01 -0.103 0.173 0.05 Pro_T L2
ENSG00000058804 NDC1 117066 sc-eQTL 7.70e-01 0.04 0.137 0.05 Pro_T L2
ENSG00000081870 HSPB11 9600 sc-eQTL 4.39e-01 0.0954 0.123 0.05 Pro_T L2
ENSG00000116133 DHCR24 -931666 sc-eQTL 1.93e-01 -0.202 0.154 0.05 Pro_T L2
ENSG00000116205 TCEANC2 -98055 sc-eQTL 1.72e-01 0.258 0.188 0.05 Pro_T L2
ENSG00000116209 TMEM59 -97975 sc-eQTL 9.24e-01 -0.0125 0.131 0.05 Pro_T L2
ENSG00000116212 LRRC42 9444 sc-eQTL 7.49e-02 -0.3 0.168 0.05 Pro_T L2
ENSG00000116221 MRPL37 -228512 sc-eQTL 8.35e-01 -0.0269 0.129 0.05 Pro_T L2
ENSG00000157184 CPT2 758737 sc-eQTL 6.00e-01 -0.0931 0.177 0.05 Pro_T L2
ENSG00000157193 LRP8 627060 sc-eQTL 1.00e+00 -6.12e-05 0.176 0.05 Pro_T L2
ENSG00000157216 SSBP3 -457950 sc-eQTL 3.46e-01 0.136 0.144 0.05 Pro_T L2
ENSG00000162383 SLC1A7 812897 sc-eQTL 1.98e-01 -0.215 0.167 0.05 Pro_T L2
ENSG00000162384 CZIB 734895 sc-eQTL 1.62e-01 -0.279 0.198 0.05 Pro_T L2
ENSG00000162385 MAGOH 717011 sc-eQTL 1.60e-02 0.387 0.159 0.05 Pro_T L2
ENSG00000215883 CYB5RL -244507 sc-eQTL 9.90e-01 0.00213 0.174 0.05 Pro_T L2
ENSG00000243725 TTC4 -760332 sc-eQTL 3.59e-01 -0.177 0.193 0.05 Pro_T L2
ENSG00000058799 YIPF1 65731 sc-eQTL 6.72e-01 0.0846 0.2 0.051 intMono L2
ENSG00000058804 NDC1 117066 sc-eQTL 2.13e-02 0.469 0.202 0.051 intMono L2
ENSG00000081870 HSPB11 9600 sc-eQTL 4.74e-01 0.14 0.195 0.051 intMono L2
ENSG00000116133 DHCR24 -931666 sc-eQTL 5.69e-01 -0.0853 0.149 0.051 intMono L2
ENSG00000116205 TCEANC2 -98055 sc-eQTL 1.28e-01 -0.283 0.185 0.051 intMono L2
ENSG00000116209 TMEM59 -97975 sc-eQTL 8.76e-01 0.0213 0.137 0.051 intMono L2
ENSG00000116212 LRRC42 9444 sc-eQTL 5.34e-02 -0.413 0.213 0.051 intMono L2
ENSG00000116221 MRPL37 -228512 sc-eQTL 3.11e-01 0.212 0.209 0.051 intMono L2
ENSG00000157184 CPT2 758737 sc-eQTL 2.51e-01 -0.235 0.204 0.051 intMono L2
ENSG00000157193 LRP8 627060 sc-eQTL 7.83e-01 -0.0543 0.197 0.051 intMono L2
ENSG00000157216 SSBP3 -457950 sc-eQTL 7.72e-01 -0.062 0.214 0.051 intMono L2
ENSG00000162384 CZIB 734895 sc-eQTL 7.17e-01 -0.0744 0.205 0.051 intMono L2
ENSG00000162385 MAGOH 717011 sc-eQTL 3.61e-01 0.154 0.169 0.051 intMono L2
ENSG00000243725 TTC4 -760332 sc-eQTL 9.27e-01 -0.0185 0.203 0.051 intMono L2
ENSG00000058799 YIPF1 65731 sc-eQTL 3.58e-01 -0.177 0.192 0.052 ncMono L2
ENSG00000058804 NDC1 117066 sc-eQTL 1.25e-01 -0.291 0.189 0.052 ncMono L2
ENSG00000081870 HSPB11 9600 sc-eQTL 1.14e-02 0.508 0.199 0.052 ncMono L2
ENSG00000116133 DHCR24 -931666 sc-eQTL 4.81e-01 -0.102 0.145 0.052 ncMono L2
ENSG00000116205 TCEANC2 -98055 sc-eQTL 4.05e-01 -0.151 0.181 0.052 ncMono L2
ENSG00000116209 TMEM59 -97975 sc-eQTL 1.90e-01 0.19 0.144 0.052 ncMono L2
ENSG00000116212 LRRC42 9444 sc-eQTL 4.96e-01 0.135 0.198 0.052 ncMono L2
ENSG00000116221 MRPL37 -228512 sc-eQTL 9.20e-01 -0.0188 0.187 0.052 ncMono L2
ENSG00000157184 CPT2 758737 sc-eQTL 1.04e-01 0.285 0.175 0.052 ncMono L2
ENSG00000157193 LRP8 627060 sc-eQTL 1.30e-01 -0.309 0.203 0.052 ncMono L2
ENSG00000157216 SSBP3 -457950 sc-eQTL 5.25e-02 0.395 0.203 0.052 ncMono L2
ENSG00000162384 CZIB 734895 sc-eQTL 5.99e-03 0.538 0.194 0.052 ncMono L2
ENSG00000162385 MAGOH 717011 sc-eQTL 7.53e-01 0.0537 0.171 0.052 ncMono L2
ENSG00000243725 TTC4 -760332 sc-eQTL 9.09e-01 0.0222 0.194 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 -97975 eQTL 0.0356 0.0401 0.019 0.0 0.0 0.0491
ENSG00000116212 LRRC42 9444 eQTL 0.000359 0.158 0.0442 0.00478 0.00479 0.0491
ENSG00000157216 SSBP3 -457950 eQTL 0.0395 0.0613 0.0297 0.0 0.0 0.0491
ENSG00000162396 PARS2 -808994 eQTL 0.00593 0.164 0.0596 0.00237 0.0 0.0491
ENSG00000280378 AL353898.3 -79351 eQTL 0.017 -0.144 0.0603 0.0 0.0 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 PARS2 -808994 2.8e-07 1.7e-07 3.71e-08 2.07e-07 9.79e-08 9.8e-08 1.67e-07 5.2e-08 1.45e-07 4.94e-08 1.73e-07 8.68e-08 1.52e-07 7.13e-08 5.91e-08 7.36e-08 4.09e-08 1.4e-07 6.92e-08 4.04e-08 1.21e-07 1.24e-07 1.44e-07 3.03e-08 1.5e-07 1.26e-07 1.07e-07 9.74e-08 1.12e-07 1e-07 9.92e-08 3.68e-08 3.3e-08 8.34e-08 8.74e-08 3.49e-08 5.22e-08 9.22e-08 6.54e-08 3.71e-08 4.36e-08 1.46e-07 5.08e-08 2.05e-08 3.41e-08 1.84e-08 1.19e-07 3.99e-09 4.94e-08
ENSG00000226754 \N 716919 3.07e-07 2.5e-07 4.48e-08 2.25e-07 1.03e-07 9.05e-08 2.1e-07 5.48e-08 1.59e-07 6.08e-08 1.69e-07 1.05e-07 1.87e-07 8.13e-08 5.82e-08 7.74e-08 4.45e-08 1.64e-07 7.39e-08 4.78e-08 1.27e-07 1.31e-07 1.62e-07 2.68e-08 1.72e-07 1.31e-07 1.17e-07 1.06e-07 1.24e-07 1.06e-07 1.07e-07 3.59e-08 3.66e-08 8.72e-08 7.02e-08 2.69e-08 5.58e-08 9.3e-08 6.43e-08 3.82e-08 4.63e-08 1.59e-07 3.55e-08 1.9e-08 3.36e-08 1.92e-08 1.19e-07 3.83e-09 5.01e-08