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Genes within 1Mb (chr1:52962139:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -927659 sc-eQTL 8.20e-01 0.0501 0.22 0.05 NK_HLA L2
ENSG00000058804 NDC1 -876324 sc-eQTL 5.80e-01 0.121 0.219 0.05 NK_HLA L2
ENSG00000081870 HSPB11 -983790 sc-eQTL 3.69e-01 -0.187 0.208 0.05 NK_HLA L2
ENSG00000116157 GPX7 359768 sc-eQTL 5.37e-01 0.132 0.214 0.05 NK_HLA L2
ENSG00000116171 SCP2 34863 sc-eQTL 6.51e-01 0.0776 0.171 0.05 NK_HLA L2
ENSG00000116212 LRRC42 -983946 sc-eQTL 7.84e-01 0.0598 0.217 0.05 NK_HLA L2
ENSG00000117862 TXNDC12 905968 sc-eQTL 4.35e-01 -0.17 0.217 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 34927 sc-eQTL 9.98e-01 0.00061 0.22 0.05 NK_HLA L2
ENSG00000134717 BTF3L4 905940 sc-eQTL 2.52e-02 -0.485 0.215 0.05 NK_HLA L2
ENSG00000134744 TUT4 408652 sc-eQTL 2.46e-01 -0.253 0.217 0.05 NK_HLA L2
ENSG00000134748 PRPF38A 557537 sc-eQTL 1.82e-01 0.293 0.219 0.05 NK_HLA L2
ENSG00000154222 CC2D1B 595946 sc-eQTL 6.45e-01 -0.105 0.228 0.05 NK_HLA L2
ENSG00000157184 CPT2 -234653 sc-eQTL 5.22e-01 0.131 0.204 0.05 NK_HLA L2
ENSG00000157193 LRP8 -366330 sc-eQTL 3.21e-01 0.206 0.207 0.05 NK_HLA L2
ENSG00000162377 COA7 263792 sc-eQTL 3.65e-01 -0.177 0.195 0.05 NK_HLA L2
ENSG00000162378 ZYG11B 235686 sc-eQTL 6.36e-01 -0.102 0.215 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 -180493 sc-eQTL 1.23e-02 -0.491 0.194 0.05 NK_HLA L2
ENSG00000162384 CZIB -258495 sc-eQTL 1.44e-01 -0.303 0.206 0.05 NK_HLA L2
ENSG00000162385 MAGOH -276379 sc-eQTL 1.33e-01 -0.298 0.197 0.05 NK_HLA L2
ENSG00000174348 PODN -99913 sc-eQTL 5.52e-01 0.123 0.206 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A 328971 sc-eQTL 9.73e-01 -0.00748 0.218 0.05 NK_HLA L2
ENSG00000198841 KTI12 928329 sc-eQTL 4.42e-01 0.165 0.214 0.05 NK_HLA L2
ENSG00000058799 YIPF1 -927659 sc-eQTL 2.96e-01 -0.18 0.171 0.052 PB L2
ENSG00000058804 NDC1 -876324 sc-eQTL 8.12e-01 -0.0611 0.256 0.052 PB L2
ENSG00000081870 HSPB11 -983790 sc-eQTL 6.48e-01 -0.0986 0.216 0.052 PB L2
ENSG00000116157 GPX7 359768 sc-eQTL 7.13e-01 -0.0794 0.215 0.052 PB L2
ENSG00000116171 SCP2 34863 sc-eQTL 9.57e-01 0.0101 0.187 0.052 PB L2
ENSG00000116212 LRRC42 -983946 sc-eQTL 3.12e-01 -0.252 0.248 0.052 PB L2
ENSG00000117862 TXNDC12 905968 sc-eQTL 1.25e-01 0.262 0.169 0.052 PB L2
ENSG00000121310 ECHDC2 34927 sc-eQTL 6.11e-01 0.141 0.277 0.052 PB L2
ENSG00000134717 BTF3L4 905940 sc-eQTL 2.34e-01 0.329 0.275 0.052 PB L2
ENSG00000134744 TUT4 408652 sc-eQTL 8.51e-01 -0.0479 0.254 0.052 PB L2
ENSG00000134748 PRPF38A 557537 sc-eQTL 1.74e-01 0.326 0.238 0.052 PB L2
ENSG00000154222 CC2D1B 595946 sc-eQTL 4.56e-01 0.197 0.263 0.052 PB L2
ENSG00000157184 CPT2 -234653 sc-eQTL 6.51e-01 -0.108 0.239 0.052 PB L2
ENSG00000157193 LRP8 -366330 sc-eQTL 8.14e-01 -0.0595 0.252 0.052 PB L2
ENSG00000162377 COA7 263792 sc-eQTL 7.53e-02 0.435 0.242 0.052 PB L2
ENSG00000162378 ZYG11B 235686 sc-eQTL 8.84e-02 -0.456 0.265 0.052 PB L2
ENSG00000162384 CZIB -258495 sc-eQTL 7.77e-02 -0.462 0.26 0.052 PB L2
ENSG00000162385 MAGOH -276379 sc-eQTL 3.30e-01 0.237 0.243 0.052 PB L2
ENSG00000182183 SHISAL2A 328971 sc-eQTL 4.79e-01 -0.158 0.223 0.052 PB L2
ENSG00000198841 KTI12 928329 sc-eQTL 5.14e-01 0.165 0.252 0.052 PB L2
ENSG00000230138 LINC02812 -406106 sc-eQTL 8.08e-01 -0.0478 0.196 0.052 PB L2
ENSG00000058799 YIPF1 -927659 sc-eQTL 4.77e-01 -0.147 0.207 0.051 cDC L2
ENSG00000058804 NDC1 -876324 sc-eQTL 2.13e-01 -0.261 0.209 0.051 cDC L2
ENSG00000081870 HSPB11 -983790 sc-eQTL 1.15e-01 -0.348 0.22 0.051 cDC L2
ENSG00000116157 GPX7 359768 sc-eQTL 8.57e-01 0.0336 0.187 0.051 cDC L2
ENSG00000116171 SCP2 34863 sc-eQTL 6.07e-02 0.343 0.182 0.051 cDC L2
ENSG00000116212 LRRC42 -983946 sc-eQTL 6.79e-01 0.0871 0.21 0.051 cDC L2
ENSG00000117862 TXNDC12 905968 sc-eQTL 8.30e-01 0.0424 0.197 0.051 cDC L2
ENSG00000121310 ECHDC2 34927 sc-eQTL 8.38e-01 -0.0436 0.213 0.051 cDC L2
ENSG00000134717 BTF3L4 905940 sc-eQTL 6.31e-01 -0.0959 0.2 0.051 cDC L2
ENSG00000134744 TUT4 408652 sc-eQTL 9.97e-01 0.000911 0.222 0.051 cDC L2
ENSG00000134748 PRPF38A 557537 sc-eQTL 5.59e-01 0.119 0.204 0.051 cDC L2
ENSG00000154222 CC2D1B 595946 sc-eQTL 7.25e-01 0.0783 0.222 0.051 cDC L2
ENSG00000157184 CPT2 -234653 sc-eQTL 1.43e-01 -0.312 0.212 0.051 cDC L2
ENSG00000157193 LRP8 -366330 sc-eQTL 4.25e-01 -0.174 0.218 0.051 cDC L2
ENSG00000162377 COA7 263792 sc-eQTL 6.71e-01 -0.0896 0.21 0.051 cDC L2
ENSG00000162378 ZYG11B 235686 sc-eQTL 5.36e-01 -0.137 0.222 0.051 cDC L2
ENSG00000162384 CZIB -258495 sc-eQTL 2.22e-01 -0.244 0.199 0.051 cDC L2
ENSG00000162385 MAGOH -276379 sc-eQTL 5.10e-01 -0.12 0.183 0.051 cDC L2
ENSG00000198841 KTI12 928329 sc-eQTL 9.91e-01 -0.00224 0.209 0.051 cDC L2
ENSG00000230138 LINC02812 -406106 sc-eQTL 6.64e-01 -0.0817 0.188 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116171 SCP2 34863 pQTL 0.0289 0.108 0.0496 0.0 0.0 0.0491
ENSG00000116171 SCP2 34863 eQTL 4.09e-16 0.318 0.0384 0.0 0.0 0.0427
ENSG00000121310 ECHDC2 34927 eQTL 0.00134 0.14 0.0436 0.0 0.0 0.0427
ENSG00000134748 PRPF38A 557537 eQTL 4.90e-02 -0.0929 0.0471 0.00147 0.0 0.0427
ENSG00000157077 ZFYVE9 820045 eQTL 0.0292 -0.13 0.0595 0.00214 0.0 0.0427
ENSG00000162378 ZYG11B 235686 eQTL 0.00675 -0.133 0.0489 0.0 0.0 0.0427
ENSG00000162383 SLC1A7 -180493 eQTL 3.07e-18 -0.586 0.0659 0.0 0.0 0.0427
ENSG00000174348 PODN -99913 eQTL 4.16e-06 0.217 0.047 0.0 0.0 0.0427
ENSG00000226147 TUBBP10 -32587 eQTL 0.000378 0.347 0.0973 0.0 0.0 0.0427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116171 SCP2 34863 1.08e-05 1.25e-05 2.48e-06 7.63e-06 2.5e-06 5.82e-06 1.57e-05 2.44e-06 1.24e-05 6.44e-06 1.6e-05 6.53e-06 2.16e-05 4.48e-06 3.87e-06 8.18e-06 6.4e-06 1.08e-05 3.6e-06 3.53e-06 6.83e-06 1.24e-05 1.22e-05 4.43e-06 2.26e-05 4.96e-06 7.34e-06 5.51e-06 1.44e-05 1.25e-05 7.68e-06 1.01e-06 1.4e-06 4.09e-06 5.87e-06 3.41e-06 1.7e-06 2.4e-06 2.42e-06 1.57e-06 1.69e-06 1.54e-05 1.61e-06 3.78e-07 1.43e-06 2.34e-06 2.46e-06 8.41e-07 8.3e-07
ENSG00000162378 ZYG11B 235686 1.32e-06 1.01e-06 3.43e-07 9.43e-07 3.43e-07 5.09e-07 1.63e-06 3.82e-07 1.48e-06 4.66e-07 1.81e-06 6.45e-07 2.1e-06 3.07e-07 5.72e-07 9.16e-07 9.33e-07 6.96e-07 8.48e-07 6.55e-07 7.11e-07 1.6e-06 8.37e-07 6.33e-07 2.24e-06 5.67e-07 8.99e-07 7.24e-07 1.38e-06 1.34e-06 7.03e-07 1.85e-07 1.99e-07 6.99e-07 5.63e-07 4.44e-07 5.22e-07 2.31e-07 3.34e-07 3.23e-07 2.87e-07 1.65e-06 5.94e-08 1.41e-07 2.25e-07 1.28e-07 2.16e-07 8.42e-08 1.68e-07
ENSG00000162383 SLC1A7 -180493 1.6e-06 2.24e-06 2.86e-07 1.33e-06 4.59e-07 6.44e-07 1.32e-06 4.22e-07 1.76e-06 6.94e-07 1.81e-06 1.29e-06 2.67e-06 5.86e-07 3.4e-07 1.06e-06 1.12e-06 1.3e-06 5.52e-07 6.51e-07 6.5e-07 1.96e-06 1.6e-06 8.39e-07 2.52e-06 1.1e-06 1.12e-06 1.04e-06 1.68e-06 1.59e-06 7.53e-07 2.46e-07 3.99e-07 6.66e-07 8.23e-07 6.76e-07 7.08e-07 3.45e-07 5.34e-07 2.28e-07 3.2e-07 2.66e-06 3.44e-07 1.96e-07 3.48e-07 3.24e-07 4.11e-07 1.96e-07 2.9e-07
ENSG00000162384 \N -258495 1.29e-06 9.88e-07 3.03e-07 5.92e-07 2.95e-07 4.63e-07 1.2e-06 3.38e-07 1.24e-06 3.71e-07 1.38e-06 5.79e-07 1.83e-06 2.57e-07 4.26e-07 7.95e-07 8.01e-07 5.45e-07 5.88e-07 6.7e-07 4.77e-07 1.22e-06 8.96e-07 6.1e-07 1.97e-06 3.87e-07 7.27e-07 7.22e-07 1.25e-06 1.21e-06 5.58e-07 7.32e-08 2.31e-07 5.24e-07 3.92e-07 4.34e-07 4.16e-07 1.57e-07 1.96e-07 1.16e-07 2.56e-07 1.53e-06 6.12e-08 1.14e-07 1.72e-07 7.91e-08 2.14e-07 8.81e-08 1.07e-07
ENSG00000174348 PODN -99913 4.29e-06 4.86e-06 9.13e-07 2.63e-06 1.57e-06 1.53e-06 4.21e-06 9.79e-07 5.14e-06 2.43e-06 5.21e-06 3.52e-06 7.1e-06 2.46e-06 1.43e-06 3.64e-06 1.98e-06 3.57e-06 1.47e-06 1.15e-06 3.1e-06 4.85e-06 4.13e-06 1.48e-06 6.37e-06 1.95e-06 2.55e-06 1.85e-06 4.36e-06 4.31e-06 2.72e-06 4.91e-07 5.68e-07 1.47e-06 2.15e-06 1.11e-06 9.66e-07 4.58e-07 9.12e-07 4.26e-07 7.35e-07 5.58e-06 3.82e-07 1.66e-07 5.94e-07 7.77e-07 1.06e-06 4.43e-07 4.39e-07
ENSG00000226147 TUBBP10 -32587 1.15e-05 1.31e-05 2.54e-06 8.12e-06 2.62e-06 6.16e-06 1.76e-05 2.46e-06 1.32e-05 6.72e-06 1.75e-05 6.86e-06 2.3e-05 4.99e-06 4.13e-06 8.93e-06 6.94e-06 1.17e-05 4.02e-06 3.8e-06 7.03e-06 1.26e-05 1.31e-05 4.71e-06 2.4e-05 5.01e-06 7.59e-06 6.14e-06 1.51e-05 1.36e-05 8.34e-06 1.03e-06 1.47e-06 4.09e-06 6.02e-06 3.86e-06 1.75e-06 2.41e-06 2.7e-06 1.84e-06 1.64e-06 1.63e-05 1.69e-06 4.02e-07 1.7e-06 2.45e-06 2.6e-06 1.06e-06 9.96e-07