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Genes within 1Mb (chr1:55056752:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116133 DHCR24 169557 sc-eQTL 5.13e-01 -0.114 0.175 0.052 DC L1
ENSG00000116221 MRPL37 872711 sc-eQTL 6.61e-01 -0.0908 0.207 0.052 DC L1
ENSG00000157216 SSBP3 643273 sc-eQTL 1.77e-01 0.249 0.184 0.052 DC L1
ENSG00000162390 ACOT11 514495 sc-eQTL 1.14e-01 -0.28 0.176 0.052 DC L1
ENSG00000162402 USP24 -158612 sc-eQTL 2.25e-01 0.13 0.107 0.052 DC L1
ENSG00000215883 CYB5RL 856716 sc-eQTL 4.57e-01 0.144 0.193 0.052 DC L1
ENSG00000243725 TTC4 340891 sc-eQTL 8.95e-01 0.0276 0.208 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 255429 sc-eQTL 5.03e-01 -0.107 0.159 0.054 B_Activated L2
ENSG00000116133 DHCR24 169557 sc-eQTL 8.84e-01 0.0273 0.187 0.054 B_Activated L2
ENSG00000116221 MRPL37 872711 sc-eQTL 9.79e-01 -0.00621 0.23 0.054 B_Activated L2
ENSG00000157216 SSBP3 643273 sc-eQTL 3.05e-01 -0.214 0.208 0.054 B_Activated L2
ENSG00000162402 USP24 -158612 sc-eQTL 9.78e-01 0.00562 0.203 0.054 B_Activated L2
ENSG00000215883 CYB5RL 856716 sc-eQTL 9.13e-01 -0.0197 0.18 0.054 B_Activated L2
ENSG00000243725 TTC4 340891 sc-eQTL 9.48e-02 0.325 0.193 0.054 B_Activated L2
ENSG00000006555 TTC22 255429 sc-eQTL 1.60e-01 0.277 0.197 0.052 CD4_CTL L2
ENSG00000116221 MRPL37 872711 sc-eQTL 4.18e-01 -0.185 0.227 0.052 CD4_CTL L2
ENSG00000157216 SSBP3 643273 sc-eQTL 2.70e-02 -0.308 0.138 0.052 CD4_CTL L2
ENSG00000162402 USP24 -158612 sc-eQTL 8.53e-01 -0.0357 0.192 0.052 CD4_CTL L2
ENSG00000243725 TTC4 340891 sc-eQTL 7.24e-01 0.0761 0.215 0.052 CD4_CTL L2
ENSG00000006555 TTC22 255429 sc-eQTL 6.92e-01 -0.0855 0.215 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 872711 sc-eQTL 6.89e-01 0.0867 0.216 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 643273 sc-eQTL 9.37e-01 -0.0148 0.187 0.051 CD8_TCM L2
ENSG00000162402 USP24 -158612 sc-eQTL 6.89e-01 0.0727 0.182 0.051 CD8_TCM L2
ENSG00000243725 TTC4 340891 sc-eQTL 9.13e-01 -0.0241 0.221 0.051 CD8_TCM L2
ENSG00000006555 TTC22 255429 sc-eQTL 1.13e-01 0.318 0.2 0.053 CD8_TEM L2
ENSG00000116221 MRPL37 872711 sc-eQTL 2.87e-01 0.219 0.205 0.053 CD8_TEM L2
ENSG00000157216 SSBP3 643273 sc-eQTL 6.32e-03 0.527 0.191 0.053 CD8_TEM L2
ENSG00000162402 USP24 -158612 sc-eQTL 3.06e-01 0.21 0.204 0.053 CD8_TEM L2
ENSG00000243725 TTC4 340891 sc-eQTL 1.45e-01 0.303 0.207 0.053 CD8_TEM L2
ENSG00000006555 TTC22 255429 sc-eQTL 3.14e-01 -0.218 0.216 0.051 NK_CD56bright L2
ENSG00000116133 DHCR24 169557 sc-eQTL 3.41e-01 -0.182 0.191 0.051 NK_CD56bright L2
ENSG00000116221 MRPL37 872711 sc-eQTL 4.46e-01 0.168 0.22 0.051 NK_CD56bright L2
ENSG00000157216 SSBP3 643273 sc-eQTL 2.66e-01 -0.184 0.165 0.051 NK_CD56bright L2
ENSG00000162398 LEXM 250689 sc-eQTL 1.38e-02 0.479 0.193 0.051 NK_CD56bright L2
ENSG00000162402 USP24 -158612 sc-eQTL 2.63e-01 0.188 0.168 0.051 NK_CD56bright L2
ENSG00000243725 TTC4 340891 sc-eQTL 3.30e-01 0.207 0.212 0.051 NK_CD56bright L2
ENSG00000006555 TTC22 255429 sc-eQTL 4.39e-01 -0.163 0.21 0.05 NK_HLA L2
ENSG00000116133 DHCR24 169557 sc-eQTL 9.87e-01 -0.00324 0.205 0.05 NK_HLA L2
ENSG00000116221 MRPL37 872711 sc-eQTL 9.12e-01 0.0239 0.217 0.05 NK_HLA L2
ENSG00000157216 SSBP3 643273 sc-eQTL 1.64e-01 0.246 0.176 0.05 NK_HLA L2
ENSG00000162398 LEXM 250689 sc-eQTL 1.60e-01 0.28 0.198 0.05 NK_HLA L2
ENSG00000162402 USP24 -158612 sc-eQTL 4.82e-01 0.103 0.146 0.05 NK_HLA L2
ENSG00000243725 TTC4 340891 sc-eQTL 9.31e-01 0.0189 0.218 0.05 NK_HLA L2
ENSG00000006555 TTC22 255429 sc-eQTL 8.19e-01 -0.0438 0.191 0.05 Pro_T L2
ENSG00000116133 DHCR24 169557 sc-eQTL 2.66e-01 -0.181 0.162 0.05 Pro_T L2
ENSG00000116221 MRPL37 872711 sc-eQTL 2.98e-01 0.14 0.134 0.05 Pro_T L2
ENSG00000157216 SSBP3 643273 sc-eQTL 8.84e-01 -0.0221 0.151 0.05 Pro_T L2
ENSG00000162402 USP24 -158612 sc-eQTL 5.47e-01 0.111 0.184 0.05 Pro_T L2
ENSG00000215883 CYB5RL 856716 sc-eQTL 4.41e-02 0.365 0.18 0.05 Pro_T L2
ENSG00000243725 TTC4 340891 sc-eQTL 5.52e-01 -0.121 0.202 0.05 Pro_T L2
ENSG00000116133 DHCR24 169557 sc-eQTL 6.10e-01 -0.0872 0.171 0.051 cDC L2
ENSG00000116221 MRPL37 872711 sc-eQTL 7.46e-01 -0.071 0.219 0.051 cDC L2
ENSG00000157216 SSBP3 643273 sc-eQTL 6.72e-02 0.368 0.2 0.051 cDC L2
ENSG00000162390 ACOT11 514495 sc-eQTL 1.53e-01 -0.268 0.187 0.051 cDC L2
ENSG00000162402 USP24 -158612 sc-eQTL 5.73e-01 -0.119 0.21 0.051 cDC L2
ENSG00000215883 CYB5RL 856716 sc-eQTL 3.77e-02 0.374 0.179 0.051 cDC L2
ENSG00000243725 TTC4 340891 sc-eQTL 9.21e-01 -0.0216 0.216 0.051 cDC L2
ENSG00000006555 TTC22 255429 sc-eQTL 1.29e-01 -0.294 0.193 0.055 gdT L2
ENSG00000116133 DHCR24 169557 sc-eQTL 4.12e-01 0.178 0.216 0.055 gdT L2
ENSG00000116221 MRPL37 872711 sc-eQTL 2.01e-01 0.323 0.251 0.055 gdT L2
ENSG00000157216 SSBP3 643273 sc-eQTL 1.73e-01 -0.21 0.154 0.055 gdT L2
ENSG00000162402 USP24 -158612 sc-eQTL 6.81e-01 -0.0856 0.208 0.055 gdT L2
ENSG00000215883 CYB5RL 856716 sc-eQTL 9.87e-01 0.00346 0.216 0.055 gdT L2
ENSG00000243725 TTC4 340891 sc-eQTL 1.47e-02 -0.589 0.239 0.055 gdT L2
ENSG00000116133 DHCR24 169557 sc-eQTL 3.57e-02 0.322 0.152 0.051 intMono L2
ENSG00000116221 MRPL37 872711 sc-eQTL 8.73e-01 0.0345 0.215 0.051 intMono L2
ENSG00000157216 SSBP3 643273 sc-eQTL 9.29e-01 0.0195 0.22 0.051 intMono L2
ENSG00000162402 USP24 -158612 sc-eQTL 3.16e-01 0.197 0.195 0.051 intMono L2
ENSG00000243725 TTC4 340891 sc-eQTL 6.40e-01 0.0975 0.208 0.051 intMono L2
ENSG00000116133 DHCR24 169557 sc-eQTL 3.25e-01 -0.172 0.175 0.054 pDC L2
ENSG00000116221 MRPL37 872711 sc-eQTL 8.19e-01 -0.0512 0.223 0.054 pDC L2
ENSG00000157216 SSBP3 643273 sc-eQTL 9.19e-01 -0.0201 0.198 0.054 pDC L2
ENSG00000162390 ACOT11 514495 sc-eQTL 2.96e-01 -0.0871 0.083 0.054 pDC L2
ENSG00000162402 USP24 -158612 sc-eQTL 3.67e-01 0.127 0.14 0.054 pDC L2
ENSG00000215883 CYB5RL 856716 sc-eQTL 9.52e-01 -0.0115 0.192 0.054 pDC L2
ENSG00000243725 TTC4 340891 sc-eQTL 4.05e-01 0.185 0.222 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162398 LEXM 250689 eQTL 0.0407 0.1 0.0489 0.0 0.0 0.0451
ENSG00000169174 PCSK9 17204 pQTL 0.0325 -0.13 0.0606 0.0 0.0 0.0513
ENSG00000169174 PCSK9 17204 eQTL 0.01 -0.103 0.0398 0.0 0.0 0.0451

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162390 \N 514495 7.23e-07 4.93e-07 1.02e-07 3.61e-07 9.33e-08 1.74e-07 5.2e-07 1.31e-07 3.82e-07 2.28e-07 5.73e-07 3.5e-07 7.02e-07 1.17e-07 2.07e-07 2.08e-07 2.48e-07 3.67e-07 2.12e-07 1.53e-07 2.05e-07 3.76e-07 3.08e-07 1.58e-07 6.59e-07 2.4e-07 2.52e-07 2.63e-07 3.56e-07 4.51e-07 2.54e-07 6.56e-08 5.39e-08 1.38e-07 3e-07 9.51e-08 1.05e-07 9.33e-08 5.93e-08 2.74e-08 1.18e-07 4.68e-07 2.71e-08 1.94e-08 1.33e-07 1.31e-08 8.24e-08 1.18e-08 5.19e-08
ENSG00000162398 LEXM 250689 1.39e-06 1.95e-06 2.52e-07 1.3e-06 4.89e-07 6.68e-07 1.26e-06 4.01e-07 1.72e-06 7.25e-07 1.9e-06 1.29e-06 2.63e-06 5.76e-07 3.28e-07 9.61e-07 1.12e-06 1.16e-06 5.46e-07 6.44e-07 6.18e-07 1.9e-06 1.58e-06 8.09e-07 2.41e-06 8.55e-07 1.03e-06 1.1e-06 1.66e-06 1.39e-06 7.52e-07 2.83e-07 3.95e-07 6.23e-07 7.57e-07 6.16e-07 6.99e-07 3.37e-07 4.83e-07 2.17e-07 3.04e-07 2.22e-06 3.51e-07 1.41e-07 3.75e-07 3.32e-07 2.9e-07 1.69e-07 2.74e-07