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Genes within 1Mb (chr1:54210352:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -590971 sc-eQTL 7.75e-01 0.0558 0.195 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 320554 sc-eQTL 5.74e-01 -0.118 0.209 0.05 CD8_TEM L2
ENSG00000058804 NDC1 371889 sc-eQTL 6.73e-01 -0.0839 0.199 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 264423 sc-eQTL 6.60e-01 -0.0829 0.188 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 156768 sc-eQTL 4.64e-01 0.149 0.203 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 156848 sc-eQTL 4.20e-01 0.159 0.196 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 264267 sc-eQTL 1.35e-01 0.316 0.211 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 26311 sc-eQTL 2.79e-01 -0.216 0.199 0.05 CD8_TEM L2
ENSG00000157193 LRP8 881883 sc-eQTL 6.66e-01 0.0856 0.198 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -203127 sc-eQTL 8.48e-01 -0.0362 0.189 0.05 CD8_TEM L2
ENSG00000162384 CZIB 989718 sc-eQTL 1.26e-01 0.324 0.211 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 971834 sc-eQTL 3.20e-01 0.178 0.179 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -505509 sc-eQTL 7.72e-01 -0.0585 0.202 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -590971 sc-eQTL 2.74e-01 -0.253 0.23 0.059 PB L2
ENSG00000058799 YIPF1 320554 sc-eQTL 3.08e-01 0.166 0.162 0.059 PB L2
ENSG00000058804 NDC1 371889 sc-eQTL 3.55e-02 -0.506 0.238 0.059 PB L2
ENSG00000081870 HSPB11 264423 sc-eQTL 7.50e-01 0.0652 0.204 0.059 PB L2
ENSG00000116133 DHCR24 -676843 sc-eQTL 4.50e-02 -0.409 0.202 0.059 PB L2
ENSG00000116205 TCEANC2 156768 sc-eQTL 6.94e-01 0.0985 0.25 0.059 PB L2
ENSG00000116209 TMEM59 156848 sc-eQTL 6.12e-01 -0.053 0.104 0.059 PB L2
ENSG00000116212 LRRC42 264267 sc-eQTL 6.45e-01 -0.109 0.235 0.059 PB L2
ENSG00000116221 MRPL37 26311 sc-eQTL 1.19e-01 -0.295 0.188 0.059 PB L2
ENSG00000157193 LRP8 881883 sc-eQTL 2.29e-02 -0.538 0.233 0.059 PB L2
ENSG00000157216 SSBP3 -203127 sc-eQTL 4.71e-01 -0.158 0.219 0.059 PB L2
ENSG00000162384 CZIB 989718 sc-eQTL 2.84e-01 0.267 0.248 0.059 PB L2
ENSG00000162385 MAGOH 971834 sc-eQTL 3.42e-01 0.219 0.23 0.059 PB L2
ENSG00000215883 CYB5RL 10316 sc-eQTL 1.50e-01 0.371 0.256 0.059 PB L2
ENSG00000230138 LINC02812 842107 sc-eQTL 1.21e-01 -0.286 0.183 0.059 PB L2
ENSG00000243725 TTC4 -505509 sc-eQTL 4.28e-02 0.485 0.237 0.059 PB L2
ENSG00000006555 TTC22 -590971 sc-eQTL 9.57e-01 0.00972 0.181 0.052 gdT L2
ENSG00000058799 YIPF1 320554 sc-eQTL 8.30e-01 0.0484 0.225 0.052 gdT L2
ENSG00000058804 NDC1 371889 sc-eQTL 6.95e-01 0.0866 0.22 0.052 gdT L2
ENSG00000081870 HSPB11 264423 sc-eQTL 5.03e-01 0.169 0.251 0.052 gdT L2
ENSG00000116133 DHCR24 -676843 sc-eQTL 2.68e-01 0.223 0.201 0.052 gdT L2
ENSG00000116205 TCEANC2 156768 sc-eQTL 1.14e-01 -0.319 0.201 0.052 gdT L2
ENSG00000116209 TMEM59 156848 sc-eQTL 1.38e-01 0.304 0.204 0.052 gdT L2
ENSG00000116212 LRRC42 264267 sc-eQTL 7.28e-01 -0.0841 0.241 0.052 gdT L2
ENSG00000116221 MRPL37 26311 sc-eQTL 3.83e-01 0.205 0.235 0.052 gdT L2
ENSG00000157193 LRP8 881883 sc-eQTL 5.00e-02 0.455 0.23 0.052 gdT L2
ENSG00000157216 SSBP3 -203127 sc-eQTL 9.78e-02 -0.238 0.143 0.052 gdT L2
ENSG00000162384 CZIB 989718 sc-eQTL 4.02e-01 0.186 0.221 0.052 gdT L2
ENSG00000162385 MAGOH 971834 sc-eQTL 9.85e-02 0.373 0.224 0.052 gdT L2
ENSG00000215883 CYB5RL 10316 sc-eQTL 5.26e-01 0.128 0.201 0.052 gdT L2
ENSG00000243725 TTC4 -505509 sc-eQTL 7.96e-01 0.0588 0.227 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 -829196 pQTL 0.0321 0.144 0.0672 0.0 0.0 0.0452
ENSG00000198711 SSBP3-AS1 -26088 eQTL 6.12e-03 -0.128 0.0464 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina