logo

Genes within 1Mb (chr1:54202754:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -598569 sc-eQTL 7.75e-01 0.0558 0.195 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 312956 sc-eQTL 5.74e-01 -0.118 0.209 0.05 CD8_TEM L2
ENSG00000058804 NDC1 364291 sc-eQTL 6.73e-01 -0.0839 0.199 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 256825 sc-eQTL 6.60e-01 -0.0829 0.188 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 149170 sc-eQTL 4.64e-01 0.149 0.203 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 149250 sc-eQTL 4.20e-01 0.159 0.196 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 256669 sc-eQTL 1.35e-01 0.316 0.211 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 18713 sc-eQTL 2.79e-01 -0.216 0.199 0.05 CD8_TEM L2
ENSG00000157193 LRP8 874285 sc-eQTL 6.66e-01 0.0856 0.198 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -210725 sc-eQTL 8.48e-01 -0.0362 0.189 0.05 CD8_TEM L2
ENSG00000162384 CZIB 982120 sc-eQTL 1.26e-01 0.324 0.211 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 964236 sc-eQTL 3.20e-01 0.178 0.179 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -513107 sc-eQTL 7.72e-01 -0.0585 0.202 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -598569 sc-eQTL 2.74e-01 -0.253 0.23 0.059 PB L2
ENSG00000058799 YIPF1 312956 sc-eQTL 3.08e-01 0.166 0.162 0.059 PB L2
ENSG00000058804 NDC1 364291 sc-eQTL 3.55e-02 -0.506 0.238 0.059 PB L2
ENSG00000081870 HSPB11 256825 sc-eQTL 7.50e-01 0.0652 0.204 0.059 PB L2
ENSG00000116133 DHCR24 -684441 sc-eQTL 4.50e-02 -0.409 0.202 0.059 PB L2
ENSG00000116205 TCEANC2 149170 sc-eQTL 6.94e-01 0.0985 0.25 0.059 PB L2
ENSG00000116209 TMEM59 149250 sc-eQTL 6.12e-01 -0.053 0.104 0.059 PB L2
ENSG00000116212 LRRC42 256669 sc-eQTL 6.45e-01 -0.109 0.235 0.059 PB L2
ENSG00000116221 MRPL37 18713 sc-eQTL 1.19e-01 -0.295 0.188 0.059 PB L2
ENSG00000157193 LRP8 874285 sc-eQTL 2.29e-02 -0.538 0.233 0.059 PB L2
ENSG00000157216 SSBP3 -210725 sc-eQTL 4.71e-01 -0.158 0.219 0.059 PB L2
ENSG00000162384 CZIB 982120 sc-eQTL 2.84e-01 0.267 0.248 0.059 PB L2
ENSG00000162385 MAGOH 964236 sc-eQTL 3.42e-01 0.219 0.23 0.059 PB L2
ENSG00000215883 CYB5RL 2718 sc-eQTL 1.50e-01 0.371 0.256 0.059 PB L2
ENSG00000230138 LINC02812 834509 sc-eQTL 1.21e-01 -0.286 0.183 0.059 PB L2
ENSG00000243725 TTC4 -513107 sc-eQTL 4.28e-02 0.485 0.237 0.059 PB L2
ENSG00000006555 TTC22 -598569 sc-eQTL 9.57e-01 0.00972 0.181 0.052 gdT L2
ENSG00000058799 YIPF1 312956 sc-eQTL 8.30e-01 0.0484 0.225 0.052 gdT L2
ENSG00000058804 NDC1 364291 sc-eQTL 6.95e-01 0.0866 0.22 0.052 gdT L2
ENSG00000081870 HSPB11 256825 sc-eQTL 5.03e-01 0.169 0.251 0.052 gdT L2
ENSG00000116133 DHCR24 -684441 sc-eQTL 2.68e-01 0.223 0.201 0.052 gdT L2
ENSG00000116205 TCEANC2 149170 sc-eQTL 1.14e-01 -0.319 0.201 0.052 gdT L2
ENSG00000116209 TMEM59 149250 sc-eQTL 1.38e-01 0.304 0.204 0.052 gdT L2
ENSG00000116212 LRRC42 256669 sc-eQTL 7.28e-01 -0.0841 0.241 0.052 gdT L2
ENSG00000116221 MRPL37 18713 sc-eQTL 3.83e-01 0.205 0.235 0.052 gdT L2
ENSG00000157193 LRP8 874285 sc-eQTL 5.00e-02 0.455 0.23 0.052 gdT L2
ENSG00000157216 SSBP3 -210725 sc-eQTL 9.78e-02 -0.238 0.143 0.052 gdT L2
ENSG00000162384 CZIB 982120 sc-eQTL 4.02e-01 0.186 0.221 0.052 gdT L2
ENSG00000162385 MAGOH 964236 sc-eQTL 9.85e-02 0.373 0.224 0.052 gdT L2
ENSG00000215883 CYB5RL 2718 sc-eQTL 5.26e-01 0.128 0.201 0.052 gdT L2
ENSG00000243725 TTC4 -513107 sc-eQTL 7.96e-01 0.0588 0.227 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000169174 PCSK9 -836794 pQTL 0.0244 0.152 0.0676 0.0 0.0 0.0437
ENSG00000198711 SSBP3-AS1 -33686 eQTL 7.06e-03 -0.127 0.0471 0.0 0.0 0.0442

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina