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Genes within 1Mb (chr1:53846387:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -954936 sc-eQTL 3.69e-01 0.14 0.156 0.059 B_Activated L2
ENSG00000058799 YIPF1 -43411 sc-eQTL 5.83e-01 0.116 0.211 0.059 B_Activated L2
ENSG00000058804 NDC1 7924 sc-eQTL 9.32e-01 -0.0169 0.199 0.059 B_Activated L2
ENSG00000081870 HSPB11 -99542 sc-eQTL 8.59e-01 0.0381 0.215 0.059 B_Activated L2
ENSG00000116171 SCP2 919111 sc-eQTL 7.95e-02 -0.356 0.202 0.059 B_Activated L2
ENSG00000116205 TCEANC2 -207197 sc-eQTL 8.12e-02 0.342 0.195 0.059 B_Activated L2
ENSG00000116209 TMEM59 -207117 sc-eQTL 2.63e-01 -0.234 0.208 0.059 B_Activated L2
ENSG00000116212 LRRC42 -99698 sc-eQTL 5.97e-01 0.107 0.203 0.059 B_Activated L2
ENSG00000116221 MRPL37 -337654 sc-eQTL 1.33e-01 -0.339 0.224 0.059 B_Activated L2
ENSG00000121310 ECHDC2 919175 sc-eQTL 8.51e-01 0.0432 0.229 0.059 B_Activated L2
ENSG00000157184 CPT2 649595 sc-eQTL 6.67e-01 0.0845 0.196 0.059 B_Activated L2
ENSG00000157193 LRP8 517918 sc-eQTL 8.41e-01 -0.0382 0.19 0.059 B_Activated L2
ENSG00000157216 SSBP3 -567092 sc-eQTL 3.57e-01 -0.188 0.204 0.059 B_Activated L2
ENSG00000162384 CZIB 625753 sc-eQTL 7.30e-01 -0.0763 0.22 0.059 B_Activated L2
ENSG00000162385 MAGOH 607869 sc-eQTL 4.79e-01 -0.162 0.229 0.059 B_Activated L2
ENSG00000215883 CYB5RL -353649 sc-eQTL 6.34e-01 0.084 0.176 0.059 B_Activated L2
ENSG00000230138 LINC02812 478142 sc-eQTL 5.91e-02 0.361 0.19 0.059 B_Activated L2
ENSG00000243725 TTC4 -869474 sc-eQTL 1.75e-01 0.259 0.19 0.059 B_Activated L2
ENSG00000006555 TTC22 -954936 sc-eQTL 5.17e-01 -0.125 0.193 0.05 Pro_T L2
ENSG00000058799 YIPF1 -43411 sc-eQTL 8.30e-01 0.0391 0.183 0.05 Pro_T L2
ENSG00000058804 NDC1 7924 sc-eQTL 8.87e-01 -0.0206 0.145 0.05 Pro_T L2
ENSG00000081870 HSPB11 -99542 sc-eQTL 9.35e-01 -0.0106 0.13 0.05 Pro_T L2
ENSG00000116171 SCP2 919111 sc-eQTL 9.58e-01 -0.0093 0.175 0.05 Pro_T L2
ENSG00000116205 TCEANC2 -207197 sc-eQTL 9.88e-01 -0.00301 0.2 0.05 Pro_T L2
ENSG00000116209 TMEM59 -207117 sc-eQTL 5.71e-01 -0.0788 0.139 0.05 Pro_T L2
ENSG00000116212 LRRC42 -99698 sc-eQTL 8.49e-01 0.0339 0.179 0.05 Pro_T L2
ENSG00000116221 MRPL37 -337654 sc-eQTL 5.72e-01 -0.077 0.136 0.05 Pro_T L2
ENSG00000121310 ECHDC2 919175 sc-eQTL 5.53e-01 -0.114 0.191 0.05 Pro_T L2
ENSG00000157184 CPT2 649595 sc-eQTL 2.92e-01 -0.198 0.187 0.05 Pro_T L2
ENSG00000157193 LRP8 517918 sc-eQTL 1.22e-01 -0.287 0.185 0.05 Pro_T L2
ENSG00000157216 SSBP3 -567092 sc-eQTL 2.38e-01 0.18 0.152 0.05 Pro_T L2
ENSG00000162383 SLC1A7 703755 sc-eQTL 4.53e-01 -0.133 0.177 0.05 Pro_T L2
ENSG00000162384 CZIB 625753 sc-eQTL 5.87e-01 -0.114 0.211 0.05 Pro_T L2
ENSG00000162385 MAGOH 607869 sc-eQTL 7.62e-01 -0.0516 0.171 0.05 Pro_T L2
ENSG00000215883 CYB5RL -353649 sc-eQTL 3.83e-01 0.16 0.183 0.05 Pro_T L2
ENSG00000243725 TTC4 -869474 sc-eQTL 5.30e-01 -0.128 0.204 0.05 Pro_T L2
ENSG00000058799 YIPF1 -43411 sc-eQTL 7.45e-01 0.0673 0.206 0.051 intMono L2
ENSG00000058804 NDC1 7924 sc-eQTL 1.50e-01 -0.304 0.21 0.051 intMono L2
ENSG00000081870 HSPB11 -99542 sc-eQTL 8.69e-01 0.0335 0.202 0.051 intMono L2
ENSG00000116171 SCP2 919111 sc-eQTL 7.01e-01 0.0666 0.173 0.051 intMono L2
ENSG00000116205 TCEANC2 -207197 sc-eQTL 3.90e-01 -0.165 0.192 0.051 intMono L2
ENSG00000116209 TMEM59 -207117 sc-eQTL 5.57e-01 -0.083 0.141 0.051 intMono L2
ENSG00000116212 LRRC42 -99698 sc-eQTL 1.87e-01 -0.292 0.221 0.051 intMono L2
ENSG00000116221 MRPL37 -337654 sc-eQTL 7.60e-01 0.066 0.216 0.051 intMono L2
ENSG00000121310 ECHDC2 919175 sc-eQTL 9.86e-01 0.00369 0.21 0.051 intMono L2
ENSG00000157184 CPT2 649595 sc-eQTL 4.80e-01 -0.149 0.211 0.051 intMono L2
ENSG00000157193 LRP8 517918 sc-eQTL 6.30e-01 -0.0979 0.203 0.051 intMono L2
ENSG00000157216 SSBP3 -567092 sc-eQTL 6.65e-01 0.0954 0.22 0.051 intMono L2
ENSG00000162384 CZIB 625753 sc-eQTL 3.57e-01 -0.195 0.211 0.051 intMono L2
ENSG00000162385 MAGOH 607869 sc-eQTL 2.67e-02 0.385 0.173 0.051 intMono L2
ENSG00000243725 TTC4 -869474 sc-eQTL 5.33e-01 0.131 0.209 0.051 intMono L2
ENSG00000058799 YIPF1 -43411 sc-eQTL 9.61e-01 -0.0101 0.206 0.052 ncMono L2
ENSG00000058804 NDC1 7924 sc-eQTL 9.39e-01 0.0155 0.203 0.052 ncMono L2
ENSG00000081870 HSPB11 -99542 sc-eQTL 3.68e-01 0.195 0.216 0.052 ncMono L2
ENSG00000116171 SCP2 919111 sc-eQTL 9.46e-01 -0.0138 0.202 0.052 ncMono L2
ENSG00000116205 TCEANC2 -207197 sc-eQTL 7.15e-01 -0.0709 0.194 0.052 ncMono L2
ENSG00000116209 TMEM59 -207117 sc-eQTL 1.09e-01 0.248 0.154 0.052 ncMono L2
ENSG00000116212 LRRC42 -99698 sc-eQTL 8.76e-01 -0.033 0.211 0.052 ncMono L2
ENSG00000116221 MRPL37 -337654 sc-eQTL 8.72e-01 0.0323 0.2 0.052 ncMono L2
ENSG00000121310 ECHDC2 919175 sc-eQTL 8.14e-01 -0.049 0.208 0.052 ncMono L2
ENSG00000157184 CPT2 649595 sc-eQTL 9.58e-01 0.01 0.188 0.052 ncMono L2
ENSG00000157193 LRP8 517918 sc-eQTL 7.96e-01 0.0566 0.218 0.052 ncMono L2
ENSG00000157216 SSBP3 -567092 sc-eQTL 6.26e-01 0.107 0.218 0.052 ncMono L2
ENSG00000162384 CZIB 625753 sc-eQTL 5.55e-01 0.124 0.21 0.052 ncMono L2
ENSG00000162385 MAGOH 607869 sc-eQTL 6.66e-01 0.0789 0.182 0.052 ncMono L2
ENSG00000243725 TTC4 -869474 sc-eQTL 4.13e-01 0.169 0.206 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -43411 eQTL 1.18e-02 0.0403 0.016 0.0 0.0 0.0569
ENSG00000116209 TMEM59 -207117 eQTL 0.0453 -0.0366 0.0183 0.0 0.0 0.0569
ENSG00000116212 LRRC42 -99698 eQTL 0.000591 0.146 0.0424 0.0108 0.00366 0.0569

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -43411 1.09e-05 1.18e-05 1.51e-06 6.69e-06 2.48e-06 5.16e-06 1.19e-05 2.18e-06 9.81e-06 5.42e-06 1.36e-05 6.14e-06 1.79e-05 3.96e-06 3.71e-06 6.7e-06 5.17e-06 7.92e-06 2.98e-06 2.83e-06 5.94e-06 1.04e-05 9.26e-06 3.39e-06 1.67e-05 4.56e-06 6.12e-06 4.71e-06 1.16e-05 9.8e-06 5.94e-06 1.07e-06 1.19e-06 3.44e-06 5.11e-06 2.86e-06 1.76e-06 1.9e-06 2.17e-06 1.1e-06 9.48e-07 1.37e-05 1.38e-06 1.61e-07 7.93e-07 1.76e-06 1.82e-06 7.25e-07 4.64e-07
ENSG00000116171 \N 919111 2.74e-07 1.25e-07 4.08e-08 1.82e-07 9.16e-08 9.76e-08 1.49e-07 5.37e-08 1.44e-07 4.74e-08 1.57e-07 8.59e-08 1.41e-07 6.76e-08 6.17e-08 7.3e-08 3.98e-08 1.27e-07 5.82e-08 4.1e-08 1.08e-07 1.28e-07 1.39e-07 3.49e-08 1.4e-07 1.14e-07 1.07e-07 9.65e-08 1.08e-07 1.02e-07 9.64e-08 3.87e-08 3.35e-08 8.34e-08 6.34e-08 3.94e-08 5.37e-08 9.26e-08 6.54e-08 3.8e-08 5.03e-08 1.35e-07 4.89e-08 1.49e-08 4.7e-08 1.84e-08 1.21e-07 3.83e-09 4.85e-08
ENSG00000116212 LRRC42 -99698 4.89e-06 5.1e-06 9.13e-07 3.21e-06 1.64e-06 1.54e-06 5.49e-06 1.04e-06 5.2e-06 2.59e-06 5.99e-06 3.26e-06 7.51e-06 1.92e-06 1.13e-06 3.83e-06 1.82e-06 3.71e-06 1.45e-06 1.19e-06 2.9e-06 4.91e-06 4.64e-06 1.35e-06 7.74e-06 1.95e-06 2.27e-06 1.83e-06 4.41e-06 4.3e-06 2.83e-06 4.91e-07 4.63e-07 1.55e-06 2e-06 9.71e-07 9.63e-07 4.59e-07 8.68e-07 5.01e-07 5.18e-07 6.29e-06 3.83e-07 1.84e-07 4.86e-07 1.32e-06 9.76e-07 4.43e-07 3.24e-07