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Genes within 1Mb (chr1:53518546:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -371252 sc-eQTL 1.40e-01 -0.323 0.218 0.051 B_Activated L2
ENSG00000058804 NDC1 -319917 sc-eQTL 5.98e-01 0.109 0.206 0.051 B_Activated L2
ENSG00000081870 HSPB11 -427383 sc-eQTL 1.12e-01 -0.353 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 916175 sc-eQTL 1.65e-01 -0.311 0.223 0.051 B_Activated L2
ENSG00000116171 SCP2 591270 sc-eQTL 9.05e-02 -0.357 0.209 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -535038 sc-eQTL 7.53e-01 -0.0644 0.204 0.051 B_Activated L2
ENSG00000116209 TMEM59 -534958 sc-eQTL 4.38e-01 0.168 0.217 0.051 B_Activated L2
ENSG00000116212 LRRC42 -427539 sc-eQTL 5.13e-02 0.408 0.208 0.051 B_Activated L2
ENSG00000116221 MRPL37 -665495 sc-eQTL 7.60e-01 0.0717 0.234 0.051 B_Activated L2
ENSG00000121310 ECHDC2 591334 sc-eQTL 5.22e-01 0.152 0.237 0.051 B_Activated L2
ENSG00000134744 TUT4 965059 sc-eQTL 2.60e-01 0.253 0.224 0.051 B_Activated L2
ENSG00000157184 CPT2 321754 sc-eQTL 9.05e-01 -0.0245 0.204 0.051 B_Activated L2
ENSG00000157193 LRP8 190077 sc-eQTL 6.47e-01 0.0903 0.197 0.051 B_Activated L2
ENSG00000157216 SSBP3 -894933 sc-eQTL 6.60e-01 0.0935 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 820199 sc-eQTL 2.84e-01 -0.203 0.189 0.051 B_Activated L2
ENSG00000162378 ZYG11B 792093 sc-eQTL 4.39e-01 0.18 0.232 0.051 B_Activated L2
ENSG00000162384 CZIB 297912 sc-eQTL 6.55e-01 0.102 0.229 0.051 B_Activated L2
ENSG00000162385 MAGOH 280028 sc-eQTL 7.85e-01 -0.0648 0.238 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 885378 sc-eQTL 2.60e-01 0.23 0.203 0.051 B_Activated L2
ENSG00000215883 CYB5RL -681490 sc-eQTL 1.97e-01 0.235 0.182 0.051 B_Activated L2
ENSG00000230138 LINC02812 150301 sc-eQTL 1.75e-01 0.27 0.198 0.051 B_Activated L2
ENSG00000058799 YIPF1 -371252 sc-eQTL 9.50e-01 0.00934 0.148 0.063 PB L2
ENSG00000058804 NDC1 -319917 sc-eQTL 1.70e-01 -0.303 0.219 0.063 PB L2
ENSG00000081870 HSPB11 -427383 sc-eQTL 3.41e-01 0.177 0.185 0.063 PB L2
ENSG00000116157 GPX7 916175 sc-eQTL 3.78e-02 0.383 0.182 0.063 PB L2
ENSG00000116171 SCP2 591270 sc-eQTL 8.35e-01 0.0337 0.161 0.063 PB L2
ENSG00000116205 TCEANC2 -535038 sc-eQTL 5.10e-01 -0.15 0.227 0.063 PB L2
ENSG00000116209 TMEM59 -534958 sc-eQTL 8.85e-01 -0.0138 0.0952 0.063 PB L2
ENSG00000116212 LRRC42 -427539 sc-eQTL 1.35e-01 -0.32 0.213 0.063 PB L2
ENSG00000116221 MRPL37 -665495 sc-eQTL 8.08e-01 0.0421 0.173 0.063 PB L2
ENSG00000121310 ECHDC2 591334 sc-eQTL 6.75e-01 0.101 0.239 0.063 PB L2
ENSG00000134744 TUT4 965059 sc-eQTL 4.74e-01 0.157 0.219 0.063 PB L2
ENSG00000157184 CPT2 321754 sc-eQTL 2.26e-01 -0.249 0.205 0.063 PB L2
ENSG00000157193 LRP8 190077 sc-eQTL 1.48e-01 -0.314 0.216 0.063 PB L2
ENSG00000157216 SSBP3 -894933 sc-eQTL 6.27e-01 -0.0974 0.2 0.063 PB L2
ENSG00000162377 COA7 820199 sc-eQTL 3.67e-01 0.191 0.211 0.063 PB L2
ENSG00000162378 ZYG11B 792093 sc-eQTL 6.89e-01 -0.0931 0.232 0.063 PB L2
ENSG00000162384 CZIB 297912 sc-eQTL 8.51e-01 0.0427 0.227 0.063 PB L2
ENSG00000162385 MAGOH 280028 sc-eQTL 7.47e-01 0.0679 0.21 0.063 PB L2
ENSG00000182183 SHISAL2A 885378 sc-eQTL 7.15e-01 -0.0704 0.193 0.063 PB L2
ENSG00000215883 CYB5RL -681490 sc-eQTL 4.34e-01 0.184 0.235 0.063 PB L2
ENSG00000230138 LINC02812 150301 sc-eQTL 7.62e-01 0.0514 0.169 0.063 PB L2
ENSG00000058799 YIPF1 -371252 sc-eQTL 6.95e-01 -0.0696 0.177 0.05 Pro_T L2
ENSG00000058804 NDC1 -319917 sc-eQTL 4.90e-01 -0.0969 0.14 0.05 Pro_T L2
ENSG00000081870 HSPB11 -427383 sc-eQTL 4.79e-01 0.0895 0.126 0.05 Pro_T L2
ENSG00000116157 GPX7 916175 sc-eQTL 1.61e-01 -0.233 0.165 0.05 Pro_T L2
ENSG00000116171 SCP2 591270 sc-eQTL 7.04e-01 -0.0645 0.17 0.05 Pro_T L2
ENSG00000116205 TCEANC2 -535038 sc-eQTL 6.51e-01 0.088 0.194 0.05 Pro_T L2
ENSG00000116209 TMEM59 -534958 sc-eQTL 5.08e-01 0.0893 0.135 0.05 Pro_T L2
ENSG00000116212 LRRC42 -427539 sc-eQTL 8.36e-01 0.036 0.173 0.05 Pro_T L2
ENSG00000116221 MRPL37 -665495 sc-eQTL 1.66e-01 -0.183 0.131 0.05 Pro_T L2
ENSG00000121310 ECHDC2 591334 sc-eQTL 1.77e-01 -0.25 0.185 0.05 Pro_T L2
ENSG00000134744 TUT4 965059 sc-eQTL 8.86e-01 0.0309 0.216 0.05 Pro_T L2
ENSG00000157184 CPT2 321754 sc-eQTL 9.13e-01 -0.02 0.182 0.05 Pro_T L2
ENSG00000157193 LRP8 190077 sc-eQTL 2.44e-01 -0.211 0.18 0.05 Pro_T L2
ENSG00000157216 SSBP3 -894933 sc-eQTL 5.93e-01 -0.0792 0.148 0.05 Pro_T L2
ENSG00000162377 COA7 820199 sc-eQTL 7.74e-01 -0.0497 0.173 0.05 Pro_T L2
ENSG00000162378 ZYG11B 792093 sc-eQTL 2.81e-01 0.228 0.211 0.05 Pro_T L2
ENSG00000162383 SLC1A7 375914 sc-eQTL 8.85e-01 -0.025 0.172 0.05 Pro_T L2
ENSG00000162384 CZIB 297912 sc-eQTL 7.00e-01 0.079 0.205 0.05 Pro_T L2
ENSG00000162385 MAGOH 280028 sc-eQTL 2.13e-01 0.206 0.165 0.05 Pro_T L2
ENSG00000182183 SHISAL2A 885378 sc-eQTL 9.26e-01 0.0182 0.197 0.05 Pro_T L2
ENSG00000215883 CYB5RL -681490 sc-eQTL 3.23e-01 0.176 0.178 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081870 HSPB11 -427383 eQTL 0.0301 -0.0886 0.0408 0.00142 0.0 0.0481
ENSG00000121310 ECHDC2 591334 eQTL 0.00274 -0.125 0.0415 0.0 0.0 0.0481
ENSG00000162384 CZIB 297912 eQTL 0.0129 -0.0838 0.0336 0.0 0.0 0.0481
ENSG00000226147 TUBBP10 523820 eQTL 0.0102 -0.239 0.0928 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121310 ECHDC2 591334 3.14e-07 1.78e-07 5.64e-08 2.45e-07 9.8e-08 8.37e-08 2.1e-07 5.75e-08 1.66e-07 6.75e-08 1.61e-07 1.08e-07 2.74e-07 8e-08 5.43e-08 7.89e-08 4.31e-08 1.56e-07 6.92e-08 5.46e-08 1.25e-07 1.42e-07 1.58e-07 2.83e-08 2.02e-07 1.25e-07 1.13e-07 1.1e-07 1.26e-07 1.05e-07 1.26e-07 3.68e-08 3.51e-08 9.58e-08 4.04e-08 2.69e-08 4.62e-08 8.72e-08 5.95e-08 5.13e-08 5e-08 1.68e-07 5.27e-08 1.53e-08 4.25e-08 1.71e-08 1.21e-07 1.89e-09 4.8e-08
ENSG00000226147 TUBBP10 523820 3.92e-07 2.89e-07 6.41e-08 2.79e-07 1.01e-07 1.03e-07 2.86e-07 5.78e-08 1.96e-07 1.03e-07 2.07e-07 1.23e-07 4.34e-07 8.66e-08 6.6e-08 9.48e-08 4.63e-08 2.04e-07 7.36e-08 6.73e-08 1.18e-07 1.89e-07 1.75e-07 3.59e-08 2.74e-07 1.26e-07 1.2e-07 1.44e-07 1.39e-07 1.33e-07 1.59e-07 4.29e-08 3.56e-08 9.98e-08 8.75e-08 3.05e-08 6.2e-08 8.2e-08 4.72e-08 6.79e-08 5.33e-08 2.74e-07 3.25e-08 5.93e-09 3.2e-08 6.83e-09 1.2e-07 2e-09 4.94e-08
ENSG00000226754 \N 279936 1.24e-06 1.36e-06 3.05e-07 1.32e-06 2.43e-07 5.09e-07 1.6e-06 3.27e-07 1.44e-06 4.03e-07 1.73e-06 5.49e-07 2.49e-06 3e-07 5.23e-07 8.27e-07 7.97e-07 5.99e-07 5.88e-07 7.04e-07 3.5e-07 1.38e-06 9.21e-07 5.4e-07 2.29e-06 2.8e-07 6.7e-07 7.14e-07 1.19e-06 1.23e-06 7.47e-07 1.54e-07 1.78e-07 6.83e-07 5.87e-07 3.47e-07 5.22e-07 1.37e-07 5.03e-07 1.67e-07 1.35e-07 1.61e-06 5.89e-08 1.99e-07 1.89e-07 1.11e-07 1.3e-07 8.88e-08 8.38e-08