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Genes within 1Mb (chr1:55780515:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 979192 sc-eQTL 9.77e-01 0.00446 0.152 0.079 B L1
ENSG00000116133 DHCR24 893320 sc-eQTL 2.98e-01 0.15 0.143 0.079 B L1
ENSG00000162402 USP24 565151 sc-eQTL 9.93e-01 -0.000728 0.0877 0.079 B L1
ENSG00000162407 PLPP3 -864786 sc-eQTL 8.56e-01 -0.0271 0.149 0.079 B L1
ENSG00000006555 TTC22 979192 sc-eQTL 8.67e-01 0.0198 0.119 0.079 CD4T L1
ENSG00000162402 USP24 565151 sc-eQTL 1.80e-01 -0.113 0.0841 0.079 CD4T L1
ENSG00000006555 TTC22 979192 sc-eQTL 9.50e-01 -0.00643 0.103 0.079 CD8T L1
ENSG00000162402 USP24 565151 sc-eQTL 7.24e-01 -0.0299 0.0848 0.079 CD8T L1
ENSG00000116133 DHCR24 893320 sc-eQTL 3.08e-02 0.289 0.133 0.081 DC L1
ENSG00000162402 USP24 565151 sc-eQTL 7.59e-01 -0.0253 0.0823 0.081 DC L1
ENSG00000116133 DHCR24 893320 sc-eQTL 1.10e-01 0.155 0.0967 0.079 Mono L1
ENSG00000162402 USP24 565151 sc-eQTL 4.41e-01 -0.0686 0.0889 0.079 Mono L1
ENSG00000006555 TTC22 979192 sc-eQTL 8.30e-01 0.0289 0.134 0.079 NK L1
ENSG00000116133 DHCR24 893320 sc-eQTL 8.25e-01 -0.0301 0.136 0.079 NK L1
ENSG00000162398 LEXM 974452 sc-eQTL 7.46e-01 0.041 0.127 0.079 NK L1
ENSG00000162402 USP24 565151 sc-eQTL 1.63e-01 -0.107 0.0765 0.079 NK L1
ENSG00000006555 TTC22 979192 sc-eQTL 1.14e-01 -0.188 0.119 0.079 Other_T L1
ENSG00000116133 DHCR24 893320 sc-eQTL 1.93e-01 0.12 0.0922 0.079 Other_T L1
ENSG00000162402 USP24 565151 sc-eQTL 7.18e-01 -0.0396 0.11 0.079 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 979192 sc-eQTL 6.38e-01 0.0576 0.122 0.084 B_Activated L2
ENSG00000116133 DHCR24 893320 sc-eQTL 2.66e-02 -0.317 0.142 0.084 B_Activated L2
ENSG00000162402 USP24 565151 sc-eQTL 7.99e-01 -0.0398 0.156 0.084 B_Activated L2
ENSG00000162407 PLPP3 -864786 sc-eQTL 4.12e-01 0.129 0.157 0.084 B_Activated L2
ENSG00000006555 TTC22 979192 sc-eQTL 5.97e-01 0.0857 0.162 0.079 B_Intermediate L2
ENSG00000116133 DHCR24 893320 sc-eQTL 7.51e-01 -0.0478 0.15 0.079 B_Intermediate L2
ENSG00000162402 USP24 565151 sc-eQTL 2.88e-01 -0.126 0.118 0.079 B_Intermediate L2
ENSG00000162407 PLPP3 -864786 sc-eQTL 5.92e-01 0.0814 0.152 0.079 B_Intermediate L2
ENSG00000006555 TTC22 979192 sc-eQTL 8.79e-01 0.0235 0.154 0.075 B_Memory L2
ENSG00000116133 DHCR24 893320 sc-eQTL 2.12e-01 0.191 0.153 0.075 B_Memory L2
ENSG00000162402 USP24 565151 sc-eQTL 7.32e-01 -0.0433 0.126 0.075 B_Memory L2
ENSG00000162407 PLPP3 -864786 sc-eQTL 6.44e-01 -0.0652 0.141 0.075 B_Memory L2
ENSG00000006555 TTC22 979192 sc-eQTL 7.37e-01 0.0538 0.16 0.079 B_Naive1 L2
ENSG00000116133 DHCR24 893320 sc-eQTL 1.88e-01 0.197 0.15 0.079 B_Naive1 L2
ENSG00000162402 USP24 565151 sc-eQTL 2.57e-01 0.122 0.107 0.079 B_Naive1 L2
ENSG00000162407 PLPP3 -864786 sc-eQTL 6.02e-01 0.0776 0.149 0.079 B_Naive1 L2
ENSG00000006555 TTC22 979192 sc-eQTL 5.80e-01 -0.0894 0.161 0.077 B_Naive2 L2
ENSG00000116133 DHCR24 893320 sc-eQTL 8.68e-01 0.0233 0.14 0.077 B_Naive2 L2
ENSG00000162402 USP24 565151 sc-eQTL 6.25e-01 -0.0577 0.118 0.077 B_Naive2 L2
ENSG00000162407 PLPP3 -864786 sc-eQTL 8.39e-01 -0.0282 0.138 0.077 B_Naive2 L2
ENSG00000006555 TTC22 979192 sc-eQTL 6.20e-01 -0.074 0.149 0.08 CD4_CTL L2
ENSG00000162402 USP24 565151 sc-eQTL 9.85e-01 -0.00268 0.145 0.08 CD4_CTL L2
ENSG00000006555 TTC22 979192 sc-eQTL 3.03e-01 0.142 0.138 0.079 CD4_Naive L2
ENSG00000162402 USP24 565151 sc-eQTL 7.94e-02 -0.159 0.09 0.079 CD4_Naive L2
ENSG00000006555 TTC22 979192 sc-eQTL 1.27e-01 -0.222 0.145 0.079 CD4_TCM L2
ENSG00000162402 USP24 565151 sc-eQTL 6.25e-01 0.0535 0.109 0.079 CD4_TCM L2
ENSG00000006555 TTC22 979192 sc-eQTL 8.39e-01 -0.034 0.167 0.079 CD4_TEM L2
ENSG00000162402 USP24 565151 sc-eQTL 5.36e-01 -0.0763 0.123 0.079 CD4_TEM L2
ENSG00000006555 TTC22 979192 sc-eQTL 3.05e-01 -0.137 0.134 0.079 CD8_CTL L2
ENSG00000162402 USP24 565151 sc-eQTL 8.19e-01 -0.0238 0.104 0.079 CD8_CTL L2
ENSG00000006555 TTC22 979192 sc-eQTL 3.47e-01 0.14 0.149 0.079 CD8_Naive L2
ENSG00000162402 USP24 565151 sc-eQTL 8.72e-01 0.0176 0.109 0.079 CD8_Naive L2
ENSG00000006555 TTC22 979192 sc-eQTL 3.34e-01 -0.157 0.162 0.079 CD8_TCM L2
ENSG00000162402 USP24 565151 sc-eQTL 6.31e-02 0.253 0.136 0.079 CD8_TCM L2
ENSG00000006555 TTC22 979192 sc-eQTL 7.90e-01 -0.0407 0.152 0.084 CD8_TEM L2
ENSG00000162402 USP24 565151 sc-eQTL 8.76e-01 -0.0242 0.155 0.084 CD8_TEM L2
ENSG00000006555 TTC22 979192 sc-eQTL 3.57e-01 -0.134 0.145 0.08 MAIT L2
ENSG00000116133 DHCR24 893320 sc-eQTL 8.07e-01 0.0263 0.107 0.08 MAIT L2
ENSG00000162402 USP24 565151 sc-eQTL 4.48e-01 0.0993 0.131 0.08 MAIT L2
ENSG00000006555 TTC22 979192 sc-eQTL 3.05e-01 0.165 0.161 0.082 NK_CD56bright L2
ENSG00000116133 DHCR24 893320 sc-eQTL 7.67e-01 0.0423 0.142 0.082 NK_CD56bright L2
ENSG00000162398 LEXM 974452 sc-eQTL 5.07e-01 -0.0968 0.146 0.082 NK_CD56bright L2
ENSG00000162402 USP24 565151 sc-eQTL 6.55e-01 -0.0562 0.126 0.082 NK_CD56bright L2
ENSG00000006555 TTC22 979192 sc-eQTL 8.74e-01 -0.0214 0.135 0.08 NK_CD56dim L2
ENSG00000116133 DHCR24 893320 sc-eQTL 7.50e-01 0.045 0.141 0.08 NK_CD56dim L2
ENSG00000162398 LEXM 974452 sc-eQTL 5.53e-01 0.0821 0.138 0.08 NK_CD56dim L2
ENSG00000162402 USP24 565151 sc-eQTL 1.61e-01 -0.123 0.0875 0.08 NK_CD56dim L2
ENSG00000006555 TTC22 979192 sc-eQTL 8.60e-01 -0.0278 0.158 0.082 NK_HLA L2
ENSG00000116133 DHCR24 893320 sc-eQTL 5.82e-01 0.0849 0.154 0.082 NK_HLA L2
ENSG00000162398 LEXM 974452 sc-eQTL 9.81e-01 0.00357 0.15 0.082 NK_HLA L2
ENSG00000162402 USP24 565151 sc-eQTL 5.78e-01 0.0612 0.11 0.082 NK_HLA L2
ENSG00000006555 TTC22 979192 sc-eQTL 8.02e-01 -0.036 0.143 0.08 NK_cytokine L2
ENSG00000116133 DHCR24 893320 sc-eQTL 1.02e-01 -0.237 0.144 0.08 NK_cytokine L2
ENSG00000162398 LEXM 974452 sc-eQTL 9.96e-01 -0.000722 0.151 0.08 NK_cytokine L2
ENSG00000162402 USP24 565151 sc-eQTL 1.20e-02 -0.257 0.102 0.08 NK_cytokine L2
ENSG00000006555 TTC22 979192 sc-eQTL 8.22e-01 0.0407 0.181 0.085 PB L2
ENSG00000116133 DHCR24 893320 sc-eQTL 1.67e-02 0.38 0.156 0.085 PB L2
ENSG00000162402 USP24 565151 sc-eQTL 4.98e-01 -0.132 0.194 0.085 PB L2
ENSG00000162407 PLPP3 -864786 sc-eQTL 2.81e-02 0.382 0.172 0.085 PB L2
ENSG00000006555 TTC22 979192 sc-eQTL 4.04e-01 0.123 0.147 0.076 Pro_T L2
ENSG00000116133 DHCR24 893320 sc-eQTL 9.75e-02 0.207 0.124 0.076 Pro_T L2
ENSG00000162402 USP24 565151 sc-eQTL 3.63e-01 -0.129 0.142 0.076 Pro_T L2
ENSG00000006555 TTC22 979192 sc-eQTL 2.93e-02 0.33 0.15 0.079 Treg L2
ENSG00000162402 USP24 565151 sc-eQTL 1.81e-01 0.181 0.135 0.079 Treg L2
ENSG00000116133 DHCR24 893320 sc-eQTL 3.90e-01 0.115 0.133 0.085 cDC L2
ENSG00000162402 USP24 565151 sc-eQTL 7.44e-01 0.0537 0.164 0.085 cDC L2
ENSG00000116133 DHCR24 893320 sc-eQTL 6.64e-02 0.173 0.0936 0.079 cMono_IL1B L2
ENSG00000162402 USP24 565151 sc-eQTL 8.95e-01 -0.014 0.107 0.079 cMono_IL1B L2
ENSG00000116133 DHCR24 893320 sc-eQTL 9.64e-01 -0.00399 0.0879 0.079 cMono_S100A L2
ENSG00000162402 USP24 565151 sc-eQTL 2.64e-01 0.145 0.13 0.079 cMono_S100A L2
ENSG00000006555 TTC22 979192 sc-eQTL 4.78e-01 -0.108 0.151 0.079 gdT L2
ENSG00000116133 DHCR24 893320 sc-eQTL 9.55e-01 -0.0096 0.169 0.079 gdT L2
ENSG00000162402 USP24 565151 sc-eQTL 2.85e-01 -0.173 0.162 0.079 gdT L2
ENSG00000116133 DHCR24 893320 sc-eQTL 4.72e-02 0.23 0.115 0.082 intMono L2
ENSG00000162402 USP24 565151 sc-eQTL 7.23e-01 0.0527 0.148 0.082 intMono L2
ENSG00000116133 DHCR24 893320 sc-eQTL 3.99e-01 0.0976 0.116 0.081 ncMono L2
ENSG00000162402 USP24 565151 sc-eQTL 2.82e-01 -0.14 0.13 0.081 ncMono L2
ENSG00000116133 DHCR24 893320 sc-eQTL 4.87e-01 0.0941 0.135 0.085 pDC L2
ENSG00000162402 USP24 565151 sc-eQTL 3.38e-01 -0.104 0.108 0.085 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 979192 sc-eQTL 7.66e-01 0.0457 0.153 0.079 B_Memory LOneK1K
ENSG00000116133 DHCR24 893320 sc-eQTL 6.55e-01 -0.0687 0.154 0.079 B_Memory LOneK1K
ENSG00000162402 USP24 565151 sc-eQTL 1.72e-01 -0.15 0.109 0.079 B_Memory LOneK1K
ENSG00000162407 PLPP3 -864786 sc-eQTL 5.66e-01 0.0786 0.137 0.079 B_Memory LOneK1K
ENSG00000006555 TTC22 979192 sc-eQTL 7.28e-01 -0.0565 0.162 0.079 B_Naive LOneK1K
ENSG00000116133 DHCR24 893320 sc-eQTL 7.86e-01 0.0397 0.146 0.079 B_Naive LOneK1K
ENSG00000162402 USP24 565151 sc-eQTL 5.50e-01 0.0621 0.104 0.079 B_Naive LOneK1K
ENSG00000162407 PLPP3 -864786 sc-eQTL 8.71e-01 0.0262 0.162 0.079 B_Naive LOneK1K
ENSG00000116133 DHCR24 893320 sc-eQTL 3.16e-01 0.0915 0.0911 0.079 CD14_Mono LOneK1K
ENSG00000162402 USP24 565151 sc-eQTL 8.72e-01 0.0161 0.0998 0.079 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 893320 sc-eQTL 5.79e-02 0.21 0.11 0.08 CD16_Mono LOneK1K
ENSG00000162402 USP24 565151 sc-eQTL 3.85e-01 -0.108 0.125 0.08 CD16_Mono LOneK1K
ENSG00000006555 TTC22 979192 sc-eQTL 8.18e-01 -0.0303 0.132 0.08 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 893320 sc-eQTL 6.85e-01 -0.0559 0.138 0.08 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 974452 sc-eQTL 5.83e-01 0.071 0.129 0.08 NK_CD56dim LOneK1K
ENSG00000162402 USP24 565151 sc-eQTL 7.06e-02 -0.148 0.0814 0.08 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162398 LEXM 974452 eQTL 0.0225 -0.0751 0.0328 0.0 0.0 0.0957
ENSG00000234810 AL603840.1 451227 eQTL 0.000389 -0.175 0.0491 0.0 0.0 0.0957

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N 893320 2.67e-07 1.3e-07 4.91e-08 1.84e-07 9.25e-08 9.76e-08 1.53e-07 5.43e-08 1.45e-07 5.42e-08 1.54e-07 9.19e-08 1.47e-07 6.76e-08 6.04e-08 7.36e-08 4.17e-08 1.27e-07 5.75e-08 4.23e-08 1.19e-07 1.27e-07 1.44e-07 2.93e-08 1.46e-07 1.14e-07 1.07e-07 9.65e-08 1.16e-07 1.05e-07 9.92e-08 3.68e-08 3.89e-08 8.34e-08 7.66e-08 3.49e-08 5.08e-08 9.3e-08 6.55e-08 3.71e-08 5.42e-08 1.36e-07 5.2e-08 1.76e-08 4.25e-08 1.83e-08 1.22e-07 3.8e-09 5.04e-08
ENSG00000162398 LEXM 974452 2.74e-07 1.19e-07 4.47e-08 1.82e-07 9.16e-08 1e-07 1.49e-07 5.37e-08 1.44e-07 4.94e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.87e-08 1.26e-07 5.82e-08 4.04e-08 1.08e-07 1.27e-07 1.39e-07 3.49e-08 1.37e-07 1.14e-07 1.06e-07 9.36e-08 1.09e-07 1.03e-07 9.7e-08 3.64e-08 3.56e-08 8.55e-08 8.74e-08 3.6e-08 5.01e-08 9.22e-08 6.55e-08 3.77e-08 4.36e-08 1.33e-07 5.27e-08 2.48e-08 4.92e-08 1.83e-08 1.19e-07 3.86e-09 4.94e-08
ENSG00000169174 \N 740967 3.02e-07 1.36e-07 5.82e-08 1.89e-07 9.8e-08 8.33e-08 1.81e-07 5.85e-08 1.5e-07 6.75e-08 1.67e-07 1.19e-07 1.79e-07 7.64e-08 5.82e-08 7.97e-08 4.31e-08 1.56e-07 7.12e-08 4.95e-08 1.25e-07 1.31e-07 1.58e-07 3.07e-08 1.72e-07 1.23e-07 1.12e-07 1.01e-07 1.26e-07 1.05e-07 1.06e-07 3.93e-08 3.68e-08 8.7e-08 3.63e-08 3.22e-08 5.61e-08 8.76e-08 6.67e-08 3.75e-08 5.28e-08 1.46e-07 5.22e-08 1.49e-08 3.07e-08 1.77e-08 1.11e-07 1.9e-09 4.81e-08
ENSG00000234810 AL603840.1 451227 8.25e-07 4.63e-07 1.05e-07 3.56e-07 9.82e-08 1.74e-07 5.13e-07 1.09e-07 3.62e-07 2.14e-07 4.97e-07 3.48e-07 6.47e-07 1.1e-07 1.68e-07 2e-07 2.34e-07 3.67e-07 1.89e-07 1.3e-07 1.89e-07 3.13e-07 3.08e-07 1.36e-07 6.39e-07 2.4e-07 2.24e-07 1.97e-07 3.27e-07 5.82e-07 2.54e-07 7.79e-08 5.6e-08 1.23e-07 2.61e-07 7.86e-08 9.9e-08 7.75e-08 3.82e-08 5.54e-08 7.96e-08 4.16e-07 2.8e-08 2.1e-08 1.27e-07 1.75e-08 7.25e-08 3.2e-09 5.56e-08