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Genes within 1Mb (chr1:55740371:GT:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 939048 sc-eQTL 3.27e-01 0.121 0.124 0.87 B L1
ENSG00000116133 DHCR24 853176 sc-eQTL 9.75e-01 -0.00373 0.117 0.87 B L1
ENSG00000162402 USP24 525007 sc-eQTL 9.68e-01 -0.00287 0.0715 0.87 B L1
ENSG00000162407 PLPP3 -904930 sc-eQTL 5.66e-01 0.0698 0.121 0.87 B L1
ENSG00000006555 TTC22 939048 sc-eQTL 8.44e-01 0.0187 0.0951 0.87 CD4T L1
ENSG00000162402 USP24 525007 sc-eQTL 2.26e-01 0.082 0.0675 0.87 CD4T L1
ENSG00000006555 TTC22 939048 sc-eQTL 7.31e-01 0.0284 0.0827 0.87 CD8T L1
ENSG00000162402 USP24 525007 sc-eQTL 4.31e-01 0.054 0.0684 0.87 CD8T L1
ENSG00000116133 DHCR24 853176 sc-eQTL 7.30e-01 -0.0392 0.113 0.872 DC L1
ENSG00000162402 USP24 525007 sc-eQTL 5.37e-01 0.0429 0.0694 0.872 DC L1
ENSG00000116133 DHCR24 853176 sc-eQTL 7.01e-01 -0.0305 0.0794 0.87 Mono L1
ENSG00000162402 USP24 525007 sc-eQTL 9.82e-01 0.00162 0.0727 0.87 Mono L1
ENSG00000006555 TTC22 939048 sc-eQTL 8.47e-01 -0.0214 0.11 0.869 NK L1
ENSG00000116133 DHCR24 853176 sc-eQTL 4.97e-01 -0.0757 0.111 0.869 NK L1
ENSG00000162398 LEXM 934308 sc-eQTL 9.25e-01 -0.00976 0.104 0.869 NK L1
ENSG00000162402 USP24 525007 sc-eQTL 2.40e-01 0.0741 0.0629 0.869 NK L1
ENSG00000006555 TTC22 939048 sc-eQTL 5.63e-01 0.0561 0.0969 0.87 Other_T L1
ENSG00000116133 DHCR24 853176 sc-eQTL 2.83e-01 -0.0807 0.075 0.87 Other_T L1
ENSG00000162402 USP24 525007 sc-eQTL 3.42e-01 0.0846 0.0889 0.87 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 939048 sc-eQTL 5.57e-01 -0.0592 0.101 0.865 B_Activated L2
ENSG00000116133 DHCR24 853176 sc-eQTL 6.30e-02 0.219 0.117 0.865 B_Activated L2
ENSG00000162402 USP24 525007 sc-eQTL 4.91e-01 0.0888 0.129 0.865 B_Activated L2
ENSG00000162407 PLPP3 -904930 sc-eQTL 2.74e-01 -0.142 0.129 0.865 B_Activated L2
ENSG00000006555 TTC22 939048 sc-eQTL 8.19e-01 -0.0305 0.133 0.869 B_Intermediate L2
ENSG00000116133 DHCR24 853176 sc-eQTL 9.76e-01 0.00367 0.124 0.869 B_Intermediate L2
ENSG00000162402 USP24 525007 sc-eQTL 1.80e-01 0.131 0.0971 0.869 B_Intermediate L2
ENSG00000162407 PLPP3 -904930 sc-eQTL 4.07e-01 -0.103 0.124 0.869 B_Intermediate L2
ENSG00000006555 TTC22 939048 sc-eQTL 4.71e-01 0.0927 0.128 0.875 B_Memory L2
ENSG00000116133 DHCR24 853176 sc-eQTL 6.67e-01 -0.0549 0.128 0.875 B_Memory L2
ENSG00000162402 USP24 525007 sc-eQTL 5.41e-01 0.0643 0.105 0.875 B_Memory L2
ENSG00000162407 PLPP3 -904930 sc-eQTL 2.89e-01 0.124 0.117 0.875 B_Memory L2
ENSG00000006555 TTC22 939048 sc-eQTL 8.43e-01 0.0262 0.132 0.87 B_Naive1 L2
ENSG00000116133 DHCR24 853176 sc-eQTL 1.84e-01 -0.165 0.123 0.87 B_Naive1 L2
ENSG00000162402 USP24 525007 sc-eQTL 3.83e-01 -0.0776 0.0887 0.87 B_Naive1 L2
ENSG00000162407 PLPP3 -904930 sc-eQTL 8.30e-01 0.0265 0.123 0.87 B_Naive1 L2
ENSG00000006555 TTC22 939048 sc-eQTL 1.53e-01 0.189 0.132 0.873 B_Naive2 L2
ENSG00000116133 DHCR24 853176 sc-eQTL 8.56e-01 -0.021 0.115 0.873 B_Naive2 L2
ENSG00000162402 USP24 525007 sc-eQTL 7.05e-01 0.0368 0.0969 0.873 B_Naive2 L2
ENSG00000162407 PLPP3 -904930 sc-eQTL 9.29e-01 0.0102 0.114 0.873 B_Naive2 L2
ENSG00000006555 TTC22 939048 sc-eQTL 2.07e-01 0.153 0.121 0.866 CD4_CTL L2
ENSG00000162402 USP24 525007 sc-eQTL 9.71e-01 0.0043 0.118 0.866 CD4_CTL L2
ENSG00000006555 TTC22 939048 sc-eQTL 3.41e-01 -0.106 0.111 0.87 CD4_Naive L2
ENSG00000162402 USP24 525007 sc-eQTL 4.67e-02 0.145 0.0727 0.87 CD4_Naive L2
ENSG00000006555 TTC22 939048 sc-eQTL 1.71e-01 0.161 0.117 0.87 CD4_TCM L2
ENSG00000162402 USP24 525007 sc-eQTL 3.08e-01 -0.09 0.0882 0.87 CD4_TCM L2
ENSG00000006555 TTC22 939048 sc-eQTL 5.58e-01 -0.0796 0.136 0.87 CD4_TEM L2
ENSG00000162402 USP24 525007 sc-eQTL 5.31e-01 0.0629 0.1 0.87 CD4_TEM L2
ENSG00000006555 TTC22 939048 sc-eQTL 1.60e-01 0.153 0.108 0.87 CD8_CTL L2
ENSG00000162402 USP24 525007 sc-eQTL 6.53e-01 0.0381 0.0845 0.87 CD8_CTL L2
ENSG00000006555 TTC22 939048 sc-eQTL 9.96e-01 0.00056 0.122 0.87 CD8_Naive L2
ENSG00000162402 USP24 525007 sc-eQTL 5.43e-01 0.0543 0.0892 0.87 CD8_Naive L2
ENSG00000006555 TTC22 939048 sc-eQTL 5.34e-01 0.0849 0.136 0.873 CD8_TCM L2
ENSG00000162402 USP24 525007 sc-eQTL 1.25e-01 -0.176 0.114 0.873 CD8_TCM L2
ENSG00000006555 TTC22 939048 sc-eQTL 5.37e-01 -0.0768 0.124 0.863 CD8_TEM L2
ENSG00000162402 USP24 525007 sc-eQTL 6.97e-01 0.0494 0.127 0.863 CD8_TEM L2
ENSG00000006555 TTC22 939048 sc-eQTL 8.59e-01 0.0207 0.117 0.868 MAIT L2
ENSG00000116133 DHCR24 853176 sc-eQTL 8.38e-01 -0.0177 0.0864 0.868 MAIT L2
ENSG00000162402 USP24 525007 sc-eQTL 8.25e-01 0.0233 0.105 0.868 MAIT L2
ENSG00000006555 TTC22 939048 sc-eQTL 3.20e-01 -0.129 0.13 0.864 NK_CD56bright L2
ENSG00000116133 DHCR24 853176 sc-eQTL 3.97e-01 -0.0974 0.115 0.864 NK_CD56bright L2
ENSG00000162398 LEXM 934308 sc-eQTL 6.77e-01 0.0491 0.118 0.864 NK_CD56bright L2
ENSG00000162402 USP24 525007 sc-eQTL 5.73e-01 0.0571 0.101 0.864 NK_CD56bright L2
ENSG00000006555 TTC22 939048 sc-eQTL 6.04e-01 0.0571 0.11 0.869 NK_CD56dim L2
ENSG00000116133 DHCR24 853176 sc-eQTL 4.33e-01 -0.09 0.115 0.869 NK_CD56dim L2
ENSG00000162398 LEXM 934308 sc-eQTL 8.54e-01 -0.0207 0.113 0.869 NK_CD56dim L2
ENSG00000162402 USP24 525007 sc-eQTL 4.17e-01 0.0582 0.0716 0.869 NK_CD56dim L2
ENSG00000006555 TTC22 939048 sc-eQTL 6.23e-01 0.0639 0.13 0.861 NK_HLA L2
ENSG00000116133 DHCR24 853176 sc-eQTL 6.87e-01 -0.051 0.127 0.861 NK_HLA L2
ENSG00000162398 LEXM 934308 sc-eQTL 1.75e-01 -0.167 0.123 0.861 NK_HLA L2
ENSG00000162402 USP24 525007 sc-eQTL 8.90e-01 -0.0125 0.0904 0.861 NK_HLA L2
ENSG00000006555 TTC22 939048 sc-eQTL 7.69e-01 0.0348 0.118 0.869 NK_cytokine L2
ENSG00000116133 DHCR24 853176 sc-eQTL 9.34e-01 0.00998 0.119 0.869 NK_cytokine L2
ENSG00000162398 LEXM 934308 sc-eQTL 8.34e-01 -0.0261 0.124 0.869 NK_cytokine L2
ENSG00000162402 USP24 525007 sc-eQTL 4.32e-02 0.171 0.084 0.869 NK_cytokine L2
ENSG00000006555 TTC22 939048 sc-eQTL 9.28e-01 -0.0139 0.154 0.878 PB L2
ENSG00000116133 DHCR24 853176 sc-eQTL 8.59e-02 -0.234 0.135 0.878 PB L2
ENSG00000162402 USP24 525007 sc-eQTL 4.62e-01 -0.122 0.166 0.878 PB L2
ENSG00000162407 PLPP3 -904930 sc-eQTL 9.58e-02 -0.248 0.148 0.878 PB L2
ENSG00000006555 TTC22 939048 sc-eQTL 3.87e-01 -0.103 0.119 0.872 Pro_T L2
ENSG00000116133 DHCR24 853176 sc-eQTL 3.41e-02 -0.213 0.1 0.872 Pro_T L2
ENSG00000162402 USP24 525007 sc-eQTL 1.88e-01 0.151 0.114 0.872 Pro_T L2
ENSG00000006555 TTC22 939048 sc-eQTL 5.00e-03 -0.343 0.121 0.87 Treg L2
ENSG00000162402 USP24 525007 sc-eQTL 2.47e-01 -0.127 0.109 0.87 Treg L2
ENSG00000116133 DHCR24 853176 sc-eQTL 7.40e-01 0.037 0.111 0.866 cDC L2
ENSG00000162402 USP24 525007 sc-eQTL 4.08e-01 -0.114 0.137 0.866 cDC L2
ENSG00000116133 DHCR24 853176 sc-eQTL 2.15e-01 -0.0963 0.0775 0.87 cMono_IL1B L2
ENSG00000162402 USP24 525007 sc-eQTL 9.79e-01 -0.00235 0.088 0.87 cMono_IL1B L2
ENSG00000116133 DHCR24 853176 sc-eQTL 8.70e-01 0.0118 0.0724 0.87 cMono_S100A L2
ENSG00000162402 USP24 525007 sc-eQTL 9.49e-01 -0.00685 0.107 0.87 cMono_S100A L2
ENSG00000006555 TTC22 939048 sc-eQTL 2.33e-01 0.145 0.121 0.87 gdT L2
ENSG00000116133 DHCR24 853176 sc-eQTL 5.89e-01 -0.0735 0.136 0.87 gdT L2
ENSG00000162402 USP24 525007 sc-eQTL 4.24e-01 0.104 0.13 0.87 gdT L2
ENSG00000116133 DHCR24 853176 sc-eQTL 1.92e-01 -0.127 0.0974 0.873 intMono L2
ENSG00000162402 USP24 525007 sc-eQTL 9.97e-01 -0.00041 0.125 0.873 intMono L2
ENSG00000116133 DHCR24 853176 sc-eQTL 1.37e-01 -0.142 0.095 0.871 ncMono L2
ENSG00000162402 USP24 525007 sc-eQTL 8.95e-01 0.0143 0.108 0.871 ncMono L2
ENSG00000116133 DHCR24 853176 sc-eQTL 8.50e-01 0.0219 0.116 0.867 pDC L2
ENSG00000162402 USP24 525007 sc-eQTL 2.14e-01 0.115 0.0923 0.867 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 939048 sc-eQTL 4.84e-01 0.0867 0.124 0.87 B_Memory LOneK1K
ENSG00000116133 DHCR24 853176 sc-eQTL 2.03e-01 0.158 0.124 0.87 B_Memory LOneK1K
ENSG00000162402 USP24 525007 sc-eQTL 7.33e-02 0.159 0.0881 0.87 B_Memory LOneK1K
ENSG00000162407 PLPP3 -904930 sc-eQTL 6.45e-01 -0.051 0.111 0.87 B_Memory LOneK1K
ENSG00000006555 TTC22 939048 sc-eQTL 1.43e-01 0.196 0.133 0.87 B_Naive LOneK1K
ENSG00000116133 DHCR24 853176 sc-eQTL 7.38e-01 -0.0404 0.121 0.87 B_Naive LOneK1K
ENSG00000162402 USP24 525007 sc-eQTL 6.00e-01 -0.0448 0.0854 0.87 B_Naive LOneK1K
ENSG00000162407 PLPP3 -904930 sc-eQTL 8.64e-01 0.0228 0.133 0.87 B_Naive LOneK1K
ENSG00000116133 DHCR24 853176 sc-eQTL 6.79e-01 -0.0309 0.0745 0.87 CD14_Mono LOneK1K
ENSG00000162402 USP24 525007 sc-eQTL 9.28e-01 -0.0074 0.0815 0.87 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 853176 sc-eQTL 1.05e-01 -0.149 0.0918 0.869 CD16_Mono LOneK1K
ENSG00000162402 USP24 525007 sc-eQTL 9.39e-01 0.00799 0.104 0.869 CD16_Mono LOneK1K
ENSG00000006555 TTC22 939048 sc-eQTL 9.47e-01 0.00715 0.108 0.869 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 853176 sc-eQTL 5.91e-01 -0.0607 0.113 0.869 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 934308 sc-eQTL 8.88e-01 -0.0149 0.106 0.869 NK_CD56dim LOneK1K
ENSG00000162402 USP24 525007 sc-eQTL 1.80e-01 0.0901 0.067 0.869 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162398 LEXM 934308 eQTL 0.00724 0.0764 0.0284 0.0 0.0 0.145
ENSG00000234810 AL603840.1 411083 eQTL 1.13e-06 0.207 0.0423 0.0 0.0 0.145

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162398 LEXM 934308 6.33e-07 4.24e-07 5.35e-08 2.22e-07 9.25e-08 8.37e-08 3.7e-07 5.21e-08 1.5e-07 4.4e-08 2.68e-07 1.23e-07 2.13e-07 8.07e-08 6.12e-08 7.97e-08 3.94e-08 2.33e-07 5.82e-08 3.59e-08 1.19e-07 1.7e-07 2e-07 4.82e-08 1.85e-07 1.14e-07 1.07e-07 9.61e-08 1.32e-07 9.49e-08 1.26e-07 3.19e-08 2.75e-08 8.65e-08 4.84e-08 3.93e-08 4.85e-08 8.91e-08 8.22e-08 3.05e-08 3.35e-08 7.2e-07 4.12e-08 3.06e-08 1.01e-07 1.69e-08 1.23e-07 4.82e-09 4.72e-08
ENSG00000169174 \N 700823 1.22e-06 8.81e-07 8.99e-08 3.58e-07 1.06e-07 1.97e-07 7e-07 5.19e-08 2.53e-07 7.6e-08 1.02e-06 3.3e-07 5.54e-07 1.07e-07 9.2e-08 1.33e-07 4.31e-08 4.16e-07 7.42e-08 4.21e-08 1.27e-07 3.65e-07 4.08e-07 3.79e-08 5.15e-07 1.31e-07 1.31e-07 1.36e-07 3.58e-07 2.26e-07 2.6e-07 3.59e-08 2.74e-08 9.76e-08 9.25e-08 3.6e-08 4.79e-08 9.68e-08 7.92e-08 3.76e-08 4.18e-08 1.64e-06 5.22e-08 7.35e-09 8.03e-08 1.8e-08 1.15e-07 4.6e-09 4.61e-08
ENSG00000234810 AL603840.1 411083 3.58e-06 1.84e-06 3.08e-07 1.29e-06 3.6e-07 7.16e-07 1.33e-06 7.98e-08 1.2e-06 2.85e-07 2.01e-06 8.26e-07 2.1e-06 2.76e-07 5.58e-07 7.17e-07 5.64e-07 1.34e-06 5.54e-07 7.84e-08 3.24e-07 1.95e-06 1.68e-06 1.61e-07 2.49e-06 2.89e-07 5.82e-07 4.92e-07 1.72e-06 1.24e-06 7.05e-07 3.92e-08 3.56e-08 2.74e-07 4.07e-07 1.19e-07 1.01e-07 1.23e-07 5.8e-08 2.71e-08 5.04e-08 5.71e-06 6.65e-08 1.57e-07 3.87e-08 9.85e-08 1.67e-07 1.88e-09 5.02e-08