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Genes within 1Mb (chr1:55739175:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 937852 sc-eQTL 3.27e-01 0.121 0.124 0.87 B L1
ENSG00000116133 DHCR24 851980 sc-eQTL 9.75e-01 -0.00373 0.117 0.87 B L1
ENSG00000162402 USP24 523811 sc-eQTL 9.68e-01 -0.00287 0.0715 0.87 B L1
ENSG00000162407 PLPP3 -906126 sc-eQTL 5.66e-01 0.0698 0.121 0.87 B L1
ENSG00000006555 TTC22 937852 sc-eQTL 8.44e-01 0.0187 0.0951 0.87 CD4T L1
ENSG00000162402 USP24 523811 sc-eQTL 2.26e-01 0.082 0.0675 0.87 CD4T L1
ENSG00000006555 TTC22 937852 sc-eQTL 7.31e-01 0.0284 0.0827 0.87 CD8T L1
ENSG00000162402 USP24 523811 sc-eQTL 4.31e-01 0.054 0.0684 0.87 CD8T L1
ENSG00000116133 DHCR24 851980 sc-eQTL 7.30e-01 -0.0392 0.113 0.872 DC L1
ENSG00000162402 USP24 523811 sc-eQTL 5.37e-01 0.0429 0.0694 0.872 DC L1
ENSG00000116133 DHCR24 851980 sc-eQTL 7.01e-01 -0.0305 0.0794 0.87 Mono L1
ENSG00000162402 USP24 523811 sc-eQTL 9.82e-01 0.00162 0.0727 0.87 Mono L1
ENSG00000006555 TTC22 937852 sc-eQTL 8.47e-01 -0.0214 0.11 0.869 NK L1
ENSG00000116133 DHCR24 851980 sc-eQTL 4.97e-01 -0.0757 0.111 0.869 NK L1
ENSG00000162398 LEXM 933112 sc-eQTL 9.25e-01 -0.00976 0.104 0.869 NK L1
ENSG00000162402 USP24 523811 sc-eQTL 2.40e-01 0.0741 0.0629 0.869 NK L1
ENSG00000006555 TTC22 937852 sc-eQTL 5.63e-01 0.0561 0.0969 0.87 Other_T L1
ENSG00000116133 DHCR24 851980 sc-eQTL 2.83e-01 -0.0807 0.075 0.87 Other_T L1
ENSG00000162402 USP24 523811 sc-eQTL 3.42e-01 0.0846 0.0889 0.87 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 937852 sc-eQTL 5.57e-01 -0.0592 0.101 0.865 B_Activated L2
ENSG00000116133 DHCR24 851980 sc-eQTL 6.30e-02 0.219 0.117 0.865 B_Activated L2
ENSG00000162402 USP24 523811 sc-eQTL 4.91e-01 0.0888 0.129 0.865 B_Activated L2
ENSG00000162407 PLPP3 -906126 sc-eQTL 2.74e-01 -0.142 0.129 0.865 B_Activated L2
ENSG00000006555 TTC22 937852 sc-eQTL 8.19e-01 -0.0305 0.133 0.869 B_Intermediate L2
ENSG00000116133 DHCR24 851980 sc-eQTL 9.76e-01 0.00367 0.124 0.869 B_Intermediate L2
ENSG00000162402 USP24 523811 sc-eQTL 1.80e-01 0.131 0.0971 0.869 B_Intermediate L2
ENSG00000162407 PLPP3 -906126 sc-eQTL 4.07e-01 -0.103 0.124 0.869 B_Intermediate L2
ENSG00000006555 TTC22 937852 sc-eQTL 4.71e-01 0.0927 0.128 0.875 B_Memory L2
ENSG00000116133 DHCR24 851980 sc-eQTL 6.67e-01 -0.0549 0.128 0.875 B_Memory L2
ENSG00000162402 USP24 523811 sc-eQTL 5.41e-01 0.0643 0.105 0.875 B_Memory L2
ENSG00000162407 PLPP3 -906126 sc-eQTL 2.89e-01 0.124 0.117 0.875 B_Memory L2
ENSG00000006555 TTC22 937852 sc-eQTL 8.43e-01 0.0262 0.132 0.87 B_Naive1 L2
ENSG00000116133 DHCR24 851980 sc-eQTL 1.84e-01 -0.165 0.123 0.87 B_Naive1 L2
ENSG00000162402 USP24 523811 sc-eQTL 3.83e-01 -0.0776 0.0887 0.87 B_Naive1 L2
ENSG00000162407 PLPP3 -906126 sc-eQTL 8.30e-01 0.0265 0.123 0.87 B_Naive1 L2
ENSG00000006555 TTC22 937852 sc-eQTL 1.53e-01 0.189 0.132 0.873 B_Naive2 L2
ENSG00000116133 DHCR24 851980 sc-eQTL 8.56e-01 -0.021 0.115 0.873 B_Naive2 L2
ENSG00000162402 USP24 523811 sc-eQTL 7.05e-01 0.0368 0.0969 0.873 B_Naive2 L2
ENSG00000162407 PLPP3 -906126 sc-eQTL 9.29e-01 0.0102 0.114 0.873 B_Naive2 L2
ENSG00000006555 TTC22 937852 sc-eQTL 2.07e-01 0.153 0.121 0.866 CD4_CTL L2
ENSG00000162402 USP24 523811 sc-eQTL 9.71e-01 0.0043 0.118 0.866 CD4_CTL L2
ENSG00000006555 TTC22 937852 sc-eQTL 3.41e-01 -0.106 0.111 0.87 CD4_Naive L2
ENSG00000162402 USP24 523811 sc-eQTL 4.67e-02 0.145 0.0727 0.87 CD4_Naive L2
ENSG00000006555 TTC22 937852 sc-eQTL 1.71e-01 0.161 0.117 0.87 CD4_TCM L2
ENSG00000162402 USP24 523811 sc-eQTL 3.08e-01 -0.09 0.0882 0.87 CD4_TCM L2
ENSG00000006555 TTC22 937852 sc-eQTL 5.58e-01 -0.0796 0.136 0.87 CD4_TEM L2
ENSG00000162402 USP24 523811 sc-eQTL 5.31e-01 0.0629 0.1 0.87 CD4_TEM L2
ENSG00000006555 TTC22 937852 sc-eQTL 1.60e-01 0.153 0.108 0.87 CD8_CTL L2
ENSG00000162402 USP24 523811 sc-eQTL 6.53e-01 0.0381 0.0845 0.87 CD8_CTL L2
ENSG00000006555 TTC22 937852 sc-eQTL 9.96e-01 0.00056 0.122 0.87 CD8_Naive L2
ENSG00000162402 USP24 523811 sc-eQTL 5.43e-01 0.0543 0.0892 0.87 CD8_Naive L2
ENSG00000006555 TTC22 937852 sc-eQTL 5.34e-01 0.0849 0.136 0.873 CD8_TCM L2
ENSG00000162402 USP24 523811 sc-eQTL 1.25e-01 -0.176 0.114 0.873 CD8_TCM L2
ENSG00000006555 TTC22 937852 sc-eQTL 5.37e-01 -0.0768 0.124 0.863 CD8_TEM L2
ENSG00000162402 USP24 523811 sc-eQTL 6.97e-01 0.0494 0.127 0.863 CD8_TEM L2
ENSG00000006555 TTC22 937852 sc-eQTL 8.59e-01 0.0207 0.117 0.868 MAIT L2
ENSG00000116133 DHCR24 851980 sc-eQTL 8.38e-01 -0.0177 0.0864 0.868 MAIT L2
ENSG00000162402 USP24 523811 sc-eQTL 8.25e-01 0.0233 0.105 0.868 MAIT L2
ENSG00000006555 TTC22 937852 sc-eQTL 3.20e-01 -0.129 0.13 0.864 NK_CD56bright L2
ENSG00000116133 DHCR24 851980 sc-eQTL 3.97e-01 -0.0974 0.115 0.864 NK_CD56bright L2
ENSG00000162398 LEXM 933112 sc-eQTL 6.77e-01 0.0491 0.118 0.864 NK_CD56bright L2
ENSG00000162402 USP24 523811 sc-eQTL 5.73e-01 0.0571 0.101 0.864 NK_CD56bright L2
ENSG00000006555 TTC22 937852 sc-eQTL 6.04e-01 0.0571 0.11 0.869 NK_CD56dim L2
ENSG00000116133 DHCR24 851980 sc-eQTL 4.33e-01 -0.09 0.115 0.869 NK_CD56dim L2
ENSG00000162398 LEXM 933112 sc-eQTL 8.54e-01 -0.0207 0.113 0.869 NK_CD56dim L2
ENSG00000162402 USP24 523811 sc-eQTL 4.17e-01 0.0582 0.0716 0.869 NK_CD56dim L2
ENSG00000006555 TTC22 937852 sc-eQTL 6.23e-01 0.0639 0.13 0.861 NK_HLA L2
ENSG00000116133 DHCR24 851980 sc-eQTL 6.87e-01 -0.051 0.127 0.861 NK_HLA L2
ENSG00000162398 LEXM 933112 sc-eQTL 1.75e-01 -0.167 0.123 0.861 NK_HLA L2
ENSG00000162402 USP24 523811 sc-eQTL 8.90e-01 -0.0125 0.0904 0.861 NK_HLA L2
ENSG00000006555 TTC22 937852 sc-eQTL 7.69e-01 0.0348 0.118 0.869 NK_cytokine L2
ENSG00000116133 DHCR24 851980 sc-eQTL 9.34e-01 0.00998 0.119 0.869 NK_cytokine L2
ENSG00000162398 LEXM 933112 sc-eQTL 8.34e-01 -0.0261 0.124 0.869 NK_cytokine L2
ENSG00000162402 USP24 523811 sc-eQTL 4.32e-02 0.171 0.084 0.869 NK_cytokine L2
ENSG00000006555 TTC22 937852 sc-eQTL 9.28e-01 -0.0139 0.154 0.878 PB L2
ENSG00000116133 DHCR24 851980 sc-eQTL 8.59e-02 -0.234 0.135 0.878 PB L2
ENSG00000162402 USP24 523811 sc-eQTL 4.62e-01 -0.122 0.166 0.878 PB L2
ENSG00000162407 PLPP3 -906126 sc-eQTL 9.58e-02 -0.248 0.148 0.878 PB L2
ENSG00000006555 TTC22 937852 sc-eQTL 3.87e-01 -0.103 0.119 0.872 Pro_T L2
ENSG00000116133 DHCR24 851980 sc-eQTL 3.41e-02 -0.213 0.1 0.872 Pro_T L2
ENSG00000162402 USP24 523811 sc-eQTL 1.88e-01 0.151 0.114 0.872 Pro_T L2
ENSG00000006555 TTC22 937852 sc-eQTL 5.00e-03 -0.343 0.121 0.87 Treg L2
ENSG00000162402 USP24 523811 sc-eQTL 2.47e-01 -0.127 0.109 0.87 Treg L2
ENSG00000116133 DHCR24 851980 sc-eQTL 7.40e-01 0.037 0.111 0.866 cDC L2
ENSG00000162402 USP24 523811 sc-eQTL 4.08e-01 -0.114 0.137 0.866 cDC L2
ENSG00000116133 DHCR24 851980 sc-eQTL 2.15e-01 -0.0963 0.0775 0.87 cMono_IL1B L2
ENSG00000162402 USP24 523811 sc-eQTL 9.79e-01 -0.00235 0.088 0.87 cMono_IL1B L2
ENSG00000116133 DHCR24 851980 sc-eQTL 8.70e-01 0.0118 0.0724 0.87 cMono_S100A L2
ENSG00000162402 USP24 523811 sc-eQTL 9.49e-01 -0.00685 0.107 0.87 cMono_S100A L2
ENSG00000006555 TTC22 937852 sc-eQTL 2.33e-01 0.145 0.121 0.87 gdT L2
ENSG00000116133 DHCR24 851980 sc-eQTL 5.89e-01 -0.0735 0.136 0.87 gdT L2
ENSG00000162402 USP24 523811 sc-eQTL 4.24e-01 0.104 0.13 0.87 gdT L2
ENSG00000116133 DHCR24 851980 sc-eQTL 1.92e-01 -0.127 0.0974 0.873 intMono L2
ENSG00000162402 USP24 523811 sc-eQTL 9.97e-01 -0.00041 0.125 0.873 intMono L2
ENSG00000116133 DHCR24 851980 sc-eQTL 1.37e-01 -0.142 0.095 0.871 ncMono L2
ENSG00000162402 USP24 523811 sc-eQTL 8.95e-01 0.0143 0.108 0.871 ncMono L2
ENSG00000116133 DHCR24 851980 sc-eQTL 8.50e-01 0.0219 0.116 0.867 pDC L2
ENSG00000162402 USP24 523811 sc-eQTL 2.14e-01 0.115 0.0923 0.867 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 937852 sc-eQTL 4.84e-01 0.0867 0.124 0.87 B_Memory LOneK1K
ENSG00000116133 DHCR24 851980 sc-eQTL 2.03e-01 0.158 0.124 0.87 B_Memory LOneK1K
ENSG00000162402 USP24 523811 sc-eQTL 7.33e-02 0.159 0.0881 0.87 B_Memory LOneK1K
ENSG00000162407 PLPP3 -906126 sc-eQTL 6.45e-01 -0.051 0.111 0.87 B_Memory LOneK1K
ENSG00000006555 TTC22 937852 sc-eQTL 1.43e-01 0.196 0.133 0.87 B_Naive LOneK1K
ENSG00000116133 DHCR24 851980 sc-eQTL 7.38e-01 -0.0404 0.121 0.87 B_Naive LOneK1K
ENSG00000162402 USP24 523811 sc-eQTL 6.00e-01 -0.0448 0.0854 0.87 B_Naive LOneK1K
ENSG00000162407 PLPP3 -906126 sc-eQTL 8.64e-01 0.0228 0.133 0.87 B_Naive LOneK1K
ENSG00000116133 DHCR24 851980 sc-eQTL 6.79e-01 -0.0309 0.0745 0.87 CD14_Mono LOneK1K
ENSG00000162402 USP24 523811 sc-eQTL 9.28e-01 -0.0074 0.0815 0.87 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 851980 sc-eQTL 1.05e-01 -0.149 0.0918 0.869 CD16_Mono LOneK1K
ENSG00000162402 USP24 523811 sc-eQTL 9.39e-01 0.00799 0.104 0.869 CD16_Mono LOneK1K
ENSG00000006555 TTC22 937852 sc-eQTL 9.47e-01 0.00715 0.108 0.869 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 851980 sc-eQTL 5.91e-01 -0.0607 0.113 0.869 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 933112 sc-eQTL 8.88e-01 -0.0149 0.106 0.869 NK_CD56dim LOneK1K
ENSG00000162402 USP24 523811 sc-eQTL 1.80e-01 0.0901 0.067 0.869 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162398 LEXM 933112 eQTL 0.00725 0.0764 0.0284 0.0 0.0 0.145
ENSG00000234810 AL603840.1 409887 eQTL 1.11e-06 0.207 0.0423 0.0 0.0 0.145

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162398 LEXM 933112 2.74e-07 1.3e-07 5.03e-08 1.83e-07 1.01e-07 9.76e-08 1.53e-07 5.48e-08 1.45e-07 5.42e-08 1.54e-07 8.68e-08 1.47e-07 6.76e-08 5.91e-08 7.49e-08 4.09e-08 1.27e-07 6.07e-08 4.3e-08 1.26e-07 1.24e-07 1.44e-07 2.93e-08 1.5e-07 1.25e-07 1.07e-07 9.92e-08 1.2e-07 1.07e-07 9.92e-08 2.99e-08 3.43e-08 8e-08 6.67e-08 2.69e-08 5.45e-08 8.68e-08 6.63e-08 4.55e-08 5.28e-08 1.4e-07 5.22e-08 1.1e-08 3.81e-08 1.92e-08 1.21e-07 1.9e-09 4.99e-08
ENSG00000169174 \N 699627 2.95e-07 1.59e-07 6.86e-08 2.31e-07 1.1e-07 8.63e-08 2.16e-07 5.89e-08 1.75e-07 9.72e-08 1.66e-07 1.23e-07 2.24e-07 8e-08 5.62e-08 9.6e-08 4.63e-08 1.8e-07 7.42e-08 6.02e-08 1.27e-07 1.7e-07 1.68e-07 3.68e-08 2.17e-07 1.56e-07 1.29e-07 1.42e-07 1.37e-07 1.24e-07 1.21e-07 4.51e-08 4.34e-08 9.58e-08 4.41e-08 4.6e-08 5.1e-08 6.32e-08 6.33e-08 6.67e-08 4.84e-08 1.6e-07 4.17e-08 1.98e-08 4.36e-08 9.44e-09 7.26e-08 0.0 4.55e-08
ENSG00000234810 AL603840.1 409887 9.36e-07 7.56e-07 1.96e-07 4.37e-07 1.18e-07 3.11e-07 6.09e-07 2.47e-07 7.11e-07 3.16e-07 1.02e-06 5.01e-07 9.97e-07 1.56e-07 3.27e-07 3.96e-07 5.64e-07 4.25e-07 3.3e-07 3.06e-07 2.62e-07 5.36e-07 4.66e-07 2.95e-07 1.22e-06 2.37e-07 4.7e-07 4.4e-07 6.19e-07 7.63e-07 3.79e-07 4.44e-08 1.27e-07 1.9e-07 3.66e-07 3.05e-07 1.91e-07 1.38e-07 8.72e-08 1.79e-08 2.12e-07 7.54e-07 5.09e-08 2.66e-08 1.82e-07 4.48e-08 1.47e-07 8.08e-08 5.02e-08