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Genes within 1Mb (chr1:55731291:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 929968 sc-eQTL 2.89e-01 -0.146 0.138 0.096 B L1
ENSG00000116133 DHCR24 844096 sc-eQTL 9.40e-01 0.00978 0.13 0.096 B L1
ENSG00000162402 USP24 515927 sc-eQTL 6.25e-01 0.0389 0.0796 0.096 B L1
ENSG00000162407 PLPP3 -914010 sc-eQTL 6.19e-01 0.0673 0.135 0.096 B L1
ENSG00000006555 TTC22 929968 sc-eQTL 6.02e-01 -0.0561 0.107 0.096 CD4T L1
ENSG00000162402 USP24 515927 sc-eQTL 1.19e-01 -0.119 0.0761 0.096 CD4T L1
ENSG00000006555 TTC22 929968 sc-eQTL 5.31e-01 -0.0578 0.0921 0.096 CD8T L1
ENSG00000162402 USP24 515927 sc-eQTL 2.97e-01 -0.0796 0.0761 0.096 CD8T L1
ENSG00000116133 DHCR24 844096 sc-eQTL 1.62e-01 0.174 0.124 0.095 DC L1
ENSG00000162402 USP24 515927 sc-eQTL 7.02e-01 -0.0293 0.0764 0.095 DC L1
ENSG00000116133 DHCR24 844096 sc-eQTL 5.13e-01 0.0578 0.0882 0.096 Mono L1
ENSG00000162402 USP24 515927 sc-eQTL 6.52e-01 -0.0364 0.0808 0.096 Mono L1
ENSG00000006555 TTC22 929968 sc-eQTL 6.19e-01 -0.0604 0.121 0.097 NK L1
ENSG00000116133 DHCR24 844096 sc-eQTL 5.82e-01 -0.0676 0.122 0.097 NK L1
ENSG00000162398 LEXM 925228 sc-eQTL 5.77e-01 -0.064 0.114 0.097 NK L1
ENSG00000162402 USP24 515927 sc-eQTL 1.16e-01 -0.109 0.0691 0.097 NK L1
ENSG00000006555 TTC22 929968 sc-eQTL 4.07e-01 -0.0902 0.108 0.096 Other_T L1
ENSG00000116133 DHCR24 844096 sc-eQTL 1.10e-01 0.135 0.0838 0.096 Other_T L1
ENSG00000162402 USP24 515927 sc-eQTL 8.36e-01 -0.0207 0.0999 0.096 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 929968 sc-eQTL 7.81e-01 0.0313 0.113 0.097 B_Activated L2
ENSG00000116133 DHCR24 844096 sc-eQTL 4.30e-02 -0.267 0.131 0.097 B_Activated L2
ENSG00000162402 USP24 515927 sc-eQTL 7.64e-01 -0.0433 0.144 0.097 B_Activated L2
ENSG00000162407 PLPP3 -914010 sc-eQTL 2.98e-01 0.151 0.144 0.097 B_Activated L2
ENSG00000006555 TTC22 929968 sc-eQTL 8.60e-01 -0.026 0.147 0.097 B_Intermediate L2
ENSG00000116133 DHCR24 844096 sc-eQTL 7.35e-01 -0.0463 0.136 0.097 B_Intermediate L2
ENSG00000162402 USP24 515927 sc-eQTL 7.16e-01 -0.0392 0.108 0.097 B_Intermediate L2
ENSG00000162407 PLPP3 -914010 sc-eQTL 1.01e-01 0.225 0.137 0.097 B_Intermediate L2
ENSG00000006555 TTC22 929968 sc-eQTL 6.26e-01 -0.0681 0.139 0.093 B_Memory L2
ENSG00000116133 DHCR24 844096 sc-eQTL 6.84e-01 0.0564 0.138 0.093 B_Memory L2
ENSG00000162402 USP24 515927 sc-eQTL 7.74e-01 -0.0327 0.114 0.093 B_Memory L2
ENSG00000162407 PLPP3 -914010 sc-eQTL 9.00e-01 0.016 0.127 0.093 B_Memory L2
ENSG00000006555 TTC22 929968 sc-eQTL 8.85e-01 -0.0212 0.147 0.096 B_Naive1 L2
ENSG00000116133 DHCR24 844096 sc-eQTL 3.68e-01 0.124 0.137 0.096 B_Naive1 L2
ENSG00000162402 USP24 515927 sc-eQTL 1.61e-01 0.138 0.0981 0.096 B_Naive1 L2
ENSG00000162407 PLPP3 -914010 sc-eQTL 4.71e-01 0.098 0.136 0.096 B_Naive1 L2
ENSG00000006555 TTC22 929968 sc-eQTL 4.09e-01 -0.12 0.145 0.094 B_Naive2 L2
ENSG00000116133 DHCR24 844096 sc-eQTL 5.48e-01 -0.0762 0.127 0.094 B_Naive2 L2
ENSG00000162402 USP24 515927 sc-eQTL 7.58e-01 -0.0328 0.106 0.094 B_Naive2 L2
ENSG00000162407 PLPP3 -914010 sc-eQTL 3.52e-01 -0.116 0.125 0.094 B_Naive2 L2
ENSG00000006555 TTC22 929968 sc-eQTL 1.92e-01 -0.177 0.136 0.098 CD4_CTL L2
ENSG00000162402 USP24 515927 sc-eQTL 5.76e-01 -0.0741 0.132 0.098 CD4_CTL L2
ENSG00000006555 TTC22 929968 sc-eQTL 4.25e-01 0.0999 0.125 0.096 CD4_Naive L2
ENSG00000162402 USP24 515927 sc-eQTL 9.60e-02 -0.136 0.0816 0.096 CD4_Naive L2
ENSG00000006555 TTC22 929968 sc-eQTL 3.28e-01 -0.129 0.132 0.096 CD4_TCM L2
ENSG00000162402 USP24 515927 sc-eQTL 9.84e-01 0.00203 0.099 0.096 CD4_TCM L2
ENSG00000006555 TTC22 929968 sc-eQTL 5.32e-01 -0.0953 0.152 0.096 CD4_TEM L2
ENSG00000162402 USP24 515927 sc-eQTL 5.93e-01 -0.06 0.112 0.096 CD4_TEM L2
ENSG00000006555 TTC22 929968 sc-eQTL 1.63e-01 -0.168 0.12 0.096 CD8_CTL L2
ENSG00000162402 USP24 515927 sc-eQTL 6.46e-01 -0.0429 0.0932 0.096 CD8_CTL L2
ENSG00000006555 TTC22 929968 sc-eQTL 2.72e-01 0.149 0.135 0.096 CD8_Naive L2
ENSG00000162402 USP24 515927 sc-eQTL 6.53e-01 -0.0445 0.0988 0.096 CD8_Naive L2
ENSG00000006555 TTC22 929968 sc-eQTL 3.70e-01 -0.131 0.146 0.093 CD8_TCM L2
ENSG00000162402 USP24 515927 sc-eQTL 5.49e-02 0.237 0.123 0.093 CD8_TCM L2
ENSG00000006555 TTC22 929968 sc-eQTL 9.65e-01 0.006 0.137 0.103 CD8_TEM L2
ENSG00000162402 USP24 515927 sc-eQTL 7.58e-01 -0.0431 0.14 0.103 CD8_TEM L2
ENSG00000006555 TTC22 929968 sc-eQTL 7.72e-01 -0.038 0.131 0.097 MAIT L2
ENSG00000116133 DHCR24 844096 sc-eQTL 4.92e-01 0.0666 0.0966 0.097 MAIT L2
ENSG00000162402 USP24 515927 sc-eQTL 3.97e-01 0.0998 0.117 0.097 MAIT L2
ENSG00000006555 TTC22 929968 sc-eQTL 3.33e-01 0.142 0.146 0.098 NK_CD56bright L2
ENSG00000116133 DHCR24 844096 sc-eQTL 7.96e-01 -0.0335 0.129 0.098 NK_CD56bright L2
ENSG00000162398 LEXM 925228 sc-eQTL 2.46e-01 -0.154 0.132 0.098 NK_CD56bright L2
ENSG00000162402 USP24 515927 sc-eQTL 4.73e-01 -0.0819 0.114 0.098 NK_CD56bright L2
ENSG00000006555 TTC22 929968 sc-eQTL 3.56e-01 -0.113 0.122 0.097 NK_CD56dim L2
ENSG00000116133 DHCR24 844096 sc-eQTL 9.63e-01 -0.00591 0.128 0.097 NK_CD56dim L2
ENSG00000162398 LEXM 925228 sc-eQTL 8.30e-01 0.0271 0.126 0.097 NK_CD56dim L2
ENSG00000162402 USP24 515927 sc-eQTL 1.69e-01 -0.11 0.0795 0.097 NK_CD56dim L2
ENSG00000006555 TTC22 929968 sc-eQTL 2.70e-01 -0.157 0.142 0.103 NK_HLA L2
ENSG00000116133 DHCR24 844096 sc-eQTL 8.01e-01 -0.035 0.139 0.103 NK_HLA L2
ENSG00000162398 LEXM 925228 sc-eQTL 6.42e-01 -0.0627 0.135 0.103 NK_HLA L2
ENSG00000162402 USP24 515927 sc-eQTL 7.40e-01 -0.0329 0.0989 0.103 NK_HLA L2
ENSG00000006555 TTC22 929968 sc-eQTL 5.54e-01 -0.0772 0.13 0.097 NK_cytokine L2
ENSG00000116133 DHCR24 844096 sc-eQTL 1.98e-01 -0.17 0.131 0.097 NK_cytokine L2
ENSG00000162398 LEXM 925228 sc-eQTL 4.35e-01 -0.107 0.137 0.097 NK_cytokine L2
ENSG00000162402 USP24 515927 sc-eQTL 1.22e-01 -0.145 0.0932 0.097 NK_cytokine L2
ENSG00000006555 TTC22 929968 sc-eQTL 8.73e-01 0.0274 0.171 0.1 PB L2
ENSG00000116133 DHCR24 844096 sc-eQTL 6.21e-02 0.281 0.149 0.1 PB L2
ENSG00000162402 USP24 515927 sc-eQTL 8.46e-01 0.0359 0.184 0.1 PB L2
ENSG00000162407 PLPP3 -914010 sc-eQTL 6.22e-02 0.307 0.163 0.1 PB L2
ENSG00000006555 TTC22 929968 sc-eQTL 4.55e-01 0.1 0.134 0.091 Pro_T L2
ENSG00000116133 DHCR24 844096 sc-eQTL 5.95e-02 0.214 0.113 0.091 Pro_T L2
ENSG00000162402 USP24 515927 sc-eQTL 3.24e-01 -0.127 0.129 0.091 Pro_T L2
ENSG00000006555 TTC22 929968 sc-eQTL 6.16e-02 0.253 0.134 0.096 Treg L2
ENSG00000162402 USP24 515927 sc-eQTL 4.25e-01 0.0963 0.12 0.096 Treg L2
ENSG00000116133 DHCR24 844096 sc-eQTL 6.99e-01 0.0478 0.124 0.098 cDC L2
ENSG00000162402 USP24 515927 sc-eQTL 7.31e-01 0.0524 0.152 0.098 cDC L2
ENSG00000116133 DHCR24 844096 sc-eQTL 1.23e-01 0.133 0.0861 0.096 cMono_IL1B L2
ENSG00000162402 USP24 515927 sc-eQTL 3.71e-01 -0.0876 0.0978 0.096 cMono_IL1B L2
ENSG00000116133 DHCR24 844096 sc-eQTL 7.65e-01 0.0242 0.081 0.096 cMono_S100A L2
ENSG00000162402 USP24 515927 sc-eQTL 2.68e-01 0.133 0.12 0.096 cMono_S100A L2
ENSG00000006555 TTC22 929968 sc-eQTL 4.97e-01 -0.0906 0.133 0.097 gdT L2
ENSG00000116133 DHCR24 844096 sc-eQTL 9.11e-01 -0.0167 0.148 0.097 gdT L2
ENSG00000162402 USP24 515927 sc-eQTL 9.06e-01 0.017 0.143 0.097 gdT L2
ENSG00000116133 DHCR24 844096 sc-eQTL 2.01e-01 0.138 0.108 0.096 intMono L2
ENSG00000162402 USP24 515927 sc-eQTL 8.89e-01 -0.0192 0.138 0.096 intMono L2
ENSG00000116133 DHCR24 844096 sc-eQTL 5.13e-01 0.0691 0.105 0.1 ncMono L2
ENSG00000162402 USP24 515927 sc-eQTL 7.60e-01 -0.0364 0.119 0.1 ncMono L2
ENSG00000116133 DHCR24 844096 sc-eQTL 5.81e-01 0.0685 0.124 0.099 pDC L2
ENSG00000162402 USP24 515927 sc-eQTL 1.82e-01 -0.132 0.0988 0.099 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 929968 sc-eQTL 4.95e-01 -0.0946 0.139 0.096 B_Memory LOneK1K
ENSG00000116133 DHCR24 844096 sc-eQTL 2.57e-01 -0.158 0.139 0.096 B_Memory LOneK1K
ENSG00000162402 USP24 515927 sc-eQTL 3.30e-01 -0.0969 0.0992 0.096 B_Memory LOneK1K
ENSG00000162407 PLPP3 -914010 sc-eQTL 9.12e-02 0.209 0.123 0.096 B_Memory LOneK1K
ENSG00000006555 TTC22 929968 sc-eQTL 2.66e-01 -0.164 0.147 0.096 B_Naive LOneK1K
ENSG00000116133 DHCR24 844096 sc-eQTL 7.37e-01 -0.0446 0.133 0.096 B_Naive LOneK1K
ENSG00000162402 USP24 515927 sc-eQTL 2.35e-01 0.112 0.0938 0.096 B_Naive LOneK1K
ENSG00000162407 PLPP3 -914010 sc-eQTL 9.19e-01 0.015 0.147 0.096 B_Naive LOneK1K
ENSG00000116133 DHCR24 844096 sc-eQTL 3.29e-01 0.0812 0.0831 0.096 CD14_Mono LOneK1K
ENSG00000162402 USP24 515927 sc-eQTL 1.00e+00 -4.1e-05 0.091 0.096 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 844096 sc-eQTL 2.18e-01 0.125 0.101 0.097 CD16_Mono LOneK1K
ENSG00000162402 USP24 515927 sc-eQTL 7.37e-01 -0.0383 0.114 0.097 CD16_Mono LOneK1K
ENSG00000006555 TTC22 929968 sc-eQTL 3.74e-01 -0.106 0.119 0.097 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 844096 sc-eQTL 5.49e-01 -0.0746 0.124 0.097 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 925228 sc-eQTL 6.89e-01 -0.0467 0.117 0.097 NK_CD56dim LOneK1K
ENSG00000162402 USP24 515927 sc-eQTL 9.90e-02 -0.122 0.0736 0.097 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162396 PARS2 966768 eQTL 0.0273 0.0935 0.0423 0.00133 0.0 0.107
ENSG00000162398 LEXM 925228 eQTL 0.0203 -0.0736 0.0317 0.0 0.0 0.107
ENSG00000234810 AL603840.1 402003 eQTL 0.00022 -0.176 0.0473 0.0 0.0 0.107

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162398 LEXM 925228 2.74e-07 1.3e-07 3.69e-08 1.83e-07 9.01e-08 9.76e-08 1.53e-07 5.19e-08 1.44e-07 4.74e-08 1.62e-07 8.55e-08 1.47e-07 6.76e-08 6.02e-08 7.37e-08 3.98e-08 1.21e-07 5.39e-08 4.04e-08 1.08e-07 1.27e-07 1.34e-07 3.68e-08 1.4e-07 1.14e-07 1.06e-07 9.57e-08 1.08e-07 1.07e-07 9.7e-08 3.68e-08 3.61e-08 8.44e-08 6.34e-08 3.6e-08 5.04e-08 9.23e-08 6.59e-08 4.19e-08 5.14e-08 1.35e-07 5.27e-08 7.51e-09 5.15e-08 1.84e-08 1.22e-07 3.79e-09 5.04e-08
ENSG00000162407 \N -914010 2.74e-07 1.3e-07 3.88e-08 1.9e-07 9.01e-08 9.9e-08 1.53e-07 5.19e-08 1.45e-07 4.74e-08 1.57e-07 8.55e-08 1.47e-07 6.76e-08 6.02e-08 7.37e-08 3.87e-08 1.26e-07 5.39e-08 4.04e-08 1.13e-07 1.27e-07 1.34e-07 3.68e-08 1.4e-07 1.14e-07 1.06e-07 9.57e-08 1.08e-07 1.02e-07 9.7e-08 3.68e-08 3.66e-08 8.44e-08 6.34e-08 3.6e-08 5.31e-08 9.23e-08 6.59e-08 4.47e-08 5.43e-08 1.36e-07 5.24e-08 7.43e-09 5.15e-08 1.86e-08 1.22e-07 3.78e-09 5.04e-08
ENSG00000234810 AL603840.1 402003 1.29e-06 8.81e-07 1.48e-07 3.65e-07 9.33e-08 3.12e-07 7.02e-07 1.56e-07 7.15e-07 2.88e-07 1.09e-06 5.22e-07 1.35e-06 2.06e-07 3.58e-07 2.99e-07 5.56e-07 4.31e-07 2.79e-07 2.25e-07 2.61e-07 5.34e-07 4.01e-07 2.27e-07 1.38e-06 2.56e-07 4.27e-07 3.24e-07 5.41e-07 8.38e-07 4.32e-07 3.34e-08 8.37e-08 1.88e-07 3.22e-07 1.85e-07 1.38e-07 1.21e-07 1.12e-07 9.5e-09 1.12e-07 1.02e-06 6.04e-08 3.38e-08 1.58e-07 4.28e-08 1.21e-07 3.79e-08 5.4e-08