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Genes within 1Mb (chr1:55725964:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 924641 sc-eQTL 3.96e-01 -0.118 0.139 0.092 B L1
ENSG00000116133 DHCR24 838769 sc-eQTL 9.27e-01 0.012 0.132 0.092 B L1
ENSG00000162402 USP24 510600 sc-eQTL 7.14e-01 0.0295 0.0803 0.092 B L1
ENSG00000162407 PLPP3 -919337 sc-eQTL 7.40e-01 0.0453 0.136 0.092 B L1
ENSG00000006555 TTC22 924641 sc-eQTL 8.04e-01 -0.0269 0.108 0.092 CD4T L1
ENSG00000162402 USP24 510600 sc-eQTL 5.73e-02 -0.146 0.0766 0.092 CD4T L1
ENSG00000006555 TTC22 924641 sc-eQTL 5.85e-01 -0.051 0.0933 0.092 CD8T L1
ENSG00000162402 USP24 510600 sc-eQTL 2.98e-01 -0.0804 0.0771 0.092 CD8T L1
ENSG00000116133 DHCR24 838769 sc-eQTL 1.00e-01 0.206 0.125 0.09 DC L1
ENSG00000162402 USP24 510600 sc-eQTL 4.72e-01 -0.0555 0.077 0.09 DC L1
ENSG00000116133 DHCR24 838769 sc-eQTL 5.26e-01 0.057 0.0897 0.092 Mono L1
ENSG00000162402 USP24 510600 sc-eQTL 8.63e-01 -0.0142 0.0822 0.092 Mono L1
ENSG00000006555 TTC22 924641 sc-eQTL 9.32e-01 -0.0105 0.123 0.092 NK L1
ENSG00000116133 DHCR24 838769 sc-eQTL 7.16e-01 -0.0453 0.124 0.092 NK L1
ENSG00000162398 LEXM 919901 sc-eQTL 7.70e-01 -0.034 0.116 0.092 NK L1
ENSG00000162402 USP24 510600 sc-eQTL 7.47e-02 -0.125 0.07 0.092 NK L1
ENSG00000006555 TTC22 924641 sc-eQTL 2.18e-01 -0.135 0.109 0.092 Other_T L1
ENSG00000116133 DHCR24 838769 sc-eQTL 1.72e-01 0.116 0.0845 0.092 Other_T L1
ENSG00000162402 USP24 510600 sc-eQTL 8.99e-01 -0.0128 0.101 0.092 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 924641 sc-eQTL 7.38e-01 0.038 0.114 0.094 B_Activated L2
ENSG00000116133 DHCR24 838769 sc-eQTL 4.09e-02 -0.272 0.132 0.094 B_Activated L2
ENSG00000162402 USP24 510600 sc-eQTL 8.36e-01 -0.0302 0.145 0.094 B_Activated L2
ENSG00000162407 PLPP3 -919337 sc-eQTL 2.37e-01 0.173 0.146 0.094 B_Activated L2
ENSG00000006555 TTC22 924641 sc-eQTL 8.39e-01 0.0303 0.149 0.092 B_Intermediate L2
ENSG00000116133 DHCR24 838769 sc-eQTL 6.88e-01 -0.0556 0.138 0.092 B_Intermediate L2
ENSG00000162402 USP24 510600 sc-eQTL 6.28e-01 -0.0528 0.109 0.092 B_Intermediate L2
ENSG00000162407 PLPP3 -919337 sc-eQTL 2.41e-01 0.163 0.139 0.092 B_Intermediate L2
ENSG00000006555 TTC22 924641 sc-eQTL 8.57e-01 -0.0254 0.141 0.088 B_Memory L2
ENSG00000116133 DHCR24 838769 sc-eQTL 6.76e-01 0.0587 0.14 0.088 B_Memory L2
ENSG00000162402 USP24 510600 sc-eQTL 7.97e-01 -0.0298 0.116 0.088 B_Memory L2
ENSG00000162407 PLPP3 -919337 sc-eQTL 9.22e-01 -0.0126 0.129 0.088 B_Memory L2
ENSG00000006555 TTC22 924641 sc-eQTL 8.49e-01 -0.0282 0.148 0.092 B_Naive1 L2
ENSG00000116133 DHCR24 838769 sc-eQTL 4.58e-01 0.103 0.138 0.092 B_Naive1 L2
ENSG00000162402 USP24 510600 sc-eQTL 1.51e-01 0.142 0.0987 0.092 B_Naive1 L2
ENSG00000162407 PLPP3 -919337 sc-eQTL 7.35e-01 0.0464 0.137 0.092 B_Naive1 L2
ENSG00000006555 TTC22 924641 sc-eQTL 2.81e-01 -0.159 0.147 0.09 B_Naive2 L2
ENSG00000116133 DHCR24 838769 sc-eQTL 7.86e-01 -0.035 0.129 0.09 B_Naive2 L2
ENSG00000162402 USP24 510600 sc-eQTL 6.54e-01 -0.0484 0.108 0.09 B_Naive2 L2
ENSG00000162407 PLPP3 -919337 sc-eQTL 5.06e-01 -0.0843 0.127 0.09 B_Naive2 L2
ENSG00000006555 TTC22 924641 sc-eQTL 1.67e-01 -0.19 0.137 0.093 CD4_CTL L2
ENSG00000162402 USP24 510600 sc-eQTL 6.42e-01 -0.0623 0.134 0.093 CD4_CTL L2
ENSG00000006555 TTC22 924641 sc-eQTL 4.53e-01 0.0949 0.126 0.092 CD4_Naive L2
ENSG00000162402 USP24 510600 sc-eQTL 3.46e-02 -0.175 0.0821 0.092 CD4_Naive L2
ENSG00000006555 TTC22 924641 sc-eQTL 1.56e-01 -0.19 0.133 0.092 CD4_TCM L2
ENSG00000162402 USP24 510600 sc-eQTL 9.32e-01 0.00863 0.1 0.092 CD4_TCM L2
ENSG00000006555 TTC22 924641 sc-eQTL 8.37e-01 -0.0318 0.154 0.092 CD4_TEM L2
ENSG00000162402 USP24 510600 sc-eQTL 7.07e-01 -0.0429 0.114 0.092 CD4_TEM L2
ENSG00000006555 TTC22 924641 sc-eQTL 1.43e-01 -0.178 0.121 0.092 CD8_CTL L2
ENSG00000162402 USP24 510600 sc-eQTL 6.15e-01 -0.0475 0.0943 0.092 CD8_CTL L2
ENSG00000006555 TTC22 924641 sc-eQTL 3.06e-01 0.141 0.137 0.092 CD8_Naive L2
ENSG00000162402 USP24 510600 sc-eQTL 6.63e-01 -0.0438 0.1 0.092 CD8_Naive L2
ENSG00000006555 TTC22 924641 sc-eQTL 2.56e-01 -0.168 0.147 0.09 CD8_TCM L2
ENSG00000162402 USP24 510600 sc-eQTL 1.38e-01 0.185 0.124 0.09 CD8_TCM L2
ENSG00000006555 TTC22 924641 sc-eQTL 9.48e-01 0.00914 0.139 0.098 CD8_TEM L2
ENSG00000162402 USP24 510600 sc-eQTL 6.65e-01 -0.0615 0.142 0.098 CD8_TEM L2
ENSG00000006555 TTC22 924641 sc-eQTL 5.85e-01 -0.0723 0.132 0.093 MAIT L2
ENSG00000116133 DHCR24 838769 sc-eQTL 7.43e-01 0.0321 0.098 0.093 MAIT L2
ENSG00000162402 USP24 510600 sc-eQTL 4.45e-01 0.0911 0.119 0.093 MAIT L2
ENSG00000006555 TTC22 924641 sc-eQTL 2.89e-01 0.156 0.147 0.096 NK_CD56bright L2
ENSG00000116133 DHCR24 838769 sc-eQTL 8.33e-01 -0.0275 0.13 0.096 NK_CD56bright L2
ENSG00000162398 LEXM 919901 sc-eQTL 3.64e-01 -0.121 0.133 0.096 NK_CD56bright L2
ENSG00000162402 USP24 510600 sc-eQTL 4.91e-01 -0.0791 0.115 0.096 NK_CD56bright L2
ENSG00000006555 TTC22 924641 sc-eQTL 6.51e-01 -0.056 0.124 0.093 NK_CD56dim L2
ENSG00000116133 DHCR24 838769 sc-eQTL 8.16e-01 0.03 0.129 0.093 NK_CD56dim L2
ENSG00000162398 LEXM 919901 sc-eQTL 7.28e-01 0.0441 0.127 0.093 NK_CD56dim L2
ENSG00000162402 USP24 510600 sc-eQTL 1.12e-01 -0.128 0.0801 0.093 NK_CD56dim L2
ENSG00000006555 TTC22 924641 sc-eQTL 3.09e-01 -0.146 0.144 0.098 NK_HLA L2
ENSG00000116133 DHCR24 838769 sc-eQTL 9.41e-01 0.0104 0.14 0.098 NK_HLA L2
ENSG00000162398 LEXM 919901 sc-eQTL 7.17e-01 -0.0494 0.136 0.098 NK_HLA L2
ENSG00000162402 USP24 510600 sc-eQTL 6.56e-01 -0.0446 0.1 0.098 NK_HLA L2
ENSG00000006555 TTC22 924641 sc-eQTL 6.85e-01 -0.0536 0.132 0.093 NK_cytokine L2
ENSG00000116133 DHCR24 838769 sc-eQTL 2.24e-01 -0.162 0.133 0.093 NK_cytokine L2
ENSG00000162398 LEXM 919901 sc-eQTL 6.36e-01 -0.0661 0.139 0.093 NK_cytokine L2
ENSG00000162402 USP24 510600 sc-eQTL 5.04e-02 -0.185 0.0941 0.093 NK_cytokine L2
ENSG00000006555 TTC22 924641 sc-eQTL 7.05e-01 0.0664 0.175 0.093 PB L2
ENSG00000116133 DHCR24 838769 sc-eQTL 3.38e-02 0.326 0.152 0.093 PB L2
ENSG00000162402 USP24 510600 sc-eQTL 8.78e-01 -0.0289 0.188 0.093 PB L2
ENSG00000162407 PLPP3 -919337 sc-eQTL 3.37e-02 0.358 0.166 0.093 PB L2
ENSG00000006555 TTC22 924641 sc-eQTL 5.21e-01 0.0867 0.135 0.089 Pro_T L2
ENSG00000116133 DHCR24 838769 sc-eQTL 3.28e-02 0.244 0.113 0.089 Pro_T L2
ENSG00000162402 USP24 510600 sc-eQTL 2.95e-01 -0.136 0.13 0.089 Pro_T L2
ENSG00000006555 TTC22 924641 sc-eQTL 2.38e-02 0.311 0.136 0.092 Treg L2
ENSG00000162402 USP24 510600 sc-eQTL 3.82e-01 0.107 0.123 0.092 Treg L2
ENSG00000116133 DHCR24 838769 sc-eQTL 6.47e-01 0.0576 0.125 0.093 cDC L2
ENSG00000162402 USP24 510600 sc-eQTL 8.41e-01 0.0312 0.155 0.093 cDC L2
ENSG00000116133 DHCR24 838769 sc-eQTL 1.30e-01 0.133 0.0876 0.092 cMono_IL1B L2
ENSG00000162402 USP24 510600 sc-eQTL 4.82e-01 -0.07 0.0996 0.092 cMono_IL1B L2
ENSG00000116133 DHCR24 838769 sc-eQTL 8.97e-01 0.0107 0.0824 0.092 cMono_S100A L2
ENSG00000162402 USP24 510600 sc-eQTL 1.90e-01 0.16 0.122 0.092 cMono_S100A L2
ENSG00000006555 TTC22 924641 sc-eQTL 4.22e-01 -0.109 0.135 0.094 gdT L2
ENSG00000116133 DHCR24 838769 sc-eQTL 9.95e-01 -0.001 0.15 0.094 gdT L2
ENSG00000162402 USP24 510600 sc-eQTL 8.21e-01 -0.0329 0.145 0.094 gdT L2
ENSG00000116133 DHCR24 838769 sc-eQTL 1.97e-01 0.141 0.109 0.091 intMono L2
ENSG00000162402 USP24 510600 sc-eQTL 9.68e-01 -0.00559 0.14 0.091 intMono L2
ENSG00000116133 DHCR24 838769 sc-eQTL 4.69e-01 0.0774 0.107 0.095 ncMono L2
ENSG00000162402 USP24 510600 sc-eQTL 8.06e-01 -0.0297 0.121 0.095 ncMono L2
ENSG00000116133 DHCR24 838769 sc-eQTL 4.35e-01 0.0978 0.125 0.096 pDC L2
ENSG00000162402 USP24 510600 sc-eQTL 2.03e-01 -0.128 0.0999 0.096 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 924641 sc-eQTL 7.95e-01 -0.0366 0.14 0.092 B_Memory LOneK1K
ENSG00000116133 DHCR24 838769 sc-eQTL 2.83e-01 -0.151 0.14 0.092 B_Memory LOneK1K
ENSG00000162402 USP24 510600 sc-eQTL 3.43e-01 -0.0954 0.1 0.092 B_Memory LOneK1K
ENSG00000162407 PLPP3 -919337 sc-eQTL 1.41e-01 0.184 0.125 0.092 B_Memory LOneK1K
ENSG00000006555 TTC22 924641 sc-eQTL 1.96e-01 -0.192 0.148 0.092 B_Naive LOneK1K
ENSG00000116133 DHCR24 838769 sc-eQTL 8.29e-01 -0.029 0.134 0.092 B_Naive LOneK1K
ENSG00000162402 USP24 510600 sc-eQTL 3.20e-01 0.0944 0.0947 0.092 B_Naive LOneK1K
ENSG00000162407 PLPP3 -919337 sc-eQTL 9.12e-01 -0.0163 0.148 0.092 B_Naive LOneK1K
ENSG00000116133 DHCR24 838769 sc-eQTL 3.62e-01 0.0773 0.0847 0.092 CD14_Mono LOneK1K
ENSG00000162402 USP24 510600 sc-eQTL 8.43e-01 0.0184 0.0927 0.092 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 838769 sc-eQTL 2.50e-01 0.118 0.102 0.093 CD16_Mono LOneK1K
ENSG00000162402 USP24 510600 sc-eQTL 7.64e-01 -0.0348 0.116 0.093 CD16_Mono LOneK1K
ENSG00000006555 TTC22 924641 sc-eQTL 5.93e-01 -0.0646 0.121 0.093 NK_CD56dim LOneK1K
ENSG00000116133 DHCR24 838769 sc-eQTL 6.85e-01 -0.0511 0.126 0.093 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 919901 sc-eQTL 8.42e-01 -0.0236 0.118 0.093 NK_CD56dim LOneK1K
ENSG00000162402 USP24 510600 sc-eQTL 5.01e-02 -0.147 0.0744 0.093 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162396 PARS2 961441 eQTL 0.0491 0.0857 0.0435 0.0 0.0 0.101
ENSG00000162398 LEXM 919901 eQTL 0.0397 -0.067 0.0325 0.0 0.0 0.101
ENSG00000162407 PLPP3 -919337 eQTL 0.0319 0.0696 0.0324 0.00131 0.0 0.101
ENSG00000234810 AL603840.1 396676 eQTL 0.000262 -0.178 0.0486 0.0 0.0 0.101

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162398 LEXM 919901 1.25e-06 9.27e-07 3.18e-07 6.31e-07 1.14e-07 4.23e-07 7e-07 9.26e-08 8.36e-07 3.05e-07 1.09e-06 6.19e-07 1.33e-06 2.33e-07 4.19e-07 3.57e-07 3.52e-07 5.53e-07 5.54e-07 3.93e-07 2.38e-07 6.27e-07 4.2e-07 1.58e-07 1.38e-06 2.49e-07 3.1e-07 4.92e-07 5.9e-07 8.43e-07 4.39e-07 6.42e-08 5.78e-08 3.03e-07 3.21e-07 1.55e-07 1.44e-07 1.24e-07 1.13e-07 9.61e-09 1.02e-07 1.46e-06 5.81e-08 4.13e-08 1.1e-07 6.01e-08 1.11e-07 7.19e-08 5.47e-08
ENSG00000162407 PLPP3 -919337 1.25e-06 9.27e-07 3.08e-07 6.31e-07 1.14e-07 4.23e-07 7e-07 9.26e-08 8.36e-07 3.05e-07 1.09e-06 6.19e-07 1.35e-06 2.33e-07 4.19e-07 3.57e-07 3.52e-07 5.53e-07 5.54e-07 3.96e-07 2.38e-07 6.48e-07 4.2e-07 1.61e-07 1.39e-06 2.49e-07 3.1e-07 4.92e-07 5.9e-07 8.43e-07 4.39e-07 6.42e-08 5.78e-08 3.03e-07 3.21e-07 1.55e-07 1.44e-07 1.24e-07 1.13e-07 9.61e-09 1.03e-07 1.46e-06 5.81e-08 4.13e-08 1.1e-07 6.01e-08 1.11e-07 7.19e-08 5.47e-08
ENSG00000234810 AL603840.1 396676 4.74e-06 4.7e-06 6.63e-07 3.18e-06 9.11e-07 1.55e-06 3e-06 6.09e-07 4.57e-06 2.06e-06 4.22e-06 3.28e-06 6.55e-06 2.01e-06 1.31e-06 2.43e-06 1.52e-06 3.26e-06 1.47e-06 1e-06 2.28e-06 4.22e-06 3.2e-06 1.17e-06 4.89e-06 1.21e-06 1.53e-06 1.79e-06 3.87e-06 3.61e-06 1.98e-06 4.71e-07 6.07e-07 1.76e-06 2.06e-06 9.19e-07 8.9e-07 4.4e-07 1.1e-06 4.23e-07 3.48e-07 7.76e-06 6.62e-07 1.84e-07 3.01e-07 3.4e-07 8.3e-07 2.23e-07 3.24e-07