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Genes within 1Mb (chr1:54498627:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 608829 sc-eQTL 8.68e-01 -0.0343 0.206 0.051 cDC L2
ENSG00000058804 NDC1 660164 sc-eQTL 6.97e-01 -0.0816 0.209 0.051 cDC L2
ENSG00000081870 HSPB11 552698 sc-eQTL 5.51e-01 0.132 0.221 0.051 cDC L2
ENSG00000116133 DHCR24 -388568 sc-eQTL 7.26e-01 -0.06 0.171 0.051 cDC L2
ENSG00000116205 TCEANC2 445043 sc-eQTL 6.69e-01 -0.0862 0.202 0.051 cDC L2
ENSG00000116209 TMEM59 445123 sc-eQTL 8.05e-01 0.0425 0.171 0.051 cDC L2
ENSG00000116212 LRRC42 552542 sc-eQTL 3.45e-01 -0.198 0.209 0.051 cDC L2
ENSG00000116221 MRPL37 314586 sc-eQTL 6.32e-01 0.105 0.219 0.051 cDC L2
ENSG00000157216 SSBP3 85148 sc-eQTL 3.11e-01 0.205 0.202 0.051 cDC L2
ENSG00000162390 ACOT11 -43630 sc-eQTL 3.75e-01 -0.167 0.188 0.051 cDC L2
ENSG00000162402 USP24 -716737 sc-eQTL 3.85e-02 -0.434 0.208 0.051 cDC L2
ENSG00000215883 CYB5RL 298591 sc-eQTL 5.40e-01 -0.111 0.181 0.051 cDC L2
ENSG00000243725 TTC4 -217234 sc-eQTL 5.91e-01 -0.116 0.216 0.051 cDC L2
ENSG00000006555 TTC22 -302696 sc-eQTL 1.63e-01 0.279 0.199 0.055 gdT L2
ENSG00000058799 YIPF1 608829 sc-eQTL 7.60e-01 -0.0765 0.249 0.055 gdT L2
ENSG00000058804 NDC1 660164 sc-eQTL 3.31e-01 -0.237 0.243 0.055 gdT L2
ENSG00000081870 HSPB11 552698 sc-eQTL 8.50e-01 -0.0528 0.278 0.055 gdT L2
ENSG00000116133 DHCR24 -388568 sc-eQTL 5.50e-01 -0.134 0.223 0.055 gdT L2
ENSG00000116205 TCEANC2 445043 sc-eQTL 6.71e-01 0.0953 0.224 0.055 gdT L2
ENSG00000116209 TMEM59 445123 sc-eQTL 8.85e-01 0.0331 0.227 0.055 gdT L2
ENSG00000116212 LRRC42 552542 sc-eQTL 3.53e-01 0.248 0.266 0.055 gdT L2
ENSG00000116221 MRPL37 314586 sc-eQTL 1.54e-01 0.371 0.259 0.055 gdT L2
ENSG00000157216 SSBP3 85148 sc-eQTL 3.17e-01 0.16 0.159 0.055 gdT L2
ENSG00000162402 USP24 -716737 sc-eQTL 7.39e-01 -0.0715 0.214 0.055 gdT L2
ENSG00000215883 CYB5RL 298591 sc-eQTL 2.59e-01 -0.251 0.222 0.055 gdT L2
ENSG00000243725 TTC4 -217234 sc-eQTL 7.97e-01 -0.0647 0.251 0.055 gdT L2
ENSG00000058799 YIPF1 608829 sc-eQTL 7.54e-01 0.0663 0.211 0.059 pDC L2
ENSG00000058804 NDC1 660164 sc-eQTL 1.90e-01 -0.276 0.21 0.059 pDC L2
ENSG00000081870 HSPB11 552698 sc-eQTL 7.76e-01 0.0529 0.185 0.059 pDC L2
ENSG00000116133 DHCR24 -388568 sc-eQTL 9.87e-01 -0.00273 0.17 0.059 pDC L2
ENSG00000116205 TCEANC2 445043 sc-eQTL 5.50e-01 -0.122 0.204 0.059 pDC L2
ENSG00000116209 TMEM59 445123 sc-eQTL 1.86e-01 -0.216 0.162 0.059 pDC L2
ENSG00000116212 LRRC42 552542 sc-eQTL 1.39e-01 0.3 0.202 0.059 pDC L2
ENSG00000116221 MRPL37 314586 sc-eQTL 6.12e-01 0.11 0.217 0.059 pDC L2
ENSG00000157216 SSBP3 85148 sc-eQTL 2.14e-01 0.239 0.192 0.059 pDC L2
ENSG00000162390 ACOT11 -43630 sc-eQTL 3.03e-01 0.0833 0.0807 0.059 pDC L2
ENSG00000162402 USP24 -716737 sc-eQTL 6.02e-01 0.0714 0.137 0.059 pDC L2
ENSG00000215883 CYB5RL 298591 sc-eQTL 9.95e-01 0.00112 0.187 0.059 pDC L2
ENSG00000243725 TTC4 -217234 sc-eQTL 2.99e-01 -0.224 0.215 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162399 BSND -499566 pQTL 0.0249 -0.156 0.0696 0.00127 0.0 0.0477

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina