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Genes within 1Mb (chr1:53189267:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -700531 sc-eQTL 8.60e-01 -0.038 0.216 0.051 B_Activated L2
ENSG00000058804 NDC1 -649196 sc-eQTL 6.51e-01 -0.0918 0.203 0.051 B_Activated L2
ENSG00000081870 HSPB11 -756662 sc-eQTL 5.78e-01 -0.122 0.219 0.051 B_Activated L2
ENSG00000116157 GPX7 586896 sc-eQTL 7.80e-01 0.0617 0.22 0.051 B_Activated L2
ENSG00000116171 SCP2 261991 sc-eQTL 6.12e-01 -0.105 0.207 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -864317 sc-eQTL 4.70e-01 -0.145 0.2 0.051 B_Activated L2
ENSG00000116209 TMEM59 -864237 sc-eQTL 7.64e-01 0.0641 0.213 0.051 B_Activated L2
ENSG00000116212 LRRC42 -756818 sc-eQTL 7.33e-01 -0.0706 0.207 0.051 B_Activated L2
ENSG00000116221 MRPL37 -994774 sc-eQTL 5.27e-01 0.146 0.23 0.051 B_Activated L2
ENSG00000121310 ECHDC2 262055 sc-eQTL 4.07e-02 -0.475 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 635780 sc-eQTL 8.27e-01 0.0484 0.221 0.051 B_Activated L2
ENSG00000134748 PRPF38A 784665 sc-eQTL 3.06e-01 0.229 0.223 0.051 B_Activated L2
ENSG00000154222 CC2D1B 823074 sc-eQTL 1.62e-01 0.305 0.217 0.051 B_Activated L2
ENSG00000157184 CPT2 -7525 sc-eQTL 7.43e-01 -0.0659 0.2 0.051 B_Activated L2
ENSG00000157193 LRP8 -139202 sc-eQTL 6.33e-01 0.0926 0.194 0.051 B_Activated L2
ENSG00000162377 COA7 490920 sc-eQTL 2.42e-01 -0.218 0.185 0.051 B_Activated L2
ENSG00000162378 ZYG11B 462814 sc-eQTL 2.03e-01 0.29 0.227 0.051 B_Activated L2
ENSG00000162384 CZIB -31367 sc-eQTL 3.22e-01 -0.223 0.224 0.051 B_Activated L2
ENSG00000162385 MAGOH -49251 sc-eQTL 5.78e-01 0.13 0.233 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 556099 sc-eQTL 3.37e-01 -0.193 0.2 0.051 B_Activated L2
ENSG00000230138 LINC02812 -178978 sc-eQTL 9.95e-01 -0.00114 0.196 0.051 B_Activated L2
ENSG00000058799 YIPF1 -700531 sc-eQTL 5.41e-01 0.131 0.213 0.05 CD8_TEM L2
ENSG00000058804 NDC1 -649196 sc-eQTL 1.43e-01 -0.297 0.202 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 -756662 sc-eQTL 3.67e-01 -0.174 0.192 0.05 CD8_TEM L2
ENSG00000116157 GPX7 586896 sc-eQTL 3.29e-01 -0.202 0.206 0.05 CD8_TEM L2
ENSG00000116171 SCP2 261991 sc-eQTL 5.14e-01 0.115 0.175 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -864317 sc-eQTL 4.04e-01 0.173 0.207 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -864237 sc-eQTL 7.19e-01 -0.0724 0.201 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 -756818 sc-eQTL 5.97e-01 0.115 0.216 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 -994774 sc-eQTL 9.66e-01 0.00877 0.204 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 262055 sc-eQTL 7.96e-03 0.586 0.219 0.05 CD8_TEM L2
ENSG00000134744 TUT4 635780 sc-eQTL 1.68e-01 0.273 0.197 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A 784665 sc-eQTL 3.19e-01 -0.206 0.206 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B 823074 sc-eQTL 7.11e-01 0.0763 0.206 0.05 CD8_TEM L2
ENSG00000157184 CPT2 -7525 sc-eQTL 3.91e-03 0.604 0.207 0.05 CD8_TEM L2
ENSG00000157193 LRP8 -139202 sc-eQTL 6.83e-01 0.0827 0.202 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B 462814 sc-eQTL 4.17e-01 0.17 0.209 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 46635 sc-eQTL 6.07e-02 0.244 0.13 0.05 CD8_TEM L2
ENSG00000162384 CZIB -31367 sc-eQTL 9.66e-01 0.00916 0.217 0.05 CD8_TEM L2
ENSG00000162385 MAGOH -49251 sc-eQTL 1.52e-01 -0.262 0.182 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A 556099 sc-eQTL 5.22e-01 -0.127 0.198 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 -700531 sc-eQTL 3.00e-01 -0.168 0.161 0.056 PB L2
ENSG00000058804 NDC1 -649196 sc-eQTL 3.94e-01 0.206 0.24 0.056 PB L2
ENSG00000081870 HSPB11 -756662 sc-eQTL 5.71e-01 -0.115 0.203 0.056 PB L2
ENSG00000116157 GPX7 586896 sc-eQTL 9.76e-01 0.00607 0.203 0.056 PB L2
ENSG00000116171 SCP2 261991 sc-eQTL 8.21e-01 0.0399 0.176 0.056 PB L2
ENSG00000116205 TCEANC2 -864317 sc-eQTL 2.33e-01 0.296 0.247 0.056 PB L2
ENSG00000116209 TMEM59 -864237 sc-eQTL 8.06e-01 -0.0255 0.104 0.056 PB L2
ENSG00000116212 LRRC42 -756818 sc-eQTL 4.99e-01 -0.159 0.234 0.056 PB L2
ENSG00000116221 MRPL37 -994774 sc-eQTL 4.82e-01 0.133 0.188 0.056 PB L2
ENSG00000121310 ECHDC2 262055 sc-eQTL 8.73e-03 0.676 0.253 0.056 PB L2
ENSG00000134744 TUT4 635780 sc-eQTL 1.34e-01 0.357 0.237 0.056 PB L2
ENSG00000134748 PRPF38A 784665 sc-eQTL 5.94e-01 0.12 0.225 0.056 PB L2
ENSG00000154222 CC2D1B 823074 sc-eQTL 8.41e-02 -0.426 0.245 0.056 PB L2
ENSG00000157184 CPT2 -7525 sc-eQTL 7.41e-01 -0.0745 0.225 0.056 PB L2
ENSG00000157193 LRP8 -139202 sc-eQTL 8.59e-01 -0.0423 0.238 0.056 PB L2
ENSG00000162377 COA7 490920 sc-eQTL 1.19e-01 -0.36 0.229 0.056 PB L2
ENSG00000162378 ZYG11B 462814 sc-eQTL 2.74e-01 0.277 0.252 0.056 PB L2
ENSG00000162384 CZIB -31367 sc-eQTL 3.77e-02 -0.511 0.243 0.056 PB L2
ENSG00000162385 MAGOH -49251 sc-eQTL 8.12e-01 0.0546 0.229 0.056 PB L2
ENSG00000182183 SHISAL2A 556099 sc-eQTL 3.46e-01 -0.198 0.209 0.056 PB L2
ENSG00000230138 LINC02812 -178978 sc-eQTL 8.48e-01 0.0353 0.184 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081870 HSPB11 -756662 eQTL 0.0243 0.0788 0.0349 0.00142 0.0 0.0594
ENSG00000085840 ORC1 784844 eQTL 0.00406 0.0906 0.0315 0.00313 0.00105 0.0594
ENSG00000116157 GPX7 586896 eQTL 0.0494 0.0998 0.0507 0.0 0.0 0.0594
ENSG00000157193 LRP8 -138803 eQTL 0.00114 0.135 0.0414 0.00233 0.0 0.0594
ENSG00000174348 PODN 127215 eQTL 0.0124 0.0967 0.0386 0.0 0.0 0.0594

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081870 HSPB11 -756662 3.27e-07 3.12e-07 9.49e-08 2.79e-07 9.21e-08 9.91e-08 1.67e-07 5.2e-08 1.59e-07 4.94e-08 1.63e-07 1.15e-07 1.71e-07 7.95e-08 5.36e-08 7.5e-08 4.18e-08 2.15e-07 6.92e-08 4.23e-08 1.22e-07 1.31e-07 1.44e-07 2.95e-08 1.5e-07 1.21e-07 1.13e-07 1.06e-07 1.16e-07 1.07e-07 1.21e-07 3.89e-08 3.56e-08 9.3e-08 3.02e-08 3.24e-08 4.06e-08 9.3e-08 6.56e-08 3.8e-08 4.68e-08 1.46e-07 3.08e-08 1.82e-08 5.19e-08 1.71e-08 1.23e-07 4.14e-09 5.04e-08
ENSG00000116171 \N 261991 3e-06 4.19e-06 6.66e-07 1.74e-06 3.36e-07 5.98e-07 1.41e-06 3.51e-07 1.72e-06 4.66e-07 2.06e-06 1.18e-06 2.45e-06 3.34e-07 5.38e-07 9.36e-07 9.22e-07 1.57e-06 5.81e-07 6.52e-07 6.24e-07 1.92e-06 1.11e-06 6.34e-07 2.23e-06 7.54e-07 9.55e-07 8.53e-07 1.61e-06 1.23e-06 7.67e-07 2.38e-07 2.51e-07 6.67e-07 5.87e-07 5.24e-07 7.02e-07 2.71e-07 2.18e-07 1.16e-07 8.55e-08 1.65e-06 5.79e-07 5.61e-09 1.67e-07 2.14e-07 1.93e-07 7.28e-08 8.09e-08
ENSG00000157193 LRP8 -138803 7.96e-06 1.24e-05 1.33e-06 3.81e-06 1.32e-06 1.61e-06 6.83e-06 9.23e-07 4.84e-06 2.22e-06 5.75e-06 3.25e-06 7.25e-06 1.97e-06 1.66e-06 4.06e-06 4.08e-06 3.73e-06 1.47e-06 1.2e-06 2.61e-06 5.42e-06 4.48e-06 1.55e-06 7.21e-06 2.21e-06 2.55e-06 1.75e-06 4.84e-06 3.77e-06 2.8e-06 4.62e-07 7.79e-07 1.73e-06 1.97e-06 9e-07 1.24e-06 4.42e-07 1.06e-06 3.63e-07 2.74e-07 5.65e-06 1.14e-06 1.99e-07 3.74e-07 6.92e-07 8.55e-07 2.02e-07 2.87e-07
ENSG00000226147 \N 194541 4.78e-06 7.92e-06 6.41e-07 2.43e-06 4.59e-07 7.88e-07 2.48e-06 6.09e-07 2.68e-06 8.16e-07 2.56e-06 1.86e-06 3.54e-06 1.4e-06 1.45e-06 1.96e-06 1.74e-06 2.87e-06 1.57e-06 1.16e-06 1.99e-06 3.47e-06 2.74e-06 1.01e-06 3.74e-06 1.07e-06 1.34e-06 1.73e-06 2.69e-06 1.63e-06 1.94e-06 3.98e-07 6e-07 1.14e-06 9.26e-07 9.87e-07 9.39e-07 3.86e-07 6.21e-07 2.13e-07 2.83e-07 3.31e-06 4.01e-07 6.48e-08 3.82e-07 3.24e-07 4.08e-07 1.16e-07 3e-07
ENSG00000280378 \N -845613 3.02e-07 2.3e-07 7.72e-08 2.53e-07 8.83e-08 1e-07 1.53e-07 5.33e-08 1.47e-07 4.57e-08 1.54e-07 9.19e-08 1.52e-07 7.37e-08 5.98e-08 7.53e-08 4.09e-08 1.72e-07 6.07e-08 4.45e-08 1.26e-07 1.24e-07 1.39e-07 3.68e-08 1.4e-07 1.14e-07 1.07e-07 9.74e-08 1.08e-07 1.11e-07 1.07e-07 3.98e-08 3.28e-08 9.76e-08 4.92e-08 2.74e-08 5.74e-08 9.22e-08 7.47e-08 3.98e-08 4.18e-08 1.33e-07 4.7e-08 2.76e-08 5.59e-08 1.92e-08 1.26e-07 4.26e-09 4.77e-08