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Genes within 1Mb (chr1:54976778:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116133 DHCR24 89583 sc-eQTL 7.80e-02 0.295 0.166 0.052 DC L1
ENSG00000116205 TCEANC2 923194 sc-eQTL 9.29e-01 0.0167 0.188 0.052 DC L1
ENSG00000116209 TMEM59 923274 sc-eQTL 5.57e-01 -0.0867 0.147 0.052 DC L1
ENSG00000116221 MRPL37 792737 sc-eQTL 5.40e-01 -0.122 0.198 0.052 DC L1
ENSG00000157216 SSBP3 563299 sc-eQTL 5.91e-01 -0.095 0.177 0.052 DC L1
ENSG00000162390 ACOT11 434521 sc-eQTL 5.74e-01 0.0956 0.17 0.052 DC L1
ENSG00000162402 USP24 -238586 sc-eQTL 1.96e-01 -0.133 0.102 0.052 DC L1
ENSG00000215883 CYB5RL 776742 sc-eQTL 4.54e-01 -0.139 0.185 0.052 DC L1
ENSG00000243725 TTC4 260917 sc-eQTL 1.81e-01 -0.266 0.199 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 175455 sc-eQTL 5.77e-01 -0.0897 0.161 0.051 B_Activated L2
ENSG00000116133 DHCR24 89583 sc-eQTL 4.07e-01 -0.157 0.189 0.051 B_Activated L2
ENSG00000116205 TCEANC2 923194 sc-eQTL 1.05e-01 0.328 0.201 0.051 B_Activated L2
ENSG00000116209 TMEM59 923274 sc-eQTL 2.73e-01 0.236 0.215 0.051 B_Activated L2
ENSG00000116221 MRPL37 792737 sc-eQTL 4.14e-01 -0.19 0.232 0.051 B_Activated L2
ENSG00000157216 SSBP3 563299 sc-eQTL 5.03e-01 -0.141 0.21 0.051 B_Activated L2
ENSG00000162402 USP24 -238586 sc-eQTL 1.94e-01 -0.267 0.205 0.051 B_Activated L2
ENSG00000215883 CYB5RL 776742 sc-eQTL 3.86e-01 0.158 0.181 0.051 B_Activated L2
ENSG00000243725 TTC4 260917 sc-eQTL 8.75e-02 -0.336 0.195 0.051 B_Activated L2
ENSG00000006555 TTC22 175455 sc-eQTL 6.10e-01 0.105 0.205 0.053 NK_HLA L2
ENSG00000116133 DHCR24 89583 sc-eQTL 4.56e-01 -0.149 0.2 0.053 NK_HLA L2
ENSG00000116205 TCEANC2 923194 sc-eQTL 3.52e-01 0.18 0.193 0.053 NK_HLA L2
ENSG00000116209 TMEM59 923274 sc-eQTL 7.60e-01 0.0588 0.192 0.053 NK_HLA L2
ENSG00000116221 MRPL37 792737 sc-eQTL 1.85e-01 0.28 0.21 0.053 NK_HLA L2
ENSG00000157216 SSBP3 563299 sc-eQTL 9.94e-01 0.0013 0.172 0.053 NK_HLA L2
ENSG00000162398 LEXM 170715 sc-eQTL 6.81e-01 -0.0799 0.194 0.053 NK_HLA L2
ENSG00000162402 USP24 -238586 sc-eQTL 1.43e-02 0.347 0.141 0.053 NK_HLA L2
ENSG00000243725 TTC4 260917 sc-eQTL 8.80e-01 0.0322 0.213 0.053 NK_HLA L2
ENSG00000116133 DHCR24 89583 sc-eQTL 2.84e-03 0.485 0.16 0.054 cDC L2
ENSG00000116205 TCEANC2 923194 sc-eQTL 8.47e-01 0.0374 0.194 0.054 cDC L2
ENSG00000116209 TMEM59 923274 sc-eQTL 8.60e-01 -0.0291 0.165 0.054 cDC L2
ENSG00000116221 MRPL37 792737 sc-eQTL 8.59e-01 -0.0376 0.211 0.054 cDC L2
ENSG00000157216 SSBP3 563299 sc-eQTL 7.53e-01 0.0612 0.194 0.054 cDC L2
ENSG00000162390 ACOT11 434521 sc-eQTL 3.98e-01 0.153 0.18 0.054 cDC L2
ENSG00000162402 USP24 -238586 sc-eQTL 1.51e-01 0.29 0.201 0.054 cDC L2
ENSG00000215883 CYB5RL 776742 sc-eQTL 9.23e-01 -0.0169 0.174 0.054 cDC L2
ENSG00000243725 TTC4 260917 sc-eQTL 7.67e-01 -0.0615 0.208 0.054 cDC L2
ENSG00000116133 DHCR24 89583 sc-eQTL 3.90e-01 -0.13 0.152 0.051 intMono L2
ENSG00000116205 TCEANC2 923194 sc-eQTL 4.29e-01 -0.15 0.189 0.051 intMono L2
ENSG00000116209 TMEM59 923274 sc-eQTL 4.89e-01 -0.0962 0.139 0.051 intMono L2
ENSG00000116221 MRPL37 792737 sc-eQTL 5.30e-01 -0.133 0.212 0.051 intMono L2
ENSG00000157216 SSBP3 563299 sc-eQTL 8.50e-01 -0.0411 0.217 0.051 intMono L2
ENSG00000162402 USP24 -238586 sc-eQTL 5.28e-01 -0.122 0.193 0.051 intMono L2
ENSG00000243725 TTC4 260917 sc-eQTL 1.94e-01 0.267 0.205 0.051 intMono L2
ENSG00000116133 DHCR24 89583 sc-eQTL 2.65e-01 0.165 0.148 0.052 ncMono L2
ENSG00000116205 TCEANC2 923194 sc-eQTL 9.67e-01 -0.00767 0.185 0.052 ncMono L2
ENSG00000116209 TMEM59 923274 sc-eQTL 4.21e-01 0.12 0.148 0.052 ncMono L2
ENSG00000116221 MRPL37 792737 sc-eQTL 7.70e-01 0.0561 0.191 0.052 ncMono L2
ENSG00000157216 SSBP3 563299 sc-eQTL 2.90e-01 -0.221 0.209 0.052 ncMono L2
ENSG00000162402 USP24 -238586 sc-eQTL 4.87e-01 0.116 0.167 0.052 ncMono L2
ENSG00000243725 TTC4 260917 sc-eQTL 8.33e-01 -0.0418 0.198 0.052 ncMono L2
ENSG00000116133 DHCR24 89583 sc-eQTL 3.56e-01 -0.17 0.184 0.051 pDC L2
ENSG00000116205 TCEANC2 923194 sc-eQTL 8.15e-01 0.0517 0.221 0.051 pDC L2
ENSG00000116209 TMEM59 923274 sc-eQTL 2.47e-01 0.204 0.176 0.051 pDC L2
ENSG00000116221 MRPL37 792737 sc-eQTL 7.04e-01 -0.0892 0.234 0.051 pDC L2
ENSG00000157216 SSBP3 563299 sc-eQTL 2.69e-01 -0.23 0.207 0.051 pDC L2
ENSG00000162390 ACOT11 434521 sc-eQTL 5.92e-01 0.047 0.0875 0.051 pDC L2
ENSG00000162402 USP24 -238586 sc-eQTL 1.63e-03 -0.459 0.143 0.051 pDC L2
ENSG00000215883 CYB5RL 776742 sc-eQTL 6.86e-01 0.0819 0.202 0.051 pDC L2
ENSG00000243725 TTC4 260917 sc-eQTL 8.12e-01 -0.0557 0.233 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000006555 TTC22 175455 eQTL 0.00497 0.101 0.036 0.0 0.0 0.0442
ENSG00000116133 DHCR24 89583 eQTL 0.0139 -0.158 0.064 0.0 0.0 0.0442

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184313 \N 335024 1.26e-06 8.78e-07 1.54e-07 3.38e-07 1.19e-07 3.36e-07 7.99e-07 2.66e-07 8.32e-07 2.69e-07 1.09e-06 5.39e-07 1.3e-06 2.1e-07 3.9e-07 4.14e-07 5.92e-07 4.4e-07 3.51e-07 2.86e-07 2.53e-07 5.66e-07 5.77e-07 3.24e-07 1.57e-06 2.64e-07 4.91e-07 4.71e-07 6.84e-07 8.59e-07 4.47e-07 4.53e-08 1.04e-07 2.98e-07 3.27e-07 2.89e-07 2.46e-07 1.42e-07 8.24e-08 1.82e-08 1.44e-07 1.05e-06 5.09e-08 2.65e-08 1.95e-07 4.43e-08 1.62e-07 8.82e-08 5.4e-08