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Genes within 1Mb (chr1:53836650:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -964673 sc-eQTL 8.48e-01 -0.0302 0.157 0.051 B_Activated L2
ENSG00000058799 YIPF1 -53148 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -1813 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -109279 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 909374 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -216934 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -216854 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -109435 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -347391 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 909438 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 639858 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 508181 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -576829 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 616016 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 598132 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -363386 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 468405 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -879211 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000006555 TTC22 -964673 sc-eQTL 9.84e-01 -0.00381 0.193 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -53148 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -1813 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -109279 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 909374 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -216934 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -216854 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -109435 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -347391 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 909438 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 639858 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 508181 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -576829 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 616016 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 598132 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -879211 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -964673 sc-eQTL 5.55e-01 -0.131 0.221 0.052 PB L2
ENSG00000058799 YIPF1 -53148 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -1813 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -109279 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 909374 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -216934 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -216854 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -109435 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -347391 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 909438 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 639858 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 508181 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -576829 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 616016 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 598132 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -363386 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 468405 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -879211 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -53148 eQTL 1.82e-06 0.0778 0.0162 0.00291 0.00765 0.0574
ENSG00000116212 LRRC42 -109435 eQTL 0.0193 0.102 0.0435 0.00106 0.0 0.0574
ENSG00000157184 CPT2 639858 eQTL 0.0198 -0.101 0.0434 0.0 0.0 0.0574

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -53148 1.51e-05 2.15e-05 2.86e-06 9.42e-06 2.57e-06 6.96e-06 2.17e-05 3.41e-06 1.67e-05 7.28e-06 2.11e-05 8.35e-06 2.88e-05 7.53e-06 4.71e-06 1.02e-05 1e-05 1.41e-05 4.36e-06 3.53e-06 7.77e-06 1.47e-05 1.69e-05 4.52e-06 3.02e-05 5.34e-06 7.95e-06 6.3e-06 1.62e-05 1.38e-05 1.23e-05 1.27e-06 1.44e-06 3.8e-06 7.21e-06 3.63e-06 1.77e-06 2.51e-06 2.7e-06 1.38e-06 9.75e-07 2.15e-05 2.7e-06 3.05e-07 9.99e-07 2.34e-06 2.4e-06 9.83e-07 5.37e-07
ENSG00000116171 \N 909374 2.66e-07 1.27e-07 5.03e-08 1.86e-07 8.83e-08 9.71e-08 1.41e-07 5.33e-08 1.44e-07 4.4e-08 1.56e-07 8.36e-08 1.33e-07 6.56e-08 5.91e-08 7.17e-08 4.17e-08 1.18e-07 5.82e-08 4.03e-08 1.19e-07 1.26e-07 1.26e-07 4.16e-08 1.32e-07 1.14e-07 1.11e-07 9.36e-08 1.02e-07 1.11e-07 9.64e-08 3.7e-08 3.16e-08 8.68e-08 8.21e-08 2.99e-08 4.43e-08 8.71e-08 6.37e-08 3.55e-08 4.63e-08 1.31e-07 5.2e-08 2.65e-08 5.75e-08 1.66e-08 1.23e-07 2.05e-09 4.72e-08
ENSG00000116212 LRRC42 -109435 7.72e-06 1.18e-05 1.39e-06 4.07e-06 1.73e-06 3.11e-06 9.59e-06 1.59e-06 7.93e-06 3.72e-06 1.04e-05 4.97e-06 1.22e-05 3.95e-06 2e-06 6.54e-06 5.99e-06 5.77e-06 2.66e-06 1.98e-06 4.72e-06 7.66e-06 6.79e-06 1.96e-06 1.3e-05 3.55e-06 4.22e-06 2.81e-06 7.11e-06 7.59e-06 5.07e-06 9.59e-07 1.05e-06 2.26e-06 3.13e-06 2.11e-06 1.71e-06 1.84e-06 1.3e-06 7.13e-07 6.37e-07 1.01e-05 1.63e-06 2.52e-07 5.77e-07 8.79e-07 9.12e-07 6.83e-07 5.85e-07