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Genes within 1Mb (chr1:53835785:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -965538 sc-eQTL 8.48e-01 -0.0302 0.157 0.051 B_Activated L2
ENSG00000058799 YIPF1 -54013 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -2678 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -110144 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 908509 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -217799 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -217719 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -110300 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -348256 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 908573 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 638993 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 507316 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -577694 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 615151 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 597267 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -364251 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 467540 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -880076 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000006555 TTC22 -965538 sc-eQTL 9.84e-01 -0.00381 0.193 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -54013 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -2678 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -110144 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 908509 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -217799 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -217719 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -110300 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -348256 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 908573 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 638993 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 507316 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -577694 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 615151 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 597267 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -880076 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -965538 sc-eQTL 5.55e-01 -0.131 0.221 0.052 PB L2
ENSG00000058799 YIPF1 -54013 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -2678 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -110144 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 908509 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -217799 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -217719 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -110300 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -348256 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 908573 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 638993 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 507316 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -577694 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 615151 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 597267 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -364251 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 467540 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -880076 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -54013 eQTL 1.81e-06 0.0778 0.0162 0.00292 0.00772 0.0574
ENSG00000116212 LRRC42 -110300 eQTL 0.0194 0.102 0.0435 0.00106 0.0 0.0574
ENSG00000157184 CPT2 638993 eQTL 0.0199 -0.101 0.0434 0.0 0.0 0.0574

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -54013 2.47e-05 2.79e-05 6.39e-06 1.35e-05 4.75e-06 1.01e-05 3.35e-05 3.51e-06 2.41e-05 1.2e-05 2.88e-05 1.39e-05 3.83e-05 1.22e-05 6.39e-06 1.37e-05 1.63e-05 2.01e-05 6.96e-06 5.19e-06 1.15e-05 2.55e-05 2.47e-05 7.18e-06 4.05e-05 6.27e-06 1.09e-05 9.9e-06 2.65e-05 2.41e-05 1.47e-05 1.63e-06 1.81e-06 6.29e-06 1.04e-05 4.81e-06 2.76e-06 2.99e-06 3.63e-06 2.79e-06 1.63e-06 3.12e-05 3.46e-06 4.31e-07 2.34e-06 3.2e-06 3.63e-06 1.4e-06 1.24e-06
ENSG00000116171 \N 908509 1.26e-06 9.09e-07 2.51e-07 1.25e-06 2.71e-07 4.82e-07 1.13e-06 2.47e-07 9.42e-07 3.11e-07 1.84e-06 5.51e-07 2.02e-06 2.55e-07 4.61e-07 3.57e-07 7.93e-07 5.27e-07 4.95e-07 6.07e-07 2.97e-07 9.64e-07 5.49e-07 1.76e-07 1.74e-06 2.7e-07 7.06e-07 6.23e-07 9.15e-07 1.28e-06 5.3e-07 3.75e-08 5.77e-08 6.99e-07 5.64e-07 4.34e-07 4.74e-07 1.21e-07 3.6e-07 3.24e-07 1.95e-07 1.56e-06 2.88e-08 5.27e-07 1.99e-07 7.77e-08 1.32e-07 1.2e-08 4.83e-08
ENSG00000116212 LRRC42 -110300 1.11e-05 1.51e-05 4.42e-06 1.17e-05 2.6e-06 6.12e-06 1.97e-05 2.14e-06 1.49e-05 7.58e-06 1.85e-05 7.38e-06 2.46e-05 7.27e-06 5.24e-06 8.06e-06 1.22e-05 1.18e-05 3.64e-06 3.12e-06 7.66e-06 1.26e-05 1.36e-05 4.2e-06 2.91e-05 5.25e-06 7.6e-06 7.29e-06 1.61e-05 1.7e-05 9.4e-06 1.01e-06 1.19e-06 5.15e-06 8.54e-06 4.06e-06 1.85e-06 2.84e-06 2.22e-06 2.01e-06 1.48e-06 2.17e-05 2.67e-06 5.27e-07 1.99e-06 2.84e-06 2.32e-06 1.27e-06 4.77e-07