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Genes within 1Mb (chr1:53829466:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -971857 sc-eQTL 8.48e-01 -0.0302 0.157 0.051 B_Activated L2
ENSG00000058799 YIPF1 -60332 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -8997 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -116463 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 902190 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -224118 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -224038 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -116619 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -354575 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 902254 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 632674 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 500997 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -584013 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 608832 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 590948 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -370570 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 461221 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -886395 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000006555 TTC22 -971857 sc-eQTL 9.84e-01 -0.00381 0.193 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -60332 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -8997 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -116463 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 902190 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -224118 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -224038 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -116619 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -354575 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 902254 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 632674 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 500997 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -584013 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 608832 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 590948 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -886395 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -971857 sc-eQTL 5.55e-01 -0.131 0.221 0.052 PB L2
ENSG00000058799 YIPF1 -60332 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -8997 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -116463 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 902190 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -224118 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -224038 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -116619 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -354575 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 902254 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 632674 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 500997 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -584013 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 608832 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 590948 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -370570 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 461221 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -886395 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -60332 eQTL 1.53e-06 0.0788 0.0163 0.00315 0.00892 0.0564
ENSG00000116212 LRRC42 -116619 eQTL 0.0238 0.099 0.0438 0.0 0.0 0.0564
ENSG00000157184 CPT2 632674 eQTL 0.0158 -0.106 0.0436 0.0 0.0 0.0564
ENSG00000198711 SSBP3-AS1 -406974 eQTL 6.17e-02 0.0783 0.0418 0.00112 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -60332 7.82e-06 9.38e-06 1.35e-06 4.82e-06 2.44e-06 3.82e-06 1e-05 2.03e-06 8.59e-06 5.11e-06 1.15e-05 5.25e-06 1.31e-05 3.88e-06 2.42e-06 6.54e-06 3.74e-06 6.71e-06 2.58e-06 2.77e-06 4.98e-06 8.59e-06 7.22e-06 3.29e-06 1.31e-05 3.85e-06 4.77e-06 3.74e-06 9.27e-06 7.9e-06 5.02e-06 9.97e-07 1.27e-06 3.06e-06 3.69e-06 2.53e-06 1.71e-06 1.97e-06 1.89e-06 9.95e-07 9.26e-07 1.14e-05 1.27e-06 1.76e-07 8.09e-07 1.77e-06 1.4e-06 7.32e-07 4.64e-07
ENSG00000116171 \N 902190 2.69e-07 1.25e-07 3.88e-08 1.84e-07 9.21e-08 1e-07 1.49e-07 5.4e-08 1.44e-07 4.94e-08 1.62e-07 8.59e-08 1.41e-07 6.56e-08 5.99e-08 7.3e-08 3.87e-08 1.26e-07 5.39e-08 4.45e-08 1.13e-07 1.28e-07 1.39e-07 3.49e-08 1.37e-07 1.14e-07 1.06e-07 9.57e-08 1.09e-07 1.07e-07 9.64e-08 3.87e-08 3.56e-08 8.55e-08 8.38e-08 3.95e-08 4.95e-08 9.23e-08 6.54e-08 3.37e-08 4.88e-08 1.33e-07 5.24e-08 1.58e-08 5.19e-08 1.83e-08 1.21e-07 3.83e-09 4.9e-08
ENSG00000116212 LRRC42 -116619 4.18e-06 4.74e-06 8.15e-07 2.68e-06 1.62e-06 1.49e-06 4.31e-06 9.99e-07 4.98e-06 2.39e-06 5.21e-06 3.31e-06 7.38e-06 2.45e-06 1.49e-06 3.69e-06 2e-06 3.55e-06 1.45e-06 1.02e-06 3.04e-06 4.85e-06 4.13e-06 1.44e-06 5.99e-06 2e-06 2.53e-06 1.85e-06 4.47e-06 4.23e-06 2.75e-06 5.25e-07 5.47e-07 1.52e-06 2.07e-06 9.71e-07 9.73e-07 4.58e-07 9.46e-07 4.29e-07 6.6e-07 5.7e-06 4.02e-07 1.62e-07 5.77e-07 9.32e-07 9.74e-07 4.28e-07 3.29e-07