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Genes within 1Mb (chr1:53829093:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -972230 sc-eQTL 8.48e-01 -0.0302 0.157 0.051 B_Activated L2
ENSG00000058799 YIPF1 -60705 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -9370 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -116836 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 901817 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -224491 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -224411 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -116992 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -354948 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 901881 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 632301 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 500624 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -584386 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 608459 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 590575 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -370943 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 460848 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -886768 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000006555 TTC22 -972230 sc-eQTL 9.84e-01 -0.00381 0.193 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -60705 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -9370 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -116836 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 901817 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -224491 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -224411 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -116992 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -354948 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 901881 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 632301 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 500624 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -584386 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 608459 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 590575 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -886768 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -972230 sc-eQTL 5.55e-01 -0.131 0.221 0.052 PB L2
ENSG00000058799 YIPF1 -60705 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -9370 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -116836 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 901817 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -224491 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -224411 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -116992 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -354948 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 901881 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 632301 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 500624 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -584386 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 608459 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 590575 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -370943 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 460848 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -886768 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -60705 eQTL 1.53e-06 0.0788 0.0163 0.00315 0.00899 0.0564
ENSG00000116212 LRRC42 -116992 eQTL 0.0238 0.099 0.0438 0.0 0.0 0.0564
ENSG00000157184 CPT2 632301 eQTL 0.0158 -0.106 0.0436 0.0 0.0 0.0564
ENSG00000198711 SSBP3-AS1 -407347 eQTL 6.17e-02 0.0783 0.0418 0.00112 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -60705 9.28e-06 9.48e-06 1.63e-06 5.5e-06 2.38e-06 4.24e-06 1.06e-05 2.12e-06 9.59e-06 5.39e-06 1.23e-05 5.55e-06 1.48e-05 3.74e-06 2.92e-06 6.45e-06 4.73e-06 7.87e-06 3.09e-06 2.99e-06 5.94e-06 9.61e-06 8.08e-06 3.36e-06 1.38e-05 4.4e-06 5.27e-06 4.45e-06 1.1e-05 9.19e-06 5.45e-06 9.78e-07 1.22e-06 3.68e-06 4.62e-06 2.78e-06 1.78e-06 2.02e-06 2.08e-06 1.3e-06 1.25e-06 1.2e-05 1.49e-06 2.69e-07 1.02e-06 1.73e-06 1.8e-06 6.27e-07 5.35e-07
ENSG00000116171 \N 901817 2.91e-07 1.35e-07 6.26e-08 2.01e-07 9.82e-08 8.21e-08 1.73e-07 5.62e-08 1.5e-07 6.75e-08 1.67e-07 1.19e-07 1.71e-07 7.64e-08 5.94e-08 7.97e-08 4.31e-08 1.56e-07 7.12e-08 5.2e-08 1.25e-07 1.31e-07 1.5e-07 3.22e-08 1.65e-07 1.23e-07 1.17e-07 1.06e-07 1.24e-07 1.03e-07 1.08e-07 3.84e-08 3.68e-08 8.89e-08 3.07e-08 3.22e-08 5.7e-08 8.89e-08 6.76e-08 5.13e-08 5.81e-08 1.46e-07 5.39e-08 1.22e-08 3.29e-08 1.65e-08 8.81e-08 1.95e-09 4.82e-08
ENSG00000116212 LRRC42 -116992 5.22e-06 5.09e-06 6.57e-07 3.29e-06 1.66e-06 1.58e-06 5.92e-06 1.22e-06 5e-06 2.76e-06 6.38e-06 3.17e-06 7.82e-06 1.95e-06 1.04e-06 4e-06 2e-06 3.91e-06 1.58e-06 1.77e-06 2.8e-06 5.51e-06 4.6e-06 1.92e-06 7.71e-06 2.08e-06 2.65e-06 1.74e-06 4.94e-06 5.02e-06 2.8e-06 4.97e-07 8.41e-07 2.34e-06 1.96e-06 1.33e-06 1.04e-06 5.44e-07 1.25e-06 8.46e-07 8.99e-07 5.79e-06 5.26e-07 1.54e-07 7.85e-07 1.08e-06 1e-06 7.24e-07 6.19e-07