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Genes within 1Mb (chr1:53818878:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -982445 sc-eQTL 8.48e-01 -0.0302 0.157 0.051 B_Activated L2
ENSG00000058799 YIPF1 -70920 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -19585 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -127051 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 891602 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -234706 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -234626 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -127207 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -365163 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 891666 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 622086 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 490409 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -594601 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 598244 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 580360 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -381158 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 450633 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -896983 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000006555 TTC22 -982445 sc-eQTL 9.84e-01 -0.00381 0.193 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -70920 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -19585 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -127051 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 891602 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -234706 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -234626 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -127207 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -365163 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 891666 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 622086 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 490409 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -594601 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 598244 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 580360 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -896983 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -982445 sc-eQTL 5.55e-01 -0.131 0.221 0.052 PB L2
ENSG00000058799 YIPF1 -70920 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -19585 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -127051 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 891602 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -234706 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -234626 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -127207 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -365163 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 891666 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 622086 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 490409 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -594601 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 598244 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 580360 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -381158 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 450633 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -896983 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -70920 eQTL 1.53e-06 0.0788 0.0163 0.00315 0.00892 0.0564
ENSG00000116212 LRRC42 -127207 eQTL 0.0238 0.099 0.0438 0.0 0.0 0.0564
ENSG00000157184 CPT2 622086 eQTL 0.0158 -0.106 0.0436 0.0 0.0 0.0564
ENSG00000198711 SSBP3-AS1 -417562 eQTL 6.17e-02 0.0783 0.0418 0.00112 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -70920 1.72e-05 2.36e-05 3.79e-06 1.2e-05 3.7e-06 8.67e-06 2.6e-05 3.73e-06 2.01e-05 9.45e-06 2.58e-05 9.68e-06 3.18e-05 7.21e-06 5.23e-06 1.14e-05 1.08e-05 1.7e-05 4.95e-06 5.26e-06 9.65e-06 1.98e-05 1.84e-05 5.66e-06 2.8e-05 6.35e-06 8.97e-06 9.23e-06 2.04e-05 1.52e-05 1.29e-05 1.58e-06 2.25e-06 4.39e-06 8.5e-06 4.4e-06 2.37e-06 2.84e-06 3.56e-06 2.86e-06 1.67e-06 2.33e-05 2.92e-06 4.29e-07 2.01e-06 2.67e-06 3.3e-06 1.42e-06 1.46e-06
ENSG00000116171 \N 891602 2.56e-07 1.11e-07 3.28e-08 1.7e-07 1.02e-07 9.13e-08 1.36e-07 5.24e-08 1.32e-07 4.23e-08 1.61e-07 7.6e-08 1.2e-07 6.1e-08 4.89e-08 7.76e-08 5.12e-08 1.06e-07 5.2e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 5.01e-08 1.33e-07 1.09e-07 1.11e-07 8.49e-08 1.05e-07 1.1e-07 9.5e-08 3.59e-08 2.74e-08 8e-08 9.69e-08 4.19e-08 5.54e-08 8.78e-08 8.14e-08 3.69e-08 3.46e-08 1.42e-07 4.36e-08 7.43e-09 1.09e-07 1.8e-08 1.44e-07 4.7e-09 4.85e-08
ENSG00000116212 LRRC42 -127207 4.83e-06 7.81e-06 1.3e-06 3.92e-06 1.46e-06 1.57e-06 7.69e-06 1.24e-06 4.66e-06 2.82e-06 7.96e-06 2.79e-06 7.66e-06 1.97e-06 1.04e-06 4.32e-06 2.24e-06 3.78e-06 2.29e-06 2.27e-06 4.57e-06 5.98e-06 4.62e-06 2.04e-06 7.25e-06 2.84e-06 2.51e-06 2.51e-06 4.56e-06 4.47e-06 2.65e-06 9.81e-07 9.28e-07 1.87e-06 1.98e-06 1.39e-06 1.47e-06 1.14e-06 1.24e-06 1.03e-06 8.61e-07 5.67e-06 1.4e-06 4.33e-07 6.85e-07 1.1e-06 9.03e-07 6.72e-07 4.71e-07