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Genes within 1Mb (chr1:53768907:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -120891 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -69556 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -177022 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 841631 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -284677 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -284597 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -177178 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -415134 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 841695 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 572115 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 440438 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -644572 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 548273 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 530389 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -431129 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 400662 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -946954 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000058799 YIPF1 -120891 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -69556 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -177022 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 841631 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -284677 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -284597 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -177178 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -415134 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 841695 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 572115 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 440438 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -644572 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 548273 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 530389 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -946954 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -120891 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -69556 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -177022 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 841631 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -284677 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -284597 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -177178 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -415134 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 841695 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 572115 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 440438 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -644572 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 548273 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 530389 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -431129 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 400662 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -946954 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -120891 eQTL 2.32e-06 0.08 0.0168 0.00174 0.00583 0.053
ENSG00000116212 LRRC42 -177178 eQTL 0.0432 0.0916 0.0452 0.0 0.0 0.053
ENSG00000157184 CPT2 572115 eQTL 0.0163 -0.108 0.0451 0.0 0.0 0.053
ENSG00000162383 SLC1A7 626275 eQTL 0.0455 -0.124 0.0618 0.0 0.0 0.053
ENSG00000198711 SSBP3-AS1 -467533 eQTL 2.06e-02 0.1 0.0432 0.00228 0.0 0.053

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -120891 4.46e-06 4.88e-06 7.29e-07 2.94e-06 1.63e-06 1.71e-06 4.29e-06 1.17e-06 5.13e-06 2.5e-06 5.32e-06 3.18e-06 7.06e-06 2.33e-06 1.33e-06 3.69e-06 1.96e-06 3.71e-06 1.55e-06 1.16e-06 2.88e-06 4.9e-06 4.61e-06 1.62e-06 6.24e-06 2.01e-06 2.35e-06 1.83e-06 4.46e-06 4.29e-06 2.73e-06 4.15e-07 5.2e-07 1.61e-06 2.02e-06 1.17e-06 1.08e-06 4.56e-07 8.6e-07 5.32e-07 7.69e-07 5.64e-06 3.83e-07 1.62e-07 7.72e-07 1.32e-06 1.16e-06 6.9e-07 4.98e-07
ENSG00000116171 \N 841631 2.76e-07 1.27e-07 5.03e-08 1.82e-07 1.01e-07 9.05e-08 1.61e-07 5.75e-08 1.45e-07 6.08e-08 1.55e-07 1.05e-07 1.52e-07 7.37e-08 6.18e-08 7.5e-08 4.24e-08 1.4e-07 6.07e-08 4.78e-08 1.26e-07 1.26e-07 1.44e-07 2.91e-08 1.55e-07 1.22e-07 1.13e-07 9.74e-08 1.2e-07 1e-07 9.92e-08 2.99e-08 3.96e-08 8.56e-08 4.92e-08 3.14e-08 5.59e-08 9.17e-08 6.86e-08 3.86e-08 4.69e-08 1.36e-07 5.08e-08 1.38e-08 4.25e-08 1.89e-08 1.2e-07 1.9e-09 5e-08