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Genes within 1Mb (chr1:53762117:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -127681 sc-eQTL 5.22e-01 0.136 0.212 0.051 B_Activated L2
ENSG00000058804 NDC1 -76346 sc-eQTL 5.38e-01 0.123 0.2 0.051 B_Activated L2
ENSG00000081870 HSPB11 -183812 sc-eQTL 4.52e-01 0.162 0.216 0.051 B_Activated L2
ENSG00000116171 SCP2 834841 sc-eQTL 1.37e-02 -0.501 0.201 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -291467 sc-eQTL 2.44e-01 0.23 0.197 0.051 B_Activated L2
ENSG00000116209 TMEM59 -291387 sc-eQTL 1.73e-01 -0.286 0.209 0.051 B_Activated L2
ENSG00000116212 LRRC42 -183968 sc-eQTL 1.63e-01 0.284 0.203 0.051 B_Activated L2
ENSG00000116221 MRPL37 -421924 sc-eQTL 9.05e-01 -0.0271 0.227 0.051 B_Activated L2
ENSG00000121310 ECHDC2 834905 sc-eQTL 9.05e-01 0.0276 0.23 0.051 B_Activated L2
ENSG00000157184 CPT2 565325 sc-eQTL 3.23e-01 0.195 0.197 0.051 B_Activated L2
ENSG00000157193 LRP8 433648 sc-eQTL 3.27e-01 0.187 0.191 0.051 B_Activated L2
ENSG00000157216 SSBP3 -651362 sc-eQTL 3.57e-01 0.189 0.205 0.051 B_Activated L2
ENSG00000162384 CZIB 541483 sc-eQTL 2.71e-01 -0.244 0.221 0.051 B_Activated L2
ENSG00000162385 MAGOH 523599 sc-eQTL 3.96e-02 0.472 0.228 0.051 B_Activated L2
ENSG00000215883 CYB5RL -437919 sc-eQTL 5.46e-01 -0.107 0.177 0.051 B_Activated L2
ENSG00000230138 LINC02812 393872 sc-eQTL 1.92e-01 0.252 0.192 0.051 B_Activated L2
ENSG00000243725 TTC4 -953744 sc-eQTL 8.07e-01 0.0469 0.192 0.051 B_Activated L2
ENSG00000058799 YIPF1 -127681 sc-eQTL 6.99e-01 0.0793 0.205 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -76346 sc-eQTL 7.78e-01 -0.0567 0.201 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -183812 sc-eQTL 4.76e-01 0.15 0.21 0.05 CD4_CTL L2
ENSG00000116171 SCP2 834841 sc-eQTL 5.71e-01 0.0971 0.171 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -291467 sc-eQTL 1.48e-01 -0.287 0.197 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -291387 sc-eQTL 3.88e-01 0.156 0.18 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -183968 sc-eQTL 3.47e-01 0.188 0.2 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -421924 sc-eQTL 6.46e-01 0.102 0.222 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 834905 sc-eQTL 8.80e-01 -0.0325 0.215 0.05 CD4_CTL L2
ENSG00000157184 CPT2 565325 sc-eQTL 6.68e-01 0.0868 0.202 0.05 CD4_CTL L2
ENSG00000157193 LRP8 433648 sc-eQTL 2.22e-01 0.252 0.205 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -651362 sc-eQTL 7.68e-01 -0.0403 0.136 0.05 CD4_CTL L2
ENSG00000162384 CZIB 541483 sc-eQTL 1.58e-01 0.305 0.215 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 523599 sc-eQTL 8.38e-01 -0.0403 0.197 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -953744 sc-eQTL 5.61e-01 -0.122 0.21 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -127681 sc-eQTL 5.68e-01 0.0892 0.156 0.052 PB L2
ENSG00000058804 NDC1 -76346 sc-eQTL 1.52e-01 -0.331 0.23 0.052 PB L2
ENSG00000081870 HSPB11 -183812 sc-eQTL 4.54e-01 -0.146 0.195 0.052 PB L2
ENSG00000116171 SCP2 834841 sc-eQTL 1.52e-02 -0.406 0.165 0.052 PB L2
ENSG00000116205 TCEANC2 -291467 sc-eQTL 7.58e-02 -0.422 0.236 0.052 PB L2
ENSG00000116209 TMEM59 -291387 sc-eQTL 3.17e-01 0.1 0.0995 0.052 PB L2
ENSG00000116212 LRRC42 -183968 sc-eQTL 7.87e-01 -0.0612 0.225 0.052 PB L2
ENSG00000116221 MRPL37 -421924 sc-eQTL 9.44e-01 -0.0127 0.182 0.052 PB L2
ENSG00000121310 ECHDC2 834905 sc-eQTL 9.28e-01 0.0228 0.251 0.052 PB L2
ENSG00000157184 CPT2 565325 sc-eQTL 1.17e-01 0.338 0.214 0.052 PB L2
ENSG00000157193 LRP8 433648 sc-eQTL 5.73e-01 -0.129 0.228 0.052 PB L2
ENSG00000157216 SSBP3 -651362 sc-eQTL 2.99e-01 -0.218 0.209 0.052 PB L2
ENSG00000162384 CZIB 541483 sc-eQTL 3.30e-01 0.232 0.237 0.052 PB L2
ENSG00000162385 MAGOH 523599 sc-eQTL 4.49e-01 0.167 0.22 0.052 PB L2
ENSG00000215883 CYB5RL -437919 sc-eQTL 7.05e-01 0.0936 0.247 0.052 PB L2
ENSG00000230138 LINC02812 393872 sc-eQTL 7.37e-02 -0.316 0.175 0.052 PB L2
ENSG00000243725 TTC4 -953744 sc-eQTL 3.29e-02 0.488 0.226 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -127681 eQTL 2.34e-06 0.0807 0.017 0.00168 0.00568 0.0535
ENSG00000116212 LRRC42 -183968 eQTL 0.044 0.092 0.0456 0.0 0.0 0.0535
ENSG00000157184 CPT2 565325 eQTL 0.0276 -0.1 0.0455 0.0 0.0 0.0535
ENSG00000162383 SLC1A7 619485 eQTL 0.0432 -0.126 0.0623 0.0 0.0 0.0535
ENSG00000198711 SSBP3-AS1 -474323 eQTL 1.84e-02 0.103 0.0435 0.00251 0.0 0.0535

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058799 YIPF1 -127681 4.24e-06 4.13e-06 8.72e-07 1.97e-06 1.62e-06 1.09e-06 3.02e-06 9.79e-07 4.2e-06 2.01e-06 4.1e-06 3.21e-06 6.55e-06 1.52e-06 1.37e-06 3.03e-06 1.97e-06 2.88e-06 1.45e-06 1e-06 2.63e-06 4.21e-06 3.49e-06 1.43e-06 4.9e-06 1.72e-06 2.41e-06 1.81e-06 4.42e-06 3.95e-06 1.96e-06 5.08e-07 4.91e-07 1.49e-06 1.9e-06 9.89e-07 9.75e-07 5.45e-07 9.31e-07 3.71e-07 7.14e-07 4.67e-06 3.97e-07 1.63e-07 6.07e-07 6.03e-07 9.64e-07 4.27e-07 4.54e-07
ENSG00000116171 \N 834841 2.8e-07 1.34e-07 5.64e-08 1.83e-07 9.8e-08 9.05e-08 1.67e-07 5.85e-08 1.5e-07 6.4e-08 1.63e-07 1.08e-07 1.59e-07 7.37e-08 6.25e-08 7.74e-08 4.24e-08 1.51e-07 6.75e-08 4.78e-08 1.25e-07 1.26e-07 1.5e-07 2.87e-08 1.63e-07 1.23e-07 1.18e-07 9.92e-08 1.22e-07 9.49e-08 1.06e-07 2.9e-08 3.73e-08 8.7e-08 4.84e-08 2.99e-08 5.45e-08 8.72e-08 6.86e-08 4.47e-08 5.34e-08 1.46e-07 5.22e-08 1.11e-08 3.83e-08 1.89e-08 1.2e-07 1.88e-09 4.99e-08