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Genes within 1Mb (chr1:53576977:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -312821 sc-eQTL 5.47e-01 0.116 0.192 0.05 CD4_CTL L2
ENSG00000058804 NDC1 -261486 sc-eQTL 8.09e-01 -0.0459 0.19 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 -368952 sc-eQTL 5.42e-01 -0.121 0.197 0.05 CD4_CTL L2
ENSG00000116157 GPX7 974606 sc-eQTL 1.84e-01 -0.264 0.199 0.05 CD4_CTL L2
ENSG00000116171 SCP2 649701 sc-eQTL 1.39e-02 0.394 0.159 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 -476607 sc-eQTL 9.84e-01 -0.00371 0.187 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 -476527 sc-eQTL 7.73e-01 -0.049 0.17 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 -369108 sc-eQTL 2.80e-01 -0.203 0.188 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 -607064 sc-eQTL 7.22e-01 -0.0744 0.209 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 649765 sc-eQTL 1.66e-01 0.279 0.201 0.05 CD4_CTL L2
ENSG00000157184 CPT2 380185 sc-eQTL 2.66e-01 0.212 0.19 0.05 CD4_CTL L2
ENSG00000157193 LRP8 248508 sc-eQTL 3.44e-02 0.409 0.192 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -836502 sc-eQTL 5.54e-01 -0.0761 0.128 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B 850524 sc-eQTL 4.88e-01 -0.136 0.196 0.05 CD4_CTL L2
ENSG00000162384 CZIB 356343 sc-eQTL 7.24e-01 0.0718 0.203 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 338459 sc-eQTL 6.38e-02 -0.342 0.184 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A 943809 sc-eQTL 6.55e-01 0.0796 0.178 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 -312821 sc-eQTL 3.88e-02 0.398 0.191 0.051 cDC L2
ENSG00000058804 NDC1 -261486 sc-eQTL 2.37e-01 -0.232 0.195 0.051 cDC L2
ENSG00000081870 HSPB11 -368952 sc-eQTL 4.72e-01 -0.149 0.207 0.051 cDC L2
ENSG00000116157 GPX7 974606 sc-eQTL 2.71e-01 -0.193 0.174 0.051 cDC L2
ENSG00000116171 SCP2 649701 sc-eQTL 5.79e-01 0.0953 0.171 0.051 cDC L2
ENSG00000116205 TCEANC2 -476607 sc-eQTL 3.87e-01 0.163 0.189 0.051 cDC L2
ENSG00000116209 TMEM59 -476527 sc-eQTL 3.67e-01 -0.145 0.16 0.051 cDC L2
ENSG00000116212 LRRC42 -369108 sc-eQTL 6.21e-01 0.0971 0.196 0.051 cDC L2
ENSG00000116221 MRPL37 -607064 sc-eQTL 4.78e-01 -0.146 0.205 0.051 cDC L2
ENSG00000121310 ECHDC2 649765 sc-eQTL 3.71e-01 0.178 0.199 0.051 cDC L2
ENSG00000157184 CPT2 380185 sc-eQTL 3.19e-01 0.199 0.199 0.051 cDC L2
ENSG00000157193 LRP8 248508 sc-eQTL 8.76e-01 0.0319 0.204 0.051 cDC L2
ENSG00000157216 SSBP3 -836502 sc-eQTL 2.16e-01 -0.234 0.189 0.051 cDC L2
ENSG00000162377 COA7 878630 sc-eQTL 3.55e-01 -0.182 0.196 0.051 cDC L2
ENSG00000162378 ZYG11B 850524 sc-eQTL 4.09e-01 -0.171 0.207 0.051 cDC L2
ENSG00000162384 CZIB 356343 sc-eQTL 4.74e-01 -0.134 0.186 0.051 cDC L2
ENSG00000162385 MAGOH 338459 sc-eQTL 8.00e-01 -0.0433 0.171 0.051 cDC L2
ENSG00000162390 ACOT11 -965280 sc-eQTL 7.47e-01 -0.0568 0.176 0.051 cDC L2
ENSG00000215883 CYB5RL -623059 sc-eQTL 6.24e-01 0.0831 0.169 0.051 cDC L2
ENSG00000230138 LINC02812 208732 sc-eQTL 8.65e-01 0.03 0.176 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000157193 LRP8 248907 eQTL 0.0157 0.124 0.0514 0.00143 0.0 0.0388
ENSG00000162384 CZIB 356343 eQTL 0.00154 0.113 0.0356 0.00125 0.0 0.0388
ENSG00000182183 SHISAL2A 943809 eQTL 0.0402 -0.0883 0.043 0.0 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121310 \N 649765 2.95e-07 1.35e-07 5.49e-08 1.9e-07 9.87e-08 8.45e-08 1.73e-07 5.53e-08 1.45e-07 6.08e-08 1.57e-07 1.05e-07 1.59e-07 7.37e-08 6.25e-08 7.23e-08 4.24e-08 1.44e-07 6.32e-08 4.89e-08 1.26e-07 1.25e-07 1.5e-07 3.17e-08 1.63e-07 1.26e-07 1.13e-07 9.74e-08 1.24e-07 9.88e-08 1.06e-07 3.54e-08 3.68e-08 8.23e-08 5.64e-08 3.14e-08 5.59e-08 8.61e-08 6.86e-08 4.19e-08 4.92e-08 1.46e-07 5.22e-08 1.86e-08 3.41e-08 1.89e-08 1e-07 1.91e-09 4.8e-08