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Genes within 1Mb (chr1:54826940:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 25617 sc-eQTL 6.33e-03 0.401 0.145 0.054 B_Activated L2
ENSG00000058799 YIPF1 937142 sc-eQTL 4.40e-04 0.694 0.194 0.054 B_Activated L2
ENSG00000058804 NDC1 988477 sc-eQTL 3.81e-01 0.165 0.188 0.054 B_Activated L2
ENSG00000081870 HSPB11 881011 sc-eQTL 5.48e-01 -0.123 0.204 0.054 B_Activated L2
ENSG00000116133 DHCR24 -60255 sc-eQTL 9.24e-01 -0.0167 0.174 0.054 B_Activated L2
ENSG00000116205 TCEANC2 773356 sc-eQTL 2.77e-01 0.203 0.186 0.054 B_Activated L2
ENSG00000116209 TMEM59 773436 sc-eQTL 7.97e-01 -0.051 0.198 0.054 B_Activated L2
ENSG00000116212 LRRC42 880855 sc-eQTL 6.87e-03 -0.516 0.188 0.054 B_Activated L2
ENSG00000116221 MRPL37 642899 sc-eQTL 7.97e-01 -0.0552 0.214 0.054 B_Activated L2
ENSG00000157216 SSBP3 413461 sc-eQTL 4.12e-01 0.159 0.194 0.054 B_Activated L2
ENSG00000162402 USP24 -388424 sc-eQTL 8.38e-01 0.0387 0.189 0.054 B_Activated L2
ENSG00000215883 CYB5RL 626904 sc-eQTL 6.58e-01 0.0741 0.167 0.054 B_Activated L2
ENSG00000243725 TTC4 111079 sc-eQTL 6.19e-01 -0.0903 0.181 0.054 B_Activated L2
ENSG00000006555 TTC22 25617 sc-eQTL 6.30e-01 0.0982 0.203 0.056 PB L2
ENSG00000058799 YIPF1 937142 sc-eQTL 5.81e-01 -0.0791 0.143 0.056 PB L2
ENSG00000058804 NDC1 988477 sc-eQTL 2.09e-02 0.487 0.208 0.056 PB L2
ENSG00000081870 HSPB11 881011 sc-eQTL 1.27e-01 0.273 0.178 0.056 PB L2
ENSG00000116133 DHCR24 -60255 sc-eQTL 3.55e-01 -0.167 0.18 0.056 PB L2
ENSG00000116205 TCEANC2 773356 sc-eQTL 8.54e-01 -0.0406 0.22 0.056 PB L2
ENSG00000116209 TMEM59 773436 sc-eQTL 5.66e-01 -0.0528 0.0917 0.056 PB L2
ENSG00000116212 LRRC42 880855 sc-eQTL 7.84e-01 -0.0569 0.207 0.056 PB L2
ENSG00000116221 MRPL37 642899 sc-eQTL 9.03e-01 -0.0205 0.167 0.056 PB L2
ENSG00000157216 SSBP3 413461 sc-eQTL 2.62e-01 0.216 0.192 0.056 PB L2
ENSG00000162402 USP24 -388424 sc-eQTL 7.00e-01 0.0846 0.219 0.056 PB L2
ENSG00000215883 CYB5RL 626904 sc-eQTL 4.12e-01 0.186 0.226 0.056 PB L2
ENSG00000243725 TTC4 111079 sc-eQTL 2.51e-01 -0.243 0.211 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162398 LEXM 20877 eQTL 0.0051 -0.152 0.0542 0.011 0.00406 0.0329
ENSG00000169174 PCSK9 -212608 eQTL 0.0389 -0.0917 0.0443 0.00107 0.0 0.0329

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162398 LEXM 20877 3.44e-05 2.96e-05 5.89e-06 1.5e-05 5.29e-06 1.29e-05 4.07e-05 4.18e-06 2.67e-05 1.27e-05 3.19e-05 1.52e-05 3.98e-05 1.24e-05 6.73e-06 1.61e-05 1.61e-05 2.41e-05 7.41e-06 5.95e-06 1.3e-05 2.83e-05 2.86e-05 7.73e-06 4.15e-05 7.68e-06 1.18e-05 1.07e-05 3.01e-05 2.09e-05 1.78e-05 1.64e-06 2.37e-06 6.71e-06 1.04e-05 5.17e-06 2.7e-06 3.14e-06 4.95e-06 2.88e-06 1.72e-06 3.22e-05 3.55e-06 3.57e-07 2.12e-06 3.59e-06 3.88e-06 1.45e-06 1.38e-06