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Genes within 1Mb (chr1:53124129:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -765669 sc-eQTL 9.52e-01 0.014 0.23 0.05 CD8_TEM L2
ENSG00000058804 NDC1 -714334 sc-eQTL 7.36e-01 -0.0736 0.218 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 -821800 sc-eQTL 9.01e-01 -0.0257 0.207 0.05 CD8_TEM L2
ENSG00000116157 GPX7 521758 sc-eQTL 1.93e-01 -0.289 0.221 0.05 CD8_TEM L2
ENSG00000116171 SCP2 196853 sc-eQTL 8.15e-01 -0.0443 0.189 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -929455 sc-eQTL 1.80e-04 0.823 0.216 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -929375 sc-eQTL 7.55e-01 0.0675 0.216 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 -821956 sc-eQTL 7.04e-01 0.0885 0.233 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 196917 sc-eQTL 4.71e-01 0.173 0.239 0.05 CD8_TEM L2
ENSG00000134744 TUT4 570642 sc-eQTL 1.32e-01 0.321 0.212 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A 719527 sc-eQTL 8.99e-01 -0.0284 0.222 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B 757936 sc-eQTL 4.44e-02 0.443 0.219 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 982035 sc-eQTL 7.49e-01 -0.0644 0.201 0.05 CD8_TEM L2
ENSG00000157184 CPT2 -72663 sc-eQTL 8.44e-01 0.0448 0.227 0.05 CD8_TEM L2
ENSG00000157193 LRP8 -204340 sc-eQTL 7.11e-01 -0.0806 0.218 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B 397676 sc-eQTL 8.98e-01 -0.029 0.225 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 -18503 sc-eQTL 8.06e-01 0.0345 0.141 0.05 CD8_TEM L2
ENSG00000162384 CZIB -96505 sc-eQTL 3.59e-01 0.214 0.232 0.05 CD8_TEM L2
ENSG00000162385 MAGOH -114389 sc-eQTL 3.45e-01 -0.186 0.196 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A 490961 sc-eQTL 3.56e-03 0.617 0.209 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 -765669 sc-eQTL 6.00e-01 0.0825 0.157 0.059 PB L2
ENSG00000058804 NDC1 -714334 sc-eQTL 2.57e-01 0.265 0.233 0.059 PB L2
ENSG00000081870 HSPB11 -821800 sc-eQTL 4.33e-01 0.155 0.197 0.059 PB L2
ENSG00000116157 GPX7 521758 sc-eQTL 8.40e-01 -0.0399 0.197 0.059 PB L2
ENSG00000116171 SCP2 196853 sc-eQTL 9.77e-01 -0.0049 0.17 0.059 PB L2
ENSG00000116205 TCEANC2 -929455 sc-eQTL 7.55e-01 -0.0756 0.241 0.059 PB L2
ENSG00000116209 TMEM59 -929375 sc-eQTL 8.74e-01 -0.0161 0.101 0.059 PB L2
ENSG00000116212 LRRC42 -821956 sc-eQTL 7.58e-01 0.0704 0.227 0.059 PB L2
ENSG00000121310 ECHDC2 196917 sc-eQTL 4.34e-02 0.509 0.249 0.059 PB L2
ENSG00000134744 TUT4 570642 sc-eQTL 9.22e-03 0.596 0.225 0.059 PB L2
ENSG00000134748 PRPF38A 719527 sc-eQTL 6.49e-01 0.0998 0.219 0.059 PB L2
ENSG00000154222 CC2D1B 757936 sc-eQTL 4.68e-01 0.175 0.24 0.059 PB L2
ENSG00000157184 CPT2 -72663 sc-eQTL 6.71e-01 -0.093 0.218 0.059 PB L2
ENSG00000157193 LRP8 -204340 sc-eQTL 4.63e-01 -0.17 0.23 0.059 PB L2
ENSG00000162377 COA7 425782 sc-eQTL 1.67e-01 -0.31 0.223 0.059 PB L2
ENSG00000162378 ZYG11B 397676 sc-eQTL 7.73e-01 -0.0709 0.246 0.059 PB L2
ENSG00000162384 CZIB -96505 sc-eQTL 8.21e-01 0.0546 0.241 0.059 PB L2
ENSG00000162385 MAGOH -114389 sc-eQTL 3.45e-01 -0.21 0.222 0.059 PB L2
ENSG00000182183 SHISAL2A 490961 sc-eQTL 7.46e-01 0.0662 0.204 0.059 PB L2
ENSG00000230138 LINC02812 -244116 sc-eQTL 6.47e-01 0.082 0.179 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058804 NDC1 -714334 eQTL 4.48e-02 0.0875 0.0436 0.0 0.0 0.0397
ENSG00000121310 ECHDC2 196917 eQTL 0.045 -0.0867 0.0432 0.0 0.0 0.0397
ENSG00000162383 SLC1A7 -18503 eQTL 0.0142 0.166 0.0675 0.00117 0.0 0.0397
ENSG00000226754 AL606760.1 -114481 eQTL 0.0491 0.195 0.0989 0.00119 0.0 0.0397

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000154222 \N 757936 1.22e-06 2.43e-06 2.95e-07 1.27e-06 2.93e-07 4.46e-07 1.25e-06 3.28e-07 1.88e-06 8.46e-07 5.29e-06 3.56e-06 3.99e-06 1.39e-06 9.3e-07 1.06e-06 7.72e-07 1.29e-06 3.79e-07 2.76e-07 7.72e-07 3.17e-06 9.21e-07 1.63e-07 2.33e-06 3.17e-07 9.31e-07 1.77e-06 1.35e-06 1.01e-06 2.05e-06 5.4e-08 1.35e-07 6.23e-07 6.22e-07 3e-07 1.23e-07 1.21e-07 3.93e-07 2.32e-07 9.99e-08 7e-06 6.23e-08 5.93e-09 9.64e-08 3.21e-07 1.37e-07 3.04e-09 4.91e-08
ENSG00000182183 \N 490961 1.93e-06 5.32e-06 3.61e-07 1.93e-06 6.22e-07 8.14e-07 4.08e-06 5.78e-07 4.76e-06 2.99e-06 1.24e-05 4.9e-06 1.02e-05 2.19e-06 1.45e-06 3.85e-06 1.09e-06 3.23e-06 6.6e-07 7.62e-07 1.79e-06 7.5e-06 2.31e-06 5.78e-07 4.95e-06 1.22e-06 1.77e-06 2.43e-06 3.41e-06 1.65e-06 4.12e-06 4.87e-08 3.9e-07 1.84e-06 1.02e-06 6.2e-07 6.91e-07 3.92e-07 1.21e-06 4.27e-07 3.03e-07 2.17e-05 5.93e-07 6.53e-08 2.49e-07 1.34e-06 2.47e-07 8.96e-08 5.13e-08