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Genes within 1Mb (chr1:53116300:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -773498 sc-eQTL 9.52e-01 0.014 0.23 0.05 CD8_TEM L2
ENSG00000058804 NDC1 -722163 sc-eQTL 7.36e-01 -0.0736 0.218 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 -829629 sc-eQTL 9.01e-01 -0.0257 0.207 0.05 CD8_TEM L2
ENSG00000116157 GPX7 513929 sc-eQTL 1.93e-01 -0.289 0.221 0.05 CD8_TEM L2
ENSG00000116171 SCP2 189024 sc-eQTL 8.15e-01 -0.0443 0.189 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -937284 sc-eQTL 1.80e-04 0.823 0.216 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -937204 sc-eQTL 7.55e-01 0.0675 0.216 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 -829785 sc-eQTL 7.04e-01 0.0885 0.233 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 189088 sc-eQTL 4.71e-01 0.173 0.239 0.05 CD8_TEM L2
ENSG00000134744 TUT4 562813 sc-eQTL 1.32e-01 0.321 0.212 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A 711698 sc-eQTL 8.99e-01 -0.0284 0.222 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B 750107 sc-eQTL 4.44e-02 0.443 0.219 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 974206 sc-eQTL 7.49e-01 -0.0644 0.201 0.05 CD8_TEM L2
ENSG00000157184 CPT2 -80492 sc-eQTL 8.44e-01 0.0448 0.227 0.05 CD8_TEM L2
ENSG00000157193 LRP8 -212169 sc-eQTL 7.11e-01 -0.0806 0.218 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B 389847 sc-eQTL 8.98e-01 -0.029 0.225 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 -26332 sc-eQTL 8.06e-01 0.0345 0.141 0.05 CD8_TEM L2
ENSG00000162384 CZIB -104334 sc-eQTL 3.59e-01 0.214 0.232 0.05 CD8_TEM L2
ENSG00000162385 MAGOH -122218 sc-eQTL 3.45e-01 -0.186 0.196 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A 483132 sc-eQTL 3.56e-03 0.617 0.209 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 -773498 sc-eQTL 6.00e-01 0.0825 0.157 0.059 PB L2
ENSG00000058804 NDC1 -722163 sc-eQTL 2.57e-01 0.265 0.233 0.059 PB L2
ENSG00000081870 HSPB11 -829629 sc-eQTL 4.33e-01 0.155 0.197 0.059 PB L2
ENSG00000116157 GPX7 513929 sc-eQTL 8.40e-01 -0.0399 0.197 0.059 PB L2
ENSG00000116171 SCP2 189024 sc-eQTL 9.77e-01 -0.0049 0.17 0.059 PB L2
ENSG00000116205 TCEANC2 -937284 sc-eQTL 7.55e-01 -0.0756 0.241 0.059 PB L2
ENSG00000116209 TMEM59 -937204 sc-eQTL 8.74e-01 -0.0161 0.101 0.059 PB L2
ENSG00000116212 LRRC42 -829785 sc-eQTL 7.58e-01 0.0704 0.227 0.059 PB L2
ENSG00000121310 ECHDC2 189088 sc-eQTL 4.34e-02 0.509 0.249 0.059 PB L2
ENSG00000134744 TUT4 562813 sc-eQTL 9.22e-03 0.596 0.225 0.059 PB L2
ENSG00000134748 PRPF38A 711698 sc-eQTL 6.49e-01 0.0998 0.219 0.059 PB L2
ENSG00000154222 CC2D1B 750107 sc-eQTL 4.68e-01 0.175 0.24 0.059 PB L2
ENSG00000157184 CPT2 -80492 sc-eQTL 6.71e-01 -0.093 0.218 0.059 PB L2
ENSG00000157193 LRP8 -212169 sc-eQTL 4.63e-01 -0.17 0.23 0.059 PB L2
ENSG00000162377 COA7 417953 sc-eQTL 1.67e-01 -0.31 0.223 0.059 PB L2
ENSG00000162378 ZYG11B 389847 sc-eQTL 7.73e-01 -0.0709 0.246 0.059 PB L2
ENSG00000162384 CZIB -104334 sc-eQTL 8.21e-01 0.0546 0.241 0.059 PB L2
ENSG00000162385 MAGOH -122218 sc-eQTL 3.45e-01 -0.21 0.222 0.059 PB L2
ENSG00000182183 SHISAL2A 483132 sc-eQTL 7.46e-01 0.0662 0.204 0.059 PB L2
ENSG00000230138 LINC02812 -251945 sc-eQTL 6.47e-01 0.082 0.179 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121310 ECHDC2 189088 eQTL 0.0232 -0.1 0.044 0.0 0.0 0.0383
ENSG00000162383 SLC1A7 -26332 eQTL 0.0158 0.167 0.0689 0.0 0.0 0.0383
ENSG00000226754 AL606760.1 -122310 eQTL 0.0504 0.198 0.101 0.00117 0.0 0.0383

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000154222 \N 750107 2.6e-07 1.06e-07 3.31e-08 1.78e-07 9.91e-08 9.13e-08 1.39e-07 5.21e-08 1.36e-07 4.24e-08 1.63e-07 7.58e-08 1.23e-07 6.21e-08 5.44e-08 8.01e-08 5.1e-08 1.07e-07 5.19e-08 3.29e-08 1.06e-07 1.31e-07 1.29e-07 4.82e-08 1.32e-07 1.09e-07 1.13e-07 8.71e-08 1.05e-07 1.1e-07 9.5e-08 3.82e-08 2.74e-08 8.3e-08 9.07e-08 3.9e-08 5.03e-08 9.25e-08 8.42e-08 3.09e-08 3.44e-08 1.4e-07 3.98e-08 7.56e-09 8.79e-08 1.75e-08 1.26e-07 4.33e-09 4.85e-08