logo

Genes within 1Mb (chr1:52638413:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 759476 sc-eQTL 5.48e-01 -0.127 0.21 0.05 CD4_CTL L2
ENSG00000116157 GPX7 36042 sc-eQTL 9.45e-01 0.0144 0.207 0.05 CD4_CTL L2
ENSG00000116171 SCP2 -288863 sc-eQTL 2.98e-01 0.174 0.167 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 582242 sc-eQTL 1.97e-01 0.263 0.203 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 -288799 sc-eQTL 1.06e-01 -0.337 0.208 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 582214 sc-eQTL 3.44e-01 0.195 0.206 0.05 CD4_CTL L2
ENSG00000134744 TUT4 84926 sc-eQTL 6.24e-02 -0.362 0.193 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A 233811 sc-eQTL 5.23e-01 0.132 0.207 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B 272220 sc-eQTL 9.35e-01 0.0169 0.206 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 496319 sc-eQTL 5.62e-01 -0.11 0.19 0.05 CD4_CTL L2
ENSG00000157184 CPT2 -558379 sc-eQTL 9.49e-01 -0.0126 0.197 0.05 CD4_CTL L2
ENSG00000157193 LRP8 -690056 sc-eQTL 2.03e-01 0.256 0.2 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -88040 sc-eQTL 6.89e-02 0.369 0.202 0.05 CD4_CTL L2
ENSG00000162384 CZIB -582221 sc-eQTL 4.70e-01 -0.152 0.21 0.05 CD4_CTL L2
ENSG00000162385 MAGOH -600105 sc-eQTL 6.91e-01 -0.0764 0.192 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A 5245 sc-eQTL 3.96e-01 0.157 0.184 0.05 CD4_CTL L2
ENSG00000198841 KTI12 604603 sc-eQTL 2.77e-01 -0.217 0.199 0.05 CD4_CTL L2
ENSG00000078618 NRDC 759476 sc-eQTL 3.37e-01 -0.195 0.202 0.051 CD8_TCM L2
ENSG00000116157 GPX7 36042 sc-eQTL 9.41e-02 0.357 0.212 0.051 CD8_TCM L2
ENSG00000116171 SCP2 -288863 sc-eQTL 1.80e-01 0.247 0.183 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 582242 sc-eQTL 3.95e-01 -0.167 0.196 0.051 CD8_TCM L2
ENSG00000121310 ECHDC2 -288799 sc-eQTL 9.57e-01 -0.0114 0.212 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 582214 sc-eQTL 8.71e-01 -0.0327 0.201 0.051 CD8_TCM L2
ENSG00000134744 TUT4 84926 sc-eQTL 4.13e-01 -0.161 0.196 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A 233811 sc-eQTL 6.29e-01 0.0942 0.195 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B 272220 sc-eQTL 2.07e-01 0.247 0.195 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 496319 sc-eQTL 9.43e-01 0.0143 0.201 0.051 CD8_TCM L2
ENSG00000157184 CPT2 -558379 sc-eQTL 8.98e-01 -0.0272 0.211 0.051 CD8_TCM L2
ENSG00000157193 LRP8 -690056 sc-eQTL 8.64e-01 -0.0321 0.187 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -88040 sc-eQTL 1.57e-01 0.278 0.196 0.051 CD8_TCM L2
ENSG00000162383 SLC1A7 -504219 sc-eQTL 7.40e-03 0.114 0.0421 0.051 CD8_TCM L2
ENSG00000162384 CZIB -582221 sc-eQTL 3.33e-01 -0.194 0.2 0.051 CD8_TCM L2
ENSG00000162385 MAGOH -600105 sc-eQTL 8.37e-01 -0.039 0.189 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A 5245 sc-eQTL 5.07e-02 0.377 0.192 0.051 CD8_TCM L2
ENSG00000198841 KTI12 604603 sc-eQTL 5.11e-01 0.136 0.206 0.051 CD8_TCM L2
ENSG00000078618 NRDC 759476 sc-eQTL 4.49e-01 -0.158 0.209 0.05 NK_HLA L2
ENSG00000116157 GPX7 36042 sc-eQTL 8.11e-02 -0.344 0.196 0.05 NK_HLA L2
ENSG00000116171 SCP2 -288863 sc-eQTL 5.78e-01 0.0881 0.158 0.05 NK_HLA L2
ENSG00000117862 TXNDC12 582242 sc-eQTL 9.60e-01 0.0102 0.201 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 -288799 sc-eQTL 2.32e-01 -0.243 0.203 0.05 NK_HLA L2
ENSG00000134717 BTF3L4 582214 sc-eQTL 5.47e-01 0.121 0.201 0.05 NK_HLA L2
ENSG00000134744 TUT4 84926 sc-eQTL 8.05e-01 0.0498 0.201 0.05 NK_HLA L2
ENSG00000134748 PRPF38A 233811 sc-eQTL 7.18e-01 0.0732 0.202 0.05 NK_HLA L2
ENSG00000154222 CC2D1B 272220 sc-eQTL 1.88e-02 0.491 0.207 0.05 NK_HLA L2
ENSG00000157184 CPT2 -558379 sc-eQTL 6.66e-01 0.0814 0.188 0.05 NK_HLA L2
ENSG00000157193 LRP8 -690056 sc-eQTL 4.17e-01 0.155 0.191 0.05 NK_HLA L2
ENSG00000162377 COA7 -59934 sc-eQTL 1.84e-01 -0.239 0.179 0.05 NK_HLA L2
ENSG00000162378 ZYG11B -88040 sc-eQTL 9.80e-01 -0.00487 0.198 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 -504219 sc-eQTL 5.96e-01 -0.0967 0.182 0.05 NK_HLA L2
ENSG00000162384 CZIB -582221 sc-eQTL 6.47e-02 0.352 0.189 0.05 NK_HLA L2
ENSG00000162385 MAGOH -600105 sc-eQTL 8.43e-02 0.315 0.182 0.05 NK_HLA L2
ENSG00000174348 PODN -423639 sc-eQTL 6.66e-01 0.0821 0.19 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A 5245 sc-eQTL 3.45e-02 0.422 0.198 0.05 NK_HLA L2
ENSG00000198841 KTI12 604603 sc-eQTL 2.85e-01 0.211 0.197 0.05 NK_HLA L2
ENSG00000078618 NRDC 759476 sc-eQTL 6.46e-01 -0.0872 0.19 0.051 cDC L2
ENSG00000116157 GPX7 36042 sc-eQTL 1.61e-01 0.246 0.175 0.051 cDC L2
ENSG00000116171 SCP2 -288863 sc-eQTL 5.07e-01 0.114 0.172 0.051 cDC L2
ENSG00000117862 TXNDC12 582242 sc-eQTL 4.78e-01 0.131 0.185 0.051 cDC L2
ENSG00000121310 ECHDC2 -288799 sc-eQTL 2.88e-01 0.212 0.199 0.051 cDC L2
ENSG00000134717 BTF3L4 582214 sc-eQTL 9.39e-01 0.0143 0.187 0.051 cDC L2
ENSG00000134744 TUT4 84926 sc-eQTL 4.67e-01 0.151 0.208 0.051 cDC L2
ENSG00000134748 PRPF38A 233811 sc-eQTL 4.78e-01 0.136 0.191 0.051 cDC L2
ENSG00000154222 CC2D1B 272220 sc-eQTL 7.98e-01 -0.0533 0.208 0.051 cDC L2
ENSG00000157184 CPT2 -558379 sc-eQTL 9.47e-01 0.0133 0.2 0.051 cDC L2
ENSG00000157193 LRP8 -690056 sc-eQTL 6.40e-01 0.0957 0.204 0.051 cDC L2
ENSG00000162377 COA7 -59934 sc-eQTL 5.07e-01 0.131 0.197 0.051 cDC L2
ENSG00000162378 ZYG11B -88040 sc-eQTL 1.62e-01 0.291 0.207 0.051 cDC L2
ENSG00000162384 CZIB -582221 sc-eQTL 6.38e-01 -0.088 0.187 0.051 cDC L2
ENSG00000162385 MAGOH -600105 sc-eQTL 6.42e-01 0.0798 0.171 0.051 cDC L2
ENSG00000198841 KTI12 604603 sc-eQTL 2.84e-01 0.21 0.195 0.051 cDC L2
ENSG00000230138 LINC02812 -729832 sc-eQTL 9.65e-01 0.00771 0.176 0.051 cDC L2
ENSG00000078618 NRDC 759476 sc-eQTL 2.95e-01 -0.187 0.178 0.051 pDC L2
ENSG00000116157 GPX7 36042 sc-eQTL 8.52e-01 -0.0312 0.167 0.051 pDC L2
ENSG00000116171 SCP2 -288863 sc-eQTL 8.31e-01 0.0428 0.2 0.051 pDC L2
ENSG00000117862 TXNDC12 582242 sc-eQTL 7.19e-01 -0.0775 0.215 0.051 pDC L2
ENSG00000121310 ECHDC2 -288799 sc-eQTL 3.39e-01 0.207 0.216 0.051 pDC L2
ENSG00000134717 BTF3L4 582214 sc-eQTL 8.65e-01 -0.036 0.211 0.051 pDC L2
ENSG00000134744 TUT4 84926 sc-eQTL 9.59e-01 0.00928 0.18 0.051 pDC L2
ENSG00000134748 PRPF38A 233811 sc-eQTL 6.59e-01 -0.102 0.231 0.051 pDC L2
ENSG00000154222 CC2D1B 272220 sc-eQTL 8.23e-01 -0.0492 0.22 0.051 pDC L2
ENSG00000157184 CPT2 -558379 sc-eQTL 6.76e-01 0.0872 0.208 0.051 pDC L2
ENSG00000157193 LRP8 -690056 sc-eQTL 1.52e-01 -0.263 0.183 0.051 pDC L2
ENSG00000162377 COA7 -59934 sc-eQTL 8.50e-01 0.0338 0.178 0.051 pDC L2
ENSG00000162378 ZYG11B -88040 sc-eQTL 7.56e-01 0.0669 0.215 0.051 pDC L2
ENSG00000162384 CZIB -582221 sc-eQTL 9.67e-01 -0.00902 0.216 0.051 pDC L2
ENSG00000162385 MAGOH -600105 sc-eQTL 5.15e-01 0.126 0.193 0.051 pDC L2
ENSG00000198841 KTI12 604603 sc-eQTL 5.32e-01 -0.128 0.204 0.051 pDC L2
ENSG00000230138 LINC02812 -729832 sc-eQTL 9.94e-01 -0.0011 0.148 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 759476 eQTL 0.0155 -0.0446 0.0184 0.0 0.0 0.0447
ENSG00000085840 ORC1 233990 eQTL 0.019 0.0859 0.0366 0.00183 0.0 0.0447
ENSG00000116157 GPX7 36042 eQTL 0.0151 0.143 0.0589 0.0 0.0 0.0447
ENSG00000116171 SCP2 -288863 eQTL 0.00498 0.106 0.0375 0.0 0.0 0.0447
ENSG00000154222 CC2D1B 272220 eQTL 1.14e-11 0.278 0.0405 0.00146 0.0 0.0447
ENSG00000162378 ZYG11B -88040 eQTL 0.0424 -0.0942 0.0464 0.0 0.0 0.0447
ENSG00000162384 CZIB -582221 eQTL 0.0296 0.073 0.0335 0.0 0.0 0.0447
ENSG00000182183 SHISAL2A 5245 eQTL 2.35e-05 0.17 0.04 0.00282 0.00141 0.0447
ENSG00000226147 TUBBP10 -356313 eQTL 0.045 0.186 0.0925 0.0 0.0 0.0447
ENSG00000266993 AL050343.1 844479 eQTL 0.000107 -0.198 0.051 0.0 0.0 0.0447
ENSG00000285954 AC119428.3 -705618 eQTL 0.0527 0.158 0.0817 0.00114 0.0 0.0447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 759476 4.89e-07 1.16e-07 3.72e-08 1.84e-07 8.92e-08 8.85e-08 1.53e-07 5.19e-08 1.4e-07 4.74e-08 1.56e-07 8.36e-08 1.41e-07 6.56e-08 6.25e-08 7.53e-08 3.94e-08 1.44e-07 5.75e-08 4.42e-08 1.08e-07 1.27e-07 1.34e-07 3.42e-08 1.37e-07 1.14e-07 1.06e-07 9.36e-08 1.08e-07 1.1e-07 9.73e-08 3.96e-08 3.61e-08 8.25e-08 8.21e-08 3.97e-08 5.08e-08 9.61e-08 7.2e-08 3.98e-08 4.88e-08 1.33e-07 5.08e-08 2.09e-08 6.92e-08 1.83e-08 1.2e-07 3.89e-09 4.81e-08
ENSG00000154222 CC2D1B 272220 4.25e-06 9.52e-07 2.95e-07 7e-07 1.38e-07 7.85e-07 1.63e-06 3.3e-07 1.13e-06 3.71e-07 1.26e-06 6.2e-07 1.73e-06 2.88e-07 4.14e-07 9.42e-07 7.73e-07 1.09e-06 7.73e-07 4.68e-07 4.39e-07 1.72e-06 8.27e-07 5.79e-07 2.05e-06 3.87e-07 8.29e-07 6.46e-07 1.25e-06 1.25e-06 5.48e-07 4.53e-08 1.81e-07 6.53e-07 4.25e-07 1.85e-07 3.79e-07 1.53e-07 1.38e-07 2.29e-07 1.97e-07 1.46e-06 4.37e-07 1.78e-08 1.95e-07 6.87e-08 2.8e-07 8.88e-08 1.14e-07
ENSG00000157184 \N -558379 1.29e-06 1.53e-07 5.72e-08 2.27e-07 9.79e-08 2.42e-07 2.5e-07 5.85e-08 1.5e-07 8.53e-08 1.73e-07 1.22e-07 1.95e-07 8.15e-08 9.12e-08 9.48e-08 4.45e-08 2.83e-07 7.27e-08 5.33e-08 1.18e-07 1.9e-07 1.64e-07 3.42e-08 2.09e-07 1.39e-07 1.22e-07 1.04e-07 1.32e-07 1.1e-07 1.08e-07 3.54e-08 3.65e-08 9.72e-08 3.36e-08 3.04e-08 3.91e-08 9.17e-08 6.41e-08 5.96e-08 6e-08 1.6e-07 2.32e-08 1.53e-08 3.84e-08 1.55e-08 9.19e-08 1.95e-09 4.74e-08
ENSG00000266993 AL050343.1 844479 3.27e-07 1.1e-07 3.59e-08 1.82e-07 9.02e-08 8.45e-08 1.42e-07 5.33e-08 1.41e-07 4.4e-08 1.6e-07 7.75e-08 1.26e-07 6.38e-08 6.02e-08 7.17e-08 4.48e-08 1.27e-07 5.39e-08 4.2e-08 1.05e-07 1.23e-07 1.26e-07 4.16e-08 1.33e-07 1.14e-07 1.11e-07 9.15e-08 1.05e-07 1.12e-07 9.58e-08 4.1e-08 3.3e-08 8.68e-08 8.96e-08 3.87e-08 5.01e-08 9.55e-08 7.58e-08 3.54e-08 3.95e-08 1.31e-07 5.21e-08 2.96e-08 7.91e-08 1.67e-08 1.22e-07 4.04e-09 5.01e-08