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Genes within 1Mb (chr1:52635208:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 756271 sc-eQTL 5.48e-01 -0.127 0.21 0.05 CD4_CTL L2
ENSG00000116157 GPX7 32837 sc-eQTL 9.45e-01 0.0144 0.207 0.05 CD4_CTL L2
ENSG00000116171 SCP2 -292068 sc-eQTL 2.98e-01 0.174 0.167 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 579037 sc-eQTL 1.97e-01 0.263 0.203 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 -292004 sc-eQTL 1.06e-01 -0.337 0.208 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 579009 sc-eQTL 3.44e-01 0.195 0.206 0.05 CD4_CTL L2
ENSG00000134744 TUT4 81721 sc-eQTL 6.24e-02 -0.362 0.193 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A 230606 sc-eQTL 5.23e-01 0.132 0.207 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B 269015 sc-eQTL 9.35e-01 0.0169 0.206 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 493114 sc-eQTL 5.62e-01 -0.11 0.19 0.05 CD4_CTL L2
ENSG00000157184 CPT2 -561584 sc-eQTL 9.49e-01 -0.0126 0.197 0.05 CD4_CTL L2
ENSG00000157193 LRP8 -693261 sc-eQTL 2.03e-01 0.256 0.2 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -91245 sc-eQTL 6.89e-02 0.369 0.202 0.05 CD4_CTL L2
ENSG00000162384 CZIB -585426 sc-eQTL 4.70e-01 -0.152 0.21 0.05 CD4_CTL L2
ENSG00000162385 MAGOH -603310 sc-eQTL 6.91e-01 -0.0764 0.192 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A 2040 sc-eQTL 3.96e-01 0.157 0.184 0.05 CD4_CTL L2
ENSG00000198841 KTI12 601398 sc-eQTL 2.77e-01 -0.217 0.199 0.05 CD4_CTL L2
ENSG00000078618 NRDC 756271 sc-eQTL 3.37e-01 -0.195 0.202 0.051 CD8_TCM L2
ENSG00000116157 GPX7 32837 sc-eQTL 9.41e-02 0.357 0.212 0.051 CD8_TCM L2
ENSG00000116171 SCP2 -292068 sc-eQTL 1.80e-01 0.247 0.183 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 579037 sc-eQTL 3.95e-01 -0.167 0.196 0.051 CD8_TCM L2
ENSG00000121310 ECHDC2 -292004 sc-eQTL 9.57e-01 -0.0114 0.212 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 579009 sc-eQTL 8.71e-01 -0.0327 0.201 0.051 CD8_TCM L2
ENSG00000134744 TUT4 81721 sc-eQTL 4.13e-01 -0.161 0.196 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A 230606 sc-eQTL 6.29e-01 0.0942 0.195 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B 269015 sc-eQTL 2.07e-01 0.247 0.195 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 493114 sc-eQTL 9.43e-01 0.0143 0.201 0.051 CD8_TCM L2
ENSG00000157184 CPT2 -561584 sc-eQTL 8.98e-01 -0.0272 0.211 0.051 CD8_TCM L2
ENSG00000157193 LRP8 -693261 sc-eQTL 8.64e-01 -0.0321 0.187 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -91245 sc-eQTL 1.57e-01 0.278 0.196 0.051 CD8_TCM L2
ENSG00000162383 SLC1A7 -507424 sc-eQTL 7.40e-03 0.114 0.0421 0.051 CD8_TCM L2
ENSG00000162384 CZIB -585426 sc-eQTL 3.33e-01 -0.194 0.2 0.051 CD8_TCM L2
ENSG00000162385 MAGOH -603310 sc-eQTL 8.37e-01 -0.039 0.189 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A 2040 sc-eQTL 5.07e-02 0.377 0.192 0.051 CD8_TCM L2
ENSG00000198841 KTI12 601398 sc-eQTL 5.11e-01 0.136 0.206 0.051 CD8_TCM L2
ENSG00000078618 NRDC 756271 sc-eQTL 4.49e-01 -0.158 0.209 0.05 NK_HLA L2
ENSG00000116157 GPX7 32837 sc-eQTL 8.11e-02 -0.344 0.196 0.05 NK_HLA L2
ENSG00000116171 SCP2 -292068 sc-eQTL 5.78e-01 0.0881 0.158 0.05 NK_HLA L2
ENSG00000117862 TXNDC12 579037 sc-eQTL 9.60e-01 0.0102 0.201 0.05 NK_HLA L2
ENSG00000121310 ECHDC2 -292004 sc-eQTL 2.32e-01 -0.243 0.203 0.05 NK_HLA L2
ENSG00000134717 BTF3L4 579009 sc-eQTL 5.47e-01 0.121 0.201 0.05 NK_HLA L2
ENSG00000134744 TUT4 81721 sc-eQTL 8.05e-01 0.0498 0.201 0.05 NK_HLA L2
ENSG00000134748 PRPF38A 230606 sc-eQTL 7.18e-01 0.0732 0.202 0.05 NK_HLA L2
ENSG00000154222 CC2D1B 269015 sc-eQTL 1.88e-02 0.491 0.207 0.05 NK_HLA L2
ENSG00000157184 CPT2 -561584 sc-eQTL 6.66e-01 0.0814 0.188 0.05 NK_HLA L2
ENSG00000157193 LRP8 -693261 sc-eQTL 4.17e-01 0.155 0.191 0.05 NK_HLA L2
ENSG00000162377 COA7 -63139 sc-eQTL 1.84e-01 -0.239 0.179 0.05 NK_HLA L2
ENSG00000162378 ZYG11B -91245 sc-eQTL 9.80e-01 -0.00487 0.198 0.05 NK_HLA L2
ENSG00000162383 SLC1A7 -507424 sc-eQTL 5.96e-01 -0.0967 0.182 0.05 NK_HLA L2
ENSG00000162384 CZIB -585426 sc-eQTL 6.47e-02 0.352 0.189 0.05 NK_HLA L2
ENSG00000162385 MAGOH -603310 sc-eQTL 8.43e-02 0.315 0.182 0.05 NK_HLA L2
ENSG00000174348 PODN -426844 sc-eQTL 6.66e-01 0.0821 0.19 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A 2040 sc-eQTL 3.45e-02 0.422 0.198 0.05 NK_HLA L2
ENSG00000198841 KTI12 601398 sc-eQTL 2.85e-01 0.211 0.197 0.05 NK_HLA L2
ENSG00000078618 NRDC 756271 sc-eQTL 6.46e-01 -0.0872 0.19 0.051 cDC L2
ENSG00000116157 GPX7 32837 sc-eQTL 1.61e-01 0.246 0.175 0.051 cDC L2
ENSG00000116171 SCP2 -292068 sc-eQTL 5.07e-01 0.114 0.172 0.051 cDC L2
ENSG00000117862 TXNDC12 579037 sc-eQTL 4.78e-01 0.131 0.185 0.051 cDC L2
ENSG00000121310 ECHDC2 -292004 sc-eQTL 2.88e-01 0.212 0.199 0.051 cDC L2
ENSG00000134717 BTF3L4 579009 sc-eQTL 9.39e-01 0.0143 0.187 0.051 cDC L2
ENSG00000134744 TUT4 81721 sc-eQTL 4.67e-01 0.151 0.208 0.051 cDC L2
ENSG00000134748 PRPF38A 230606 sc-eQTL 4.78e-01 0.136 0.191 0.051 cDC L2
ENSG00000154222 CC2D1B 269015 sc-eQTL 7.98e-01 -0.0533 0.208 0.051 cDC L2
ENSG00000157184 CPT2 -561584 sc-eQTL 9.47e-01 0.0133 0.2 0.051 cDC L2
ENSG00000157193 LRP8 -693261 sc-eQTL 6.40e-01 0.0957 0.204 0.051 cDC L2
ENSG00000162377 COA7 -63139 sc-eQTL 5.07e-01 0.131 0.197 0.051 cDC L2
ENSG00000162378 ZYG11B -91245 sc-eQTL 1.62e-01 0.291 0.207 0.051 cDC L2
ENSG00000162384 CZIB -585426 sc-eQTL 6.38e-01 -0.088 0.187 0.051 cDC L2
ENSG00000162385 MAGOH -603310 sc-eQTL 6.42e-01 0.0798 0.171 0.051 cDC L2
ENSG00000198841 KTI12 601398 sc-eQTL 2.84e-01 0.21 0.195 0.051 cDC L2
ENSG00000230138 LINC02812 -733037 sc-eQTL 9.65e-01 0.00771 0.176 0.051 cDC L2
ENSG00000078618 NRDC 756271 sc-eQTL 2.95e-01 -0.187 0.178 0.051 pDC L2
ENSG00000116157 GPX7 32837 sc-eQTL 8.52e-01 -0.0312 0.167 0.051 pDC L2
ENSG00000116171 SCP2 -292068 sc-eQTL 8.31e-01 0.0428 0.2 0.051 pDC L2
ENSG00000117862 TXNDC12 579037 sc-eQTL 7.19e-01 -0.0775 0.215 0.051 pDC L2
ENSG00000121310 ECHDC2 -292004 sc-eQTL 3.39e-01 0.207 0.216 0.051 pDC L2
ENSG00000134717 BTF3L4 579009 sc-eQTL 8.65e-01 -0.036 0.211 0.051 pDC L2
ENSG00000134744 TUT4 81721 sc-eQTL 9.59e-01 0.00928 0.18 0.051 pDC L2
ENSG00000134748 PRPF38A 230606 sc-eQTL 6.59e-01 -0.102 0.231 0.051 pDC L2
ENSG00000154222 CC2D1B 269015 sc-eQTL 8.23e-01 -0.0492 0.22 0.051 pDC L2
ENSG00000157184 CPT2 -561584 sc-eQTL 6.76e-01 0.0872 0.208 0.051 pDC L2
ENSG00000157193 LRP8 -693261 sc-eQTL 1.52e-01 -0.263 0.183 0.051 pDC L2
ENSG00000162377 COA7 -63139 sc-eQTL 8.50e-01 0.0338 0.178 0.051 pDC L2
ENSG00000162378 ZYG11B -91245 sc-eQTL 7.56e-01 0.0669 0.215 0.051 pDC L2
ENSG00000162384 CZIB -585426 sc-eQTL 9.67e-01 -0.00902 0.216 0.051 pDC L2
ENSG00000162385 MAGOH -603310 sc-eQTL 5.15e-01 0.126 0.193 0.051 pDC L2
ENSG00000198841 KTI12 601398 sc-eQTL 5.32e-01 -0.128 0.204 0.051 pDC L2
ENSG00000230138 LINC02812 -733037 sc-eQTL 9.94e-01 -0.0011 0.148 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 756271 eQTL 0.0155 -0.0446 0.0184 0.0 0.0 0.0447
ENSG00000085840 ORC1 230785 eQTL 0.019 0.0859 0.0366 0.00183 0.0 0.0447
ENSG00000116157 GPX7 32837 eQTL 0.0151 0.143 0.0589 0.0 0.0 0.0447
ENSG00000116171 SCP2 -292068 eQTL 0.00498 0.106 0.0375 0.0 0.0 0.0447
ENSG00000154222 CC2D1B 269015 eQTL 1.14e-11 0.278 0.0405 0.00146 0.0 0.0447
ENSG00000162378 ZYG11B -91245 eQTL 0.0424 -0.0942 0.0464 0.0 0.0 0.0447
ENSG00000162384 CZIB -585426 eQTL 0.0296 0.073 0.0335 0.0 0.0 0.0447
ENSG00000182183 SHISAL2A 2040 eQTL 2.35e-05 0.17 0.04 0.00282 0.00143 0.0447
ENSG00000226147 TUBBP10 -359518 eQTL 0.045 0.186 0.0925 0.0 0.0 0.0447
ENSG00000266993 AL050343.1 841274 eQTL 0.000107 -0.198 0.051 0.0 0.0 0.0447
ENSG00000285954 AC119428.3 -708823 eQTL 0.0527 0.158 0.0817 0.00114 0.0 0.0447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 756271 2.67e-07 1.3e-07 5.64e-08 1.83e-07 8.83e-08 9.05e-08 1.44e-07 5.33e-08 1.45e-07 5.42e-08 1.6e-07 8.59e-08 1.47e-07 6.76e-08 5.91e-08 7.3e-08 3.94e-08 1.26e-07 6.07e-08 5.33e-08 1.22e-07 1.27e-07 1.44e-07 3.79e-08 1.4e-07 1.14e-07 1.06e-07 9.74e-08 1.08e-07 1.07e-07 1.06e-07 4.93e-08 3.51e-08 8.25e-08 6.34e-08 3.76e-08 4.54e-08 7.25e-08 6.67e-08 4.19e-08 5.1e-08 1.35e-07 3.55e-08 1.84e-08 5.15e-08 1.68e-08 1.2e-07 0.0 4.61e-08
ENSG00000154222 CC2D1B 269015 1.28e-06 1.03e-06 2.28e-07 1.18e-06 1.4e-07 6.27e-07 1.13e-06 2.26e-07 1.52e-06 5.11e-07 1.41e-06 5.93e-07 2.01e-06 2.96e-07 5.69e-07 7.54e-07 7.87e-07 6.58e-07 8.35e-07 4.4e-07 6.61e-07 1.6e-06 8.95e-07 4.44e-07 2.11e-06 4.36e-07 6.13e-07 7.19e-07 1.17e-06 1.23e-06 8.57e-07 2.49e-07 2e-07 5.78e-07 5.42e-07 2.99e-07 7.58e-07 3.42e-07 4.97e-07 3.23e-07 3.18e-07 1.56e-06 2.46e-07 1.95e-07 1.82e-07 1.71e-07 2.35e-07 1.49e-07 2.05e-07
ENSG00000157184 \N -561584 3.53e-07 1.7e-07 7.6e-08 2.35e-07 1.01e-07 1.19e-07 1.81e-07 5.43e-08 1.86e-07 1.05e-07 1.59e-07 1.2e-07 2.38e-07 8.15e-08 6.2e-08 8.08e-08 4.31e-08 1.8e-07 7.11e-08 8.1e-08 1.33e-07 1.7e-07 1.68e-07 3.17e-08 2.02e-07 1.31e-07 1.17e-07 1.42e-07 1.31e-07 1.05e-07 1.43e-07 7.03e-08 4.97e-08 9.3e-08 6.35e-08 3.05e-08 1.1e-07 8.33e-08 4.74e-08 7.17e-08 4.82e-08 1.6e-07 1.7e-08 1.27e-08 3.29e-08 8.59e-09 7.52e-08 1.22e-08 5.76e-08
ENSG00000266993 AL050343.1 841274 2.69e-07 1.19e-07 5.14e-08 1.82e-07 8.92e-08 9.76e-08 1.38e-07 5.49e-08 1.44e-07 4.74e-08 1.59e-07 7.78e-08 1.41e-07 6.38e-08 5.99e-08 7.17e-08 4.48e-08 1.18e-07 5.82e-08 4.89e-08 1.13e-07 1.23e-07 1.34e-07 4.13e-08 1.33e-07 1.16e-07 1.11e-07 9.65e-08 1.05e-07 1.12e-07 9.7e-08 3.84e-08 3.89e-08 8.68e-08 8.21e-08 3.97e-08 5.35e-08 8.57e-08 6.86e-08 3.8e-08 5.59e-08 1.33e-07 5.22e-08 2.03e-08 5.75e-08 1.89e-08 1.21e-07 2.13e-09 4.72e-08