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Genes within 1Mb (chr1:54653793:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 763995 sc-eQTL 4.46e-01 0.158 0.207 0.051 cDC L2
ENSG00000058804 NDC1 815330 sc-eQTL 6.00e-02 -0.393 0.208 0.051 cDC L2
ENSG00000081870 HSPB11 707864 sc-eQTL 7.35e-01 -0.0749 0.221 0.051 cDC L2
ENSG00000116133 DHCR24 -233402 sc-eQTL 1.75e-01 0.232 0.171 0.051 cDC L2
ENSG00000116205 TCEANC2 600209 sc-eQTL 7.74e-01 -0.0582 0.202 0.051 cDC L2
ENSG00000116209 TMEM59 600289 sc-eQTL 5.27e-01 -0.109 0.172 0.051 cDC L2
ENSG00000116212 LRRC42 707708 sc-eQTL 4.69e-01 -0.152 0.21 0.051 cDC L2
ENSG00000116221 MRPL37 469752 sc-eQTL 4.50e-01 0.166 0.219 0.051 cDC L2
ENSG00000157216 SSBP3 240314 sc-eQTL 5.15e-02 0.393 0.2 0.051 cDC L2
ENSG00000162390 ACOT11 111536 sc-eQTL 9.96e-01 -0.000898 0.188 0.051 cDC L2
ENSG00000162402 USP24 -561571 sc-eQTL 3.24e-01 -0.208 0.211 0.051 cDC L2
ENSG00000215883 CYB5RL 453757 sc-eQTL 4.51e-01 -0.137 0.181 0.051 cDC L2
ENSG00000243725 TTC4 -62068 sc-eQTL 3.32e-01 -0.21 0.216 0.051 cDC L2
ENSG00000058799 YIPF1 763995 sc-eQTL 8.85e-01 -0.0327 0.226 0.051 pDC L2
ENSG00000058804 NDC1 815330 sc-eQTL 4.31e-01 0.177 0.224 0.051 pDC L2
ENSG00000081870 HSPB11 707864 sc-eQTL 7.59e-01 0.0607 0.197 0.051 pDC L2
ENSG00000116133 DHCR24 -233402 sc-eQTL 2.80e-01 0.196 0.181 0.051 pDC L2
ENSG00000116205 TCEANC2 600209 sc-eQTL 2.73e-01 -0.239 0.217 0.051 pDC L2
ENSG00000116209 TMEM59 600289 sc-eQTL 2.57e-01 -0.197 0.173 0.051 pDC L2
ENSG00000116212 LRRC42 707708 sc-eQTL 6.65e-01 -0.0939 0.216 0.051 pDC L2
ENSG00000116221 MRPL37 469752 sc-eQTL 3.06e-01 0.237 0.23 0.051 pDC L2
ENSG00000157216 SSBP3 240314 sc-eQTL 6.46e-01 0.0944 0.205 0.051 pDC L2
ENSG00000162390 ACOT11 111536 sc-eQTL 2.85e-01 -0.0922 0.086 0.051 pDC L2
ENSG00000162402 USP24 -561571 sc-eQTL 3.35e-01 0.14 0.145 0.051 pDC L2
ENSG00000215883 CYB5RL 453757 sc-eQTL 5.50e-01 -0.119 0.199 0.051 pDC L2
ENSG00000243725 TTC4 -62068 sc-eQTL 5.78e-01 -0.128 0.23 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000157216 SSBP3 240314 eQTL 0.0155 0.0651 0.0268 0.00101 0.0 0.0643
ENSG00000198711 SSBP3-AS1 417353 eQTL 4.90e-03 -0.108 0.0383 0.003 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000198711 SSBP3-AS1 417353 7.3e-07 4.93e-07 3.08e-07 4.06e-07 9.93e-08 2.16e-07 5.49e-07 8.37e-08 5.3e-07 2.98e-07 3.66e-07 4.03e-07 7.36e-07 1.54e-07 1.48e-07 2.99e-07 2.77e-07 4.52e-07 5.26e-07 2.02e-07 2.86e-07 5.18e-07 3.7e-07 1.73e-07 8.33e-07 2.4e-07 4.34e-07 2.74e-07 3.58e-07 6.35e-07 2.93e-07 3.87e-08 5.78e-08 2.08e-07 3.36e-07 4.12e-07 3.67e-07 1.24e-07 6.01e-08 2.77e-08 8.42e-08 5.79e-07 6.28e-08 5.8e-09 1.75e-07 6.87e-08 1.28e-07 8.89e-08 1.12e-07