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Genes within 1Mb (chr1:54469913:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 580115 sc-eQTL 9.01e-01 -0.0247 0.199 0.054 cDC L2
ENSG00000058804 NDC1 631450 sc-eQTL 5.56e-01 -0.119 0.201 0.054 cDC L2
ENSG00000081870 HSPB11 523984 sc-eQTL 6.14e-01 -0.107 0.212 0.054 cDC L2
ENSG00000116133 DHCR24 -417282 sc-eQTL 7.59e-01 -0.0506 0.165 0.054 cDC L2
ENSG00000116205 TCEANC2 416329 sc-eQTL 7.41e-01 0.0642 0.194 0.054 cDC L2
ENSG00000116209 TMEM59 416409 sc-eQTL 6.46e-01 0.0758 0.165 0.054 cDC L2
ENSG00000116212 LRRC42 523828 sc-eQTL 7.50e-01 -0.0642 0.202 0.054 cDC L2
ENSG00000116221 MRPL37 285872 sc-eQTL 7.74e-01 0.0608 0.211 0.054 cDC L2
ENSG00000157216 SSBP3 56434 sc-eQTL 7.53e-02 0.345 0.193 0.054 cDC L2
ENSG00000162390 ACOT11 -72344 sc-eQTL 5.10e-01 -0.119 0.181 0.054 cDC L2
ENSG00000162402 USP24 -745451 sc-eQTL 1.53e-01 -0.29 0.202 0.054 cDC L2
ENSG00000215883 CYB5RL 269877 sc-eQTL 4.88e-01 -0.121 0.174 0.054 cDC L2
ENSG00000243725 TTC4 -245948 sc-eQTL 6.04e-01 -0.108 0.208 0.054 cDC L2
ENSG00000058799 YIPF1 580115 sc-eQTL 8.57e-01 0.0387 0.214 0.054 pDC L2
ENSG00000058804 NDC1 631450 sc-eQTL 6.12e-01 -0.109 0.214 0.054 pDC L2
ENSG00000081870 HSPB11 523984 sc-eQTL 7.39e-01 0.0626 0.188 0.054 pDC L2
ENSG00000116133 DHCR24 -417282 sc-eQTL 9.76e-01 -0.00518 0.173 0.054 pDC L2
ENSG00000116205 TCEANC2 416329 sc-eQTL 8.27e-01 0.0454 0.207 0.054 pDC L2
ENSG00000116209 TMEM59 416409 sc-eQTL 3.84e-01 -0.144 0.165 0.054 pDC L2
ENSG00000116212 LRRC42 523828 sc-eQTL 5.57e-01 0.121 0.206 0.054 pDC L2
ENSG00000116221 MRPL37 285872 sc-eQTL 1.51e-01 0.315 0.218 0.054 pDC L2
ENSG00000157216 SSBP3 56434 sc-eQTL 4.05e-01 -0.163 0.195 0.054 pDC L2
ENSG00000162390 ACOT11 -72344 sc-eQTL 4.21e-01 0.0661 0.0819 0.054 pDC L2
ENSG00000162402 USP24 -745451 sc-eQTL 5.61e-03 0.38 0.135 0.054 pDC L2
ENSG00000215883 CYB5RL 269877 sc-eQTL 5.50e-01 -0.113 0.189 0.054 pDC L2
ENSG00000243725 TTC4 -245948 sc-eQTL 8.12e-02 -0.38 0.217 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116205 TCEANC2 416329 eQTL 0.039 -0.0671 0.0325 0.0 0.0 0.0584
ENSG00000162390 ACOT11 -72344 eQTL 0.0167 -0.11 0.046 0.0 0.0 0.0584
ENSG00000184313 MROH7 -171841 eQTL 0.00463 -0.16 0.0562 0.00187 0.0 0.0584

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116205 TCEANC2 416329 1.29e-06 6.78e-07 2.91e-07 3.71e-07 1.11e-07 3.3e-07 7e-07 1.37e-07 5.74e-07 3.05e-07 9.47e-07 5.01e-07 1.28e-06 2.29e-07 4.01e-07 4.11e-07 7.47e-07 5.48e-07 3.84e-07 2.86e-07 3.99e-07 5.86e-07 4.4e-07 3.21e-07 1.47e-06 2.64e-07 4.55e-07 4.59e-07 5.9e-07 7.63e-07 4.39e-07 9.48e-08 1.32e-07 4.51e-07 3.29e-07 1.94e-07 3.26e-07 1.23e-07 8.45e-08 8.15e-09 1.45e-07 6.95e-07 1.23e-07 1.55e-08 1.91e-07 8.9e-08 1.6e-07 8.82e-08 8.38e-08