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Genes within 1Mb (chr1:53228346:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -661452 sc-eQTL 8.60e-01 -0.038 0.216 0.051 B_Activated L2
ENSG00000058804 NDC1 -610117 sc-eQTL 6.51e-01 -0.0918 0.203 0.051 B_Activated L2
ENSG00000081870 HSPB11 -717583 sc-eQTL 5.78e-01 -0.122 0.219 0.051 B_Activated L2
ENSG00000116157 GPX7 625975 sc-eQTL 7.80e-01 0.0617 0.22 0.051 B_Activated L2
ENSG00000116171 SCP2 301070 sc-eQTL 6.12e-01 -0.105 0.207 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -825238 sc-eQTL 4.70e-01 -0.145 0.2 0.051 B_Activated L2
ENSG00000116209 TMEM59 -825158 sc-eQTL 7.64e-01 0.0641 0.213 0.051 B_Activated L2
ENSG00000116212 LRRC42 -717739 sc-eQTL 7.33e-01 -0.0706 0.207 0.051 B_Activated L2
ENSG00000116221 MRPL37 -955695 sc-eQTL 5.27e-01 0.146 0.23 0.051 B_Activated L2
ENSG00000121310 ECHDC2 301134 sc-eQTL 4.07e-02 -0.475 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 674859 sc-eQTL 8.27e-01 0.0484 0.221 0.051 B_Activated L2
ENSG00000134748 PRPF38A 823744 sc-eQTL 3.06e-01 0.229 0.223 0.051 B_Activated L2
ENSG00000154222 CC2D1B 862153 sc-eQTL 1.62e-01 0.305 0.217 0.051 B_Activated L2
ENSG00000157184 CPT2 31554 sc-eQTL 7.43e-01 -0.0659 0.2 0.051 B_Activated L2
ENSG00000157193 LRP8 -100123 sc-eQTL 6.33e-01 0.0926 0.194 0.051 B_Activated L2
ENSG00000162377 COA7 529999 sc-eQTL 2.42e-01 -0.218 0.185 0.051 B_Activated L2
ENSG00000162378 ZYG11B 501893 sc-eQTL 2.03e-01 0.29 0.227 0.051 B_Activated L2
ENSG00000162384 CZIB 7712 sc-eQTL 3.22e-01 -0.223 0.224 0.051 B_Activated L2
ENSG00000162385 MAGOH -10172 sc-eQTL 5.78e-01 0.13 0.233 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 595178 sc-eQTL 3.37e-01 -0.193 0.2 0.051 B_Activated L2
ENSG00000215883 CYB5RL -971690 sc-eQTL 5.33e-01 -0.112 0.179 0.051 B_Activated L2
ENSG00000230138 LINC02812 -139899 sc-eQTL 9.95e-01 -0.00114 0.196 0.051 B_Activated L2
ENSG00000058799 YIPF1 -661452 sc-eQTL 2.90e-01 -0.172 0.162 0.052 PB L2
ENSG00000058804 NDC1 -610117 sc-eQTL 2.17e-01 0.299 0.241 0.052 PB L2
ENSG00000081870 HSPB11 -717583 sc-eQTL 4.45e-01 -0.156 0.203 0.052 PB L2
ENSG00000116157 GPX7 625975 sc-eQTL 7.25e-01 -0.0717 0.203 0.052 PB L2
ENSG00000116171 SCP2 301070 sc-eQTL 8.24e-01 0.0392 0.176 0.052 PB L2
ENSG00000116205 TCEANC2 -825238 sc-eQTL 2.58e-01 0.282 0.248 0.052 PB L2
ENSG00000116209 TMEM59 -825158 sc-eQTL 8.09e-01 -0.0252 0.104 0.052 PB L2
ENSG00000116212 LRRC42 -717739 sc-eQTL 5.13e-01 -0.154 0.235 0.052 PB L2
ENSG00000116221 MRPL37 -955695 sc-eQTL 2.70e-01 0.209 0.189 0.052 PB L2
ENSG00000121310 ECHDC2 301134 sc-eQTL 1.00e-02 0.667 0.255 0.052 PB L2
ENSG00000134744 TUT4 674859 sc-eQTL 8.45e-02 0.412 0.237 0.052 PB L2
ENSG00000134748 PRPF38A 823744 sc-eQTL 4.15e-01 0.185 0.226 0.052 PB L2
ENSG00000154222 CC2D1B 862153 sc-eQTL 6.40e-02 -0.459 0.245 0.052 PB L2
ENSG00000157184 CPT2 31554 sc-eQTL 7.28e-01 -0.0787 0.226 0.052 PB L2
ENSG00000157193 LRP8 -100123 sc-eQTL 9.71e-01 0.00881 0.239 0.052 PB L2
ENSG00000162377 COA7 529999 sc-eQTL 1.45e-01 -0.338 0.23 0.052 PB L2
ENSG00000162378 ZYG11B 501893 sc-eQTL 4.60e-01 0.188 0.254 0.052 PB L2
ENSG00000162384 CZIB 7712 sc-eQTL 5.04e-02 -0.484 0.245 0.052 PB L2
ENSG00000162385 MAGOH -10172 sc-eQTL 7.74e-01 0.0663 0.23 0.052 PB L2
ENSG00000182183 SHISAL2A 595178 sc-eQTL 4.46e-01 -0.161 0.211 0.052 PB L2
ENSG00000215883 CYB5RL -971690 sc-eQTL 5.72e-01 -0.146 0.257 0.052 PB L2
ENSG00000230138 LINC02812 -139899 sc-eQTL 8.29e-01 0.0402 0.185 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081870 HSPB11 -717583 eQTL 0.0207 0.0826 0.0356 0.00153 0.0 0.0579
ENSG00000085840 ORC1 823923 eQTL 0.00759 0.0859 0.0321 0.00231 0.0 0.0579
ENSG00000116157 GPX7 625975 eQTL 0.0162 0.124 0.0517 0.0 0.0 0.0579
ENSG00000157193 LRP8 -99724 eQTL 0.000564 0.146 0.0422 0.00266 0.0 0.0579
ENSG00000174348 PODN 166294 eQTL 0.00525 0.11 0.0393 0.0 0.0 0.0579

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081870 HSPB11 -717583 3.1e-07 1.67e-07 5.03e-08 2.26e-07 9.87e-08 8.89e-08 2.1e-07 5.75e-08 1.5e-07 6.75e-08 1.69e-07 1.22e-07 1.87e-07 7.95e-08 5.36e-08 7.97e-08 4.18e-08 1.64e-07 7.18e-08 5.35e-08 1.25e-07 1.42e-07 1.64e-07 2.68e-08 2.02e-07 1.23e-07 1.17e-07 1.12e-07 1.34e-07 1.06e-07 1.26e-07 3.55e-08 3.51e-08 8.89e-08 3.52e-08 3.28e-08 4.43e-08 8.72e-08 6.58e-08 8.34e-08 6e-08 1.55e-07 5.22e-08 7.39e-09 3.48e-08 1.68e-08 1.2e-07 1.95e-09 4.98e-08
ENSG00000157193 LRP8 -99724 6.01e-06 7.41e-06 7.85e-07 3.52e-06 1.64e-06 1.54e-06 6.54e-06 1.11e-06 4.94e-06 2.67e-06 7.19e-06 3.34e-06 8.85e-06 1.76e-06 1.11e-06 3.71e-06 1.94e-06 3.99e-06 1.45e-06 1.19e-06 3.09e-06 5.44e-06 4.63e-06 1.39e-06 7.95e-06 1.94e-06 2.22e-06 1.63e-06 4.47e-06 4.45e-06 2.69e-06 5.93e-07 8.13e-07 1.66e-06 2.13e-06 9.61e-07 9.99e-07 4.08e-07 1.23e-06 6.18e-07 2.23e-07 7.55e-06 6.89e-07 1.95e-07 5.96e-07 1.22e-06 9.33e-07 4.11e-07 3.35e-07
ENSG00000174348 PODN 166294 4.11e-06 4.18e-06 2.73e-07 1.96e-06 4.58e-07 7.56e-07 2.26e-06 6.75e-07 2.13e-06 1.01e-06 3.16e-06 1.44e-06 4.11e-06 1.47e-06 9.13e-07 1.7e-06 1.61e-06 2.2e-06 9.83e-07 1.36e-06 1.1e-06 3.29e-06 2.72e-06 9.81e-07 3.97e-06 1.26e-06 1.46e-06 1.77e-06 2.55e-06 1.98e-06 1.99e-06 3.03e-07 4e-07 1.22e-06 1.13e-06 6.4e-07 8.32e-07 4.49e-07 6.97e-07 3.46e-07 3.59e-07 4.1e-06 5.27e-07 1.41e-07 2.99e-07 3.14e-07 5.17e-07 2.22e-07 2.13e-07
ENSG00000226754 \N -10264 3.75e-05 3.37e-05 5.66e-06 1.55e-05 5.54e-06 1.41e-05 4.17e-05 4.99e-06 2.93e-05 1.56e-05 3.92e-05 1.58e-05 5.15e-05 1.42e-05 7.23e-06 1.88e-05 1.55e-05 2.41e-05 7.52e-06 6.89e-06 1.45e-05 3.34e-05 2.99e-05 8.57e-06 4.09e-05 7.7e-06 1.42e-05 1.28e-05 3.14e-05 2.23e-05 2e-05 1.54e-06 2.59e-06 7.1e-06 1.08e-05 4.91e-06 3.03e-06 3.19e-06 4.62e-06 3.56e-06 1.72e-06 4.03e-05 3.55e-06 2.85e-07 2.34e-06 4.06e-06 4.08e-06 1.58e-06 1.56e-06
ENSG00000280378 \N -806534 2.91e-07 1.5e-07 4.48e-08 2.05e-07 9.24e-08 8.33e-08 1.73e-07 5.48e-08 1.45e-07 5.67e-08 1.67e-07 1.08e-07 1.53e-07 7.13e-08 5.98e-08 7.49e-08 4.12e-08 1.44e-07 6.32e-08 4.8e-08 1.19e-07 1.25e-07 1.58e-07 2.64e-08 1.68e-07 1.25e-07 1.13e-07 1.01e-07 1.23e-07 1e-07 1.07e-07 2.93e-08 3.89e-08 8.11e-08 6.67e-08 3.62e-08 5.74e-08 9.36e-08 6.59e-08 6.43e-08 5.54e-08 1.46e-07 5.2e-08 1.24e-08 2.64e-08 1.87e-08 1.22e-07 1.88e-09 4.82e-08