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Genes within 1Mb (chr1:53205428:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -684370 sc-eQTL 8.60e-01 -0.038 0.216 0.051 B_Activated L2
ENSG00000058804 NDC1 -633035 sc-eQTL 6.51e-01 -0.0918 0.203 0.051 B_Activated L2
ENSG00000081870 HSPB11 -740501 sc-eQTL 5.78e-01 -0.122 0.219 0.051 B_Activated L2
ENSG00000116157 GPX7 603057 sc-eQTL 7.80e-01 0.0617 0.22 0.051 B_Activated L2
ENSG00000116171 SCP2 278152 sc-eQTL 6.12e-01 -0.105 0.207 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -848156 sc-eQTL 4.70e-01 -0.145 0.2 0.051 B_Activated L2
ENSG00000116209 TMEM59 -848076 sc-eQTL 7.64e-01 0.0641 0.213 0.051 B_Activated L2
ENSG00000116212 LRRC42 -740657 sc-eQTL 7.33e-01 -0.0706 0.207 0.051 B_Activated L2
ENSG00000116221 MRPL37 -978613 sc-eQTL 5.27e-01 0.146 0.23 0.051 B_Activated L2
ENSG00000121310 ECHDC2 278216 sc-eQTL 4.07e-02 -0.475 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 651941 sc-eQTL 8.27e-01 0.0484 0.221 0.051 B_Activated L2
ENSG00000134748 PRPF38A 800826 sc-eQTL 3.06e-01 0.229 0.223 0.051 B_Activated L2
ENSG00000154222 CC2D1B 839235 sc-eQTL 1.62e-01 0.305 0.217 0.051 B_Activated L2
ENSG00000157184 CPT2 8636 sc-eQTL 7.43e-01 -0.0659 0.2 0.051 B_Activated L2
ENSG00000157193 LRP8 -123041 sc-eQTL 6.33e-01 0.0926 0.194 0.051 B_Activated L2
ENSG00000162377 COA7 507081 sc-eQTL 2.42e-01 -0.218 0.185 0.051 B_Activated L2
ENSG00000162378 ZYG11B 478975 sc-eQTL 2.03e-01 0.29 0.227 0.051 B_Activated L2
ENSG00000162384 CZIB -15206 sc-eQTL 3.22e-01 -0.223 0.224 0.051 B_Activated L2
ENSG00000162385 MAGOH -33090 sc-eQTL 5.78e-01 0.13 0.233 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 572260 sc-eQTL 3.37e-01 -0.193 0.2 0.051 B_Activated L2
ENSG00000215883 CYB5RL -994608 sc-eQTL 5.33e-01 -0.112 0.179 0.051 B_Activated L2
ENSG00000230138 LINC02812 -162817 sc-eQTL 9.95e-01 -0.00114 0.196 0.051 B_Activated L2
ENSG00000058799 YIPF1 -684370 sc-eQTL 2.90e-01 -0.172 0.162 0.052 PB L2
ENSG00000058804 NDC1 -633035 sc-eQTL 2.17e-01 0.299 0.241 0.052 PB L2
ENSG00000081870 HSPB11 -740501 sc-eQTL 4.45e-01 -0.156 0.203 0.052 PB L2
ENSG00000116157 GPX7 603057 sc-eQTL 7.25e-01 -0.0717 0.203 0.052 PB L2
ENSG00000116171 SCP2 278152 sc-eQTL 8.24e-01 0.0392 0.176 0.052 PB L2
ENSG00000116205 TCEANC2 -848156 sc-eQTL 2.58e-01 0.282 0.248 0.052 PB L2
ENSG00000116209 TMEM59 -848076 sc-eQTL 8.09e-01 -0.0252 0.104 0.052 PB L2
ENSG00000116212 LRRC42 -740657 sc-eQTL 5.13e-01 -0.154 0.235 0.052 PB L2
ENSG00000116221 MRPL37 -978613 sc-eQTL 2.70e-01 0.209 0.189 0.052 PB L2
ENSG00000121310 ECHDC2 278216 sc-eQTL 1.00e-02 0.667 0.255 0.052 PB L2
ENSG00000134744 TUT4 651941 sc-eQTL 8.45e-02 0.412 0.237 0.052 PB L2
ENSG00000134748 PRPF38A 800826 sc-eQTL 4.15e-01 0.185 0.226 0.052 PB L2
ENSG00000154222 CC2D1B 839235 sc-eQTL 6.40e-02 -0.459 0.245 0.052 PB L2
ENSG00000157184 CPT2 8636 sc-eQTL 7.28e-01 -0.0787 0.226 0.052 PB L2
ENSG00000157193 LRP8 -123041 sc-eQTL 9.71e-01 0.00881 0.239 0.052 PB L2
ENSG00000162377 COA7 507081 sc-eQTL 1.45e-01 -0.338 0.23 0.052 PB L2
ENSG00000162378 ZYG11B 478975 sc-eQTL 4.60e-01 0.188 0.254 0.052 PB L2
ENSG00000162384 CZIB -15206 sc-eQTL 5.04e-02 -0.484 0.245 0.052 PB L2
ENSG00000162385 MAGOH -33090 sc-eQTL 7.74e-01 0.0663 0.23 0.052 PB L2
ENSG00000182183 SHISAL2A 572260 sc-eQTL 4.46e-01 -0.161 0.211 0.052 PB L2
ENSG00000215883 CYB5RL -994608 sc-eQTL 5.72e-01 -0.146 0.257 0.052 PB L2
ENSG00000230138 LINC02812 -162817 sc-eQTL 8.29e-01 0.0402 0.185 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081870 HSPB11 -740501 eQTL 0.0199 0.0825 0.0354 0.00157 0.0 0.0584
ENSG00000085840 ORC1 801005 eQTL 0.00527 0.089 0.0318 0.00275 0.0 0.0584
ENSG00000116157 GPX7 603057 eQTL 0.025 0.115 0.0513 0.0 0.0 0.0584
ENSG00000157193 LRP8 -122642 eQTL 0.000783 0.141 0.0419 0.00253 0.0 0.0584
ENSG00000174348 PODN 143376 eQTL 0.00821 0.103 0.039 0.0 0.0 0.0584

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081870 HSPB11 -740501 2.74e-07 1.19e-07 3.88e-08 1.84e-07 9.21e-08 9.8e-08 1.44e-07 5.4e-08 1.44e-07 4.74e-08 1.6e-07 8.55e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.94e-08 1.21e-07 5.39e-08 4.16e-08 1.08e-07 1.27e-07 1.34e-07 3.23e-08 1.37e-07 1.14e-07 1.07e-07 9.65e-08 1.05e-07 1.1e-07 9.91e-08 3.1e-08 3.66e-08 8.44e-08 8.21e-08 3.49e-08 4.99e-08 9.36e-08 6.54e-08 4.02e-08 5.42e-08 1.35e-07 5.22e-08 1.38e-08 4.67e-08 1.83e-08 1.22e-07 3.78e-09 4.9e-08
ENSG00000157193 LRP8 -122642 3.97e-06 3.13e-06 4.52e-07 1.92e-06 8e-07 8.44e-07 2.47e-06 9.05e-07 2.43e-06 1.43e-06 2.88e-06 2.09e-06 3.68e-06 1.41e-06 9.1e-07 2.06e-06 1.37e-06 2.13e-06 1.33e-06 1.07e-06 1.5e-06 3.37e-06 3.06e-06 1.66e-06 4.05e-06 1.28e-06 1.77e-06 1.72e-06 2.66e-06 2e-06 2.04e-06 5.43e-07 5.68e-07 1.33e-06 1.67e-06 9.1e-07 8.21e-07 4.09e-07 1.22e-06 4.34e-07 1.51e-07 3.88e-06 4.64e-07 2.07e-07 4.03e-07 3.64e-07 8.16e-07 2.32e-07 2.56e-07
ENSG00000174348 PODN 143376 3.06e-06 2.49e-06 3.08e-07 1.8e-06 4.76e-07 7.88e-07 1.8e-06 6.83e-07 1.85e-06 1e-06 2.11e-06 1.4e-06 3.35e-06 1.29e-06 8.32e-07 1.7e-06 1.01e-06 2.23e-06 6.65e-07 1.36e-06 1.1e-06 2.76e-06 2.13e-06 1.05e-06 3.42e-06 1.37e-06 1.35e-06 1.76e-06 1.87e-06 1.63e-06 1.49e-06 3.82e-07 5.05e-07 1.25e-06 1e-06 9.23e-07 7.24e-07 4.1e-07 9.25e-07 3.28e-07 3.04e-07 3.32e-06 5.87e-07 1.41e-07 3.13e-07 3.36e-07 8.02e-07 2.25e-07 1.55e-07
ENSG00000280378 \N -829452 2.67e-07 1.11e-07 3.72e-08 1.82e-07 8.83e-08 9.61e-08 1.42e-07 5.19e-08 1.4e-07 4.57e-08 1.59e-07 8.14e-08 1.33e-07 6.38e-08 5.84e-08 7.17e-08 3.88e-08 1.18e-07 5.21e-08 4.45e-08 1.05e-07 1.26e-07 1.32e-07 3.79e-08 1.33e-07 1.14e-07 1.08e-07 9.32e-08 1.03e-07 1.11e-07 9.73e-08 3.64e-08 3.16e-08 8.65e-08 8.96e-08 3.94e-08 5.02e-08 9.23e-08 7.2e-08 3.55e-08 4.37e-08 1.31e-07 4.7e-08 2.03e-08 5.43e-08 1.83e-08 1.19e-07 3.83e-09 4.81e-08