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Genes within 1Mb (chr1:53203498:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -686300 sc-eQTL 8.60e-01 -0.038 0.216 0.051 B_Activated L2
ENSG00000058804 NDC1 -634965 sc-eQTL 6.51e-01 -0.0918 0.203 0.051 B_Activated L2
ENSG00000081870 HSPB11 -742431 sc-eQTL 5.78e-01 -0.122 0.219 0.051 B_Activated L2
ENSG00000116157 GPX7 601127 sc-eQTL 7.80e-01 0.0617 0.22 0.051 B_Activated L2
ENSG00000116171 SCP2 276222 sc-eQTL 6.12e-01 -0.105 0.207 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -850086 sc-eQTL 4.70e-01 -0.145 0.2 0.051 B_Activated L2
ENSG00000116209 TMEM59 -850006 sc-eQTL 7.64e-01 0.0641 0.213 0.051 B_Activated L2
ENSG00000116212 LRRC42 -742587 sc-eQTL 7.33e-01 -0.0706 0.207 0.051 B_Activated L2
ENSG00000116221 MRPL37 -980543 sc-eQTL 5.27e-01 0.146 0.23 0.051 B_Activated L2
ENSG00000121310 ECHDC2 276286 sc-eQTL 4.07e-02 -0.475 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 650011 sc-eQTL 8.27e-01 0.0484 0.221 0.051 B_Activated L2
ENSG00000134748 PRPF38A 798896 sc-eQTL 3.06e-01 0.229 0.223 0.051 B_Activated L2
ENSG00000154222 CC2D1B 837305 sc-eQTL 1.62e-01 0.305 0.217 0.051 B_Activated L2
ENSG00000157184 CPT2 6706 sc-eQTL 7.43e-01 -0.0659 0.2 0.051 B_Activated L2
ENSG00000157193 LRP8 -124971 sc-eQTL 6.33e-01 0.0926 0.194 0.051 B_Activated L2
ENSG00000162377 COA7 505151 sc-eQTL 2.42e-01 -0.218 0.185 0.051 B_Activated L2
ENSG00000162378 ZYG11B 477045 sc-eQTL 2.03e-01 0.29 0.227 0.051 B_Activated L2
ENSG00000162384 CZIB -17136 sc-eQTL 3.22e-01 -0.223 0.224 0.051 B_Activated L2
ENSG00000162385 MAGOH -35020 sc-eQTL 5.78e-01 0.13 0.233 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 570330 sc-eQTL 3.37e-01 -0.193 0.2 0.051 B_Activated L2
ENSG00000215883 CYB5RL -996538 sc-eQTL 5.33e-01 -0.112 0.179 0.051 B_Activated L2
ENSG00000230138 LINC02812 -164747 sc-eQTL 9.95e-01 -0.00114 0.196 0.051 B_Activated L2
ENSG00000058799 YIPF1 -686300 sc-eQTL 2.90e-01 -0.172 0.162 0.052 PB L2
ENSG00000058804 NDC1 -634965 sc-eQTL 2.17e-01 0.299 0.241 0.052 PB L2
ENSG00000081870 HSPB11 -742431 sc-eQTL 4.45e-01 -0.156 0.203 0.052 PB L2
ENSG00000116157 GPX7 601127 sc-eQTL 7.25e-01 -0.0717 0.203 0.052 PB L2
ENSG00000116171 SCP2 276222 sc-eQTL 8.24e-01 0.0392 0.176 0.052 PB L2
ENSG00000116205 TCEANC2 -850086 sc-eQTL 2.58e-01 0.282 0.248 0.052 PB L2
ENSG00000116209 TMEM59 -850006 sc-eQTL 8.09e-01 -0.0252 0.104 0.052 PB L2
ENSG00000116212 LRRC42 -742587 sc-eQTL 5.13e-01 -0.154 0.235 0.052 PB L2
ENSG00000116221 MRPL37 -980543 sc-eQTL 2.70e-01 0.209 0.189 0.052 PB L2
ENSG00000121310 ECHDC2 276286 sc-eQTL 1.00e-02 0.667 0.255 0.052 PB L2
ENSG00000134744 TUT4 650011 sc-eQTL 8.45e-02 0.412 0.237 0.052 PB L2
ENSG00000134748 PRPF38A 798896 sc-eQTL 4.15e-01 0.185 0.226 0.052 PB L2
ENSG00000154222 CC2D1B 837305 sc-eQTL 6.40e-02 -0.459 0.245 0.052 PB L2
ENSG00000157184 CPT2 6706 sc-eQTL 7.28e-01 -0.0787 0.226 0.052 PB L2
ENSG00000157193 LRP8 -124971 sc-eQTL 9.71e-01 0.00881 0.239 0.052 PB L2
ENSG00000162377 COA7 505151 sc-eQTL 1.45e-01 -0.338 0.23 0.052 PB L2
ENSG00000162378 ZYG11B 477045 sc-eQTL 4.60e-01 0.188 0.254 0.052 PB L2
ENSG00000162384 CZIB -17136 sc-eQTL 5.04e-02 -0.484 0.245 0.052 PB L2
ENSG00000162385 MAGOH -35020 sc-eQTL 7.74e-01 0.0663 0.23 0.052 PB L2
ENSG00000182183 SHISAL2A 570330 sc-eQTL 4.46e-01 -0.161 0.211 0.052 PB L2
ENSG00000215883 CYB5RL -996538 sc-eQTL 5.72e-01 -0.146 0.257 0.052 PB L2
ENSG00000230138 LINC02812 -164747 sc-eQTL 8.29e-01 0.0402 0.185 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081870 HSPB11 -742431 eQTL 0.02 0.0824 0.0353 0.00157 0.0 0.0584
ENSG00000085840 ORC1 799075 eQTL 0.00525 0.089 0.0318 0.00275 0.0 0.0584
ENSG00000116157 GPX7 601127 eQTL 0.0252 0.115 0.0513 0.0 0.0 0.0584
ENSG00000157193 LRP8 -124572 eQTL 0.00079 0.141 0.0419 0.00253 0.0 0.0584
ENSG00000174348 PODN 141446 eQTL 0.00836 0.103 0.039 0.0 0.0 0.0584

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081870 HSPB11 -742431 2.56e-07 1.11e-07 3.28e-08 1.67e-07 1.02e-07 9.05e-08 1.36e-07 5.24e-08 1.32e-07 4.23e-08 1.59e-07 7.49e-08 1.2e-07 6.1e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.09e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.82e-08 2.74e-08 8e-08 9.69e-08 4.19e-08 5.26e-08 9.2e-08 8.22e-08 3.59e-08 2.99e-08 1.42e-07 4.36e-08 0.0 1.12e-07 1.78e-08 1.35e-07 4.5e-09 4.61e-08
ENSG00000157193 LRP8 -124572 2.71e-06 3.77e-06 7.79e-07 2.42e-06 4.38e-07 8.02e-07 2.48e-06 9.79e-07 3.07e-06 1.68e-06 3.36e-06 2.2e-06 3.54e-06 1.45e-06 1.22e-06 2.35e-06 2.06e-06 2.78e-06 1.3e-06 1.02e-06 2.67e-06 3.35e-06 3.32e-06 1.46e-06 4.78e-06 1.32e-06 1.92e-06 1.69e-06 3.18e-06 1.84e-06 1.99e-06 5.42e-07 7.66e-07 1.28e-06 2e-06 9.53e-07 1.09e-06 4.58e-07 1.05e-06 3.82e-07 6.7e-07 3.99e-06 4.2e-07 1.67e-07 3.48e-07 3.31e-07 1.05e-06 6.9e-07 2.56e-07
ENSG00000174348 PODN 141446 1.93e-06 2.54e-06 7.09e-07 1.92e-06 4.55e-07 8.45e-07 1.83e-06 8.31e-07 2.07e-06 1.13e-06 2.48e-06 1.41e-06 3.04e-06 1.42e-06 9.62e-07 1.69e-06 1.64e-06 2.15e-06 1.48e-06 1.05e-06 1.64e-06 2.8e-06 2.47e-06 9.89e-07 4.06e-06 1.03e-06 1.38e-06 1.43e-06 1.89e-06 1.59e-06 1.73e-06 4.18e-07 5.47e-07 1.08e-06 1.84e-06 9.92e-07 9.59e-07 4.91e-07 1.26e-06 3.98e-07 4.72e-07 3.29e-06 4.65e-07 1.64e-07 3.97e-07 3.24e-07 7.91e-07 4.27e-07 1.54e-07
ENSG00000280378 \N -831382 2.56e-07 1.11e-07 3.34e-08 1.65e-07 1.03e-07 9.05e-08 1.36e-07 5.24e-08 1.32e-07 3.99e-08 1.59e-07 7.49e-08 1.2e-07 6.1e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.09e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.43e-08 3.95e-08 2.74e-08 8.09e-08 1.01e-07 4.26e-08 4.95e-08 9.06e-08 8.14e-08 3.64e-08 3.44e-08 1.42e-07 4.34e-08 0.0 1.12e-07 1.8e-08 1.44e-07 4.6e-09 4.61e-08