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Genes within 1Mb (chr1:53198893:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -690905 sc-eQTL 8.60e-01 -0.038 0.216 0.051 B_Activated L2
ENSG00000058804 NDC1 -639570 sc-eQTL 6.51e-01 -0.0918 0.203 0.051 B_Activated L2
ENSG00000081870 HSPB11 -747036 sc-eQTL 5.78e-01 -0.122 0.219 0.051 B_Activated L2
ENSG00000116157 GPX7 596522 sc-eQTL 7.80e-01 0.0617 0.22 0.051 B_Activated L2
ENSG00000116171 SCP2 271617 sc-eQTL 6.12e-01 -0.105 0.207 0.051 B_Activated L2
ENSG00000116205 TCEANC2 -854691 sc-eQTL 4.70e-01 -0.145 0.2 0.051 B_Activated L2
ENSG00000116209 TMEM59 -854611 sc-eQTL 7.64e-01 0.0641 0.213 0.051 B_Activated L2
ENSG00000116212 LRRC42 -747192 sc-eQTL 7.33e-01 -0.0706 0.207 0.051 B_Activated L2
ENSG00000116221 MRPL37 -985148 sc-eQTL 5.27e-01 0.146 0.23 0.051 B_Activated L2
ENSG00000121310 ECHDC2 271681 sc-eQTL 4.07e-02 -0.475 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 645406 sc-eQTL 8.27e-01 0.0484 0.221 0.051 B_Activated L2
ENSG00000134748 PRPF38A 794291 sc-eQTL 3.06e-01 0.229 0.223 0.051 B_Activated L2
ENSG00000154222 CC2D1B 832700 sc-eQTL 1.62e-01 0.305 0.217 0.051 B_Activated L2
ENSG00000157184 CPT2 2101 sc-eQTL 7.43e-01 -0.0659 0.2 0.051 B_Activated L2
ENSG00000157193 LRP8 -129576 sc-eQTL 6.33e-01 0.0926 0.194 0.051 B_Activated L2
ENSG00000162377 COA7 500546 sc-eQTL 2.42e-01 -0.218 0.185 0.051 B_Activated L2
ENSG00000162378 ZYG11B 472440 sc-eQTL 2.03e-01 0.29 0.227 0.051 B_Activated L2
ENSG00000162384 CZIB -21741 sc-eQTL 3.22e-01 -0.223 0.224 0.051 B_Activated L2
ENSG00000162385 MAGOH -39625 sc-eQTL 5.78e-01 0.13 0.233 0.051 B_Activated L2
ENSG00000182183 SHISAL2A 565725 sc-eQTL 3.37e-01 -0.193 0.2 0.051 B_Activated L2
ENSG00000230138 LINC02812 -169352 sc-eQTL 9.95e-01 -0.00114 0.196 0.051 B_Activated L2
ENSG00000058799 YIPF1 -690905 sc-eQTL 2.90e-01 -0.172 0.162 0.052 PB L2
ENSG00000058804 NDC1 -639570 sc-eQTL 2.17e-01 0.299 0.241 0.052 PB L2
ENSG00000081870 HSPB11 -747036 sc-eQTL 4.45e-01 -0.156 0.203 0.052 PB L2
ENSG00000116157 GPX7 596522 sc-eQTL 7.25e-01 -0.0717 0.203 0.052 PB L2
ENSG00000116171 SCP2 271617 sc-eQTL 8.24e-01 0.0392 0.176 0.052 PB L2
ENSG00000116205 TCEANC2 -854691 sc-eQTL 2.58e-01 0.282 0.248 0.052 PB L2
ENSG00000116209 TMEM59 -854611 sc-eQTL 8.09e-01 -0.0252 0.104 0.052 PB L2
ENSG00000116212 LRRC42 -747192 sc-eQTL 5.13e-01 -0.154 0.235 0.052 PB L2
ENSG00000116221 MRPL37 -985148 sc-eQTL 2.70e-01 0.209 0.189 0.052 PB L2
ENSG00000121310 ECHDC2 271681 sc-eQTL 1.00e-02 0.667 0.255 0.052 PB L2
ENSG00000134744 TUT4 645406 sc-eQTL 8.45e-02 0.412 0.237 0.052 PB L2
ENSG00000134748 PRPF38A 794291 sc-eQTL 4.15e-01 0.185 0.226 0.052 PB L2
ENSG00000154222 CC2D1B 832700 sc-eQTL 6.40e-02 -0.459 0.245 0.052 PB L2
ENSG00000157184 CPT2 2101 sc-eQTL 7.28e-01 -0.0787 0.226 0.052 PB L2
ENSG00000157193 LRP8 -129576 sc-eQTL 9.71e-01 0.00881 0.239 0.052 PB L2
ENSG00000162377 COA7 500546 sc-eQTL 1.45e-01 -0.338 0.23 0.052 PB L2
ENSG00000162378 ZYG11B 472440 sc-eQTL 4.60e-01 0.188 0.254 0.052 PB L2
ENSG00000162384 CZIB -21741 sc-eQTL 5.04e-02 -0.484 0.245 0.052 PB L2
ENSG00000162385 MAGOH -39625 sc-eQTL 7.74e-01 0.0663 0.23 0.052 PB L2
ENSG00000182183 SHISAL2A 565725 sc-eQTL 4.46e-01 -0.161 0.211 0.052 PB L2
ENSG00000230138 LINC02812 -169352 sc-eQTL 8.29e-01 0.0402 0.185 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000081870 HSPB11 -747036 eQTL 0.0214 0.0816 0.0354 0.00151 0.0 0.0584
ENSG00000085840 ORC1 794470 eQTL 0.00531 0.0891 0.0319 0.00273 0.0 0.0584
ENSG00000116157 GPX7 596522 eQTL 0.0234 0.117 0.0514 0.0 0.0 0.0584
ENSG00000157193 LRP8 -129177 eQTL 0.000966 0.139 0.0419 0.00228 0.0 0.0584
ENSG00000174348 PODN 136841 eQTL 0.00882 0.103 0.0391 0.0 0.0 0.0584

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081870 HSPB11 -747036 3.27e-07 2.56e-07 6.45e-08 3.62e-07 1.05e-07 1.25e-07 3.11e-07 6.75e-08 2.01e-07 1.11e-07 3.21e-07 1.59e-07 4.34e-07 9.18e-08 6.53e-08 9.11e-08 9.3e-08 2.21e-07 8.93e-08 8.25e-08 1.23e-07 2.07e-07 2.11e-07 4.34e-08 3.98e-07 1.51e-07 1.29e-07 1.68e-07 1.47e-07 2.52e-07 1.88e-07 6.68e-08 4.93e-08 1.01e-07 1.95e-07 4.77e-08 1.09e-07 5.92e-08 4.99e-08 5.54e-08 4.07e-08 2.19e-07 3.4e-08 2.02e-08 3.61e-08 8.24e-09 7.12e-08 0.0 4.83e-08
ENSG00000157193 LRP8 -129177 4.54e-06 7.87e-06 7.84e-07 3.85e-06 1.2e-06 1.57e-06 7.51e-06 1.14e-06 4.76e-06 2.5e-06 8.01e-06 2.86e-06 1.07e-05 2.44e-06 1.31e-06 3.13e-06 2.43e-06 3.69e-06 1.54e-06 1.55e-06 2.91e-06 5.26e-06 4.64e-06 1.42e-06 8.54e-06 1.74e-06 2.41e-06 1.57e-06 4.51e-06 5.55e-06 2.93e-06 5.93e-07 6.11e-07 1.44e-06 2.14e-06 9.43e-07 9.76e-07 4.24e-07 9.46e-07 5.33e-07 2.66e-07 7.12e-06 3.65e-07 1.49e-07 3.65e-07 7.78e-07 7.12e-07 2.41e-07 3.34e-07
ENSG00000174348 PODN 136841 4.79e-06 7.1e-06 7.57e-07 3.5e-06 1.06e-06 1.57e-06 6.45e-06 1.18e-06 4.48e-06 2.53e-06 7.57e-06 3.2e-06 1.01e-05 2.18e-06 1.43e-06 2.78e-06 2e-06 3.57e-06 1.43e-06 1.4e-06 2.65e-06 4.96e-06 4.49e-06 1.36e-06 8.28e-06 1.48e-06 2.49e-06 1.64e-06 4.44e-06 5.03e-06 2.56e-06 5.43e-07 7.32e-07 1.75e-06 1.97e-06 8.53e-07 1e-06 4.77e-07 1.06e-06 4.88e-07 2.08e-07 6.32e-06 4.02e-07 1.52e-07 3.45e-07 6.75e-07 7.1e-07 2.38e-07 2.55e-07
ENSG00000280378 \N -835987 3.02e-07 1.76e-07 5.91e-08 2.92e-07 1.03e-07 7.75e-08 2.4e-07 5.82e-08 1.75e-07 9.35e-08 2.07e-07 1.23e-07 3.18e-07 8.54e-08 5.36e-08 7.89e-08 6.17e-08 1.77e-07 7.42e-08 8.31e-08 1.22e-07 1.76e-07 1.73e-07 4.17e-08 2.74e-07 1.31e-07 1.2e-07 1.47e-07 1.39e-07 1.69e-07 1.43e-07 5.24e-08 4.86e-08 9.72e-08 9.25e-08 3.24e-08 9.52e-08 7.51e-08 6.29e-08 7.65e-08 4.53e-08 1.6e-07 3.4e-08 1.79e-08 3.32e-08 6.83e-09 8.46e-08 2.02e-09 4.82e-08