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Genes within 1Mb (chr1:52028362:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 149425 sc-eQTL 8.23e-01 0.0482 0.215 0.05 CD4_CTL L2
ENSG00000085832 EPS15 509096 sc-eQTL 9.00e-01 0.0241 0.191 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -574009 sc-eQTL 3.02e-02 0.456 0.209 0.05 CD4_CTL L2
ENSG00000116171 SCP2 -898914 sc-eQTL 4.48e-01 -0.13 0.171 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 451183 sc-eQTL 5.75e-01 0.125 0.222 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -27809 sc-eQTL 8.91e-01 -0.0286 0.208 0.05 CD4_CTL L2
ENSG00000121310 ECHDC2 -898850 sc-eQTL 9.62e-01 -0.0103 0.214 0.05 CD4_CTL L2
ENSG00000123091 RNF11 792089 sc-eQTL 9.48e-01 0.013 0.201 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -27837 sc-eQTL 4.17e-01 0.172 0.211 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -525125 sc-eQTL 6.07e-01 -0.102 0.199 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -376240 sc-eQTL 1.27e-01 0.323 0.211 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -337831 sc-eQTL 3.42e-01 -0.201 0.211 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -113732 sc-eQTL 2.53e-01 -0.222 0.194 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -698091 sc-eQTL 1.04e-01 0.338 0.207 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -604806 sc-eQTL 2.70e-01 0.208 0.188 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -5448 sc-eQTL 5.11e-02 -0.397 0.202 0.05 CD4_CTL L2
ENSG00000078618 NRDC 149425 sc-eQTL 5.56e-01 0.122 0.207 0.051 CD8_TCM L2
ENSG00000085832 EPS15 509096 sc-eQTL 3.55e-01 -0.189 0.204 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -574009 sc-eQTL 2.43e-02 0.49 0.216 0.051 CD8_TCM L2
ENSG00000116171 SCP2 -898914 sc-eQTL 3.26e-01 0.185 0.188 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 451183 sc-eQTL 9.07e-01 -0.0259 0.222 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -27809 sc-eQTL 6.30e-01 0.0969 0.201 0.051 CD8_TCM L2
ENSG00000121310 ECHDC2 -898850 sc-eQTL 1.47e-02 0.525 0.213 0.051 CD8_TCM L2
ENSG00000123091 RNF11 792089 sc-eQTL 6.66e-01 0.0893 0.206 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -27837 sc-eQTL 2.77e-01 -0.223 0.205 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -525125 sc-eQTL 4.84e-01 0.141 0.201 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -376240 sc-eQTL 4.36e-01 -0.155 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -337831 sc-eQTL 9.53e-01 -0.0119 0.201 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -113732 sc-eQTL 1.02e-01 0.335 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -698091 sc-eQTL 5.20e-01 -0.13 0.201 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -604806 sc-eQTL 7.92e-01 0.0524 0.198 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -5448 sc-eQTL 7.23e-01 -0.0747 0.211 0.051 CD8_TCM L2
ENSG00000078618 NRDC 149425 sc-eQTL 8.55e-01 0.0393 0.215 0.05 CD8_TEM L2
ENSG00000085832 EPS15 509096 sc-eQTL 1.42e-01 0.287 0.195 0.05 CD8_TEM L2
ENSG00000116157 GPX7 -574009 sc-eQTL 5.98e-01 0.113 0.215 0.05 CD8_TEM L2
ENSG00000116171 SCP2 -898914 sc-eQTL 9.83e-01 -0.00389 0.183 0.05 CD8_TEM L2
ENSG00000117859 OSBPL9 451183 sc-eQTL 9.67e-01 -0.00956 0.23 0.05 CD8_TEM L2
ENSG00000117862 TXNDC12 -27809 sc-eQTL 9.76e-01 0.00636 0.208 0.05 CD8_TEM L2
ENSG00000121310 ECHDC2 -898850 sc-eQTL 7.69e-01 0.0681 0.231 0.05 CD8_TEM L2
ENSG00000123091 RNF11 792089 sc-eQTL 6.92e-01 0.0876 0.221 0.05 CD8_TEM L2
ENSG00000134717 BTF3L4 -27837 sc-eQTL 4.84e-01 0.157 0.225 0.05 CD8_TEM L2
ENSG00000134744 TUT4 -525125 sc-eQTL 7.74e-01 0.0594 0.206 0.05 CD8_TEM L2
ENSG00000134748 PRPF38A -376240 sc-eQTL 4.75e-01 0.154 0.215 0.05 CD8_TEM L2
ENSG00000154222 CC2D1B -337831 sc-eQTL 5.91e-01 0.115 0.214 0.05 CD8_TEM L2
ENSG00000157077 ZFYVE9 -113732 sc-eQTL 9.28e-01 -0.0177 0.194 0.05 CD8_TEM L2
ENSG00000162378 ZYG11B -698091 sc-eQTL 6.07e-01 -0.112 0.218 0.05 CD8_TEM L2
ENSG00000182183 SHISAL2A -604806 sc-eQTL 5.22e-01 0.132 0.206 0.05 CD8_TEM L2
ENSG00000198841 KTI12 -5448 sc-eQTL 5.24e-01 0.137 0.215 0.05 CD8_TEM L2
ENSG00000078618 NRDC 149425 sc-eQTL 7.56e-02 0.319 0.178 0.059 PB L2
ENSG00000085832 EPS15 509096 sc-eQTL 7.77e-01 -0.0733 0.258 0.059 PB L2
ENSG00000116157 GPX7 -574009 sc-eQTL 2.55e-02 0.444 0.196 0.059 PB L2
ENSG00000116171 SCP2 -898914 sc-eQTL 4.43e-01 0.133 0.173 0.059 PB L2
ENSG00000117859 OSBPL9 451183 sc-eQTL 2.33e-01 -0.256 0.214 0.059 PB L2
ENSG00000117862 TXNDC12 -27809 sc-eQTL 5.59e-01 0.0934 0.159 0.059 PB L2
ENSG00000121310 ECHDC2 -898850 sc-eQTL 4.15e-01 0.211 0.258 0.059 PB L2
ENSG00000123091 RNF11 792089 sc-eQTL 3.61e-01 0.231 0.251 0.059 PB L2
ENSG00000134717 BTF3L4 -27837 sc-eQTL 2.78e-01 -0.279 0.256 0.059 PB L2
ENSG00000134744 TUT4 -525125 sc-eQTL 6.47e-01 0.109 0.236 0.059 PB L2
ENSG00000134748 PRPF38A -376240 sc-eQTL 4.39e-01 0.173 0.223 0.059 PB L2
ENSG00000154222 CC2D1B -337831 sc-eQTL 3.27e-02 0.52 0.241 0.059 PB L2
ENSG00000162377 COA7 -669985 sc-eQTL 4.57e-01 -0.171 0.228 0.059 PB L2
ENSG00000162378 ZYG11B -698091 sc-eQTL 5.06e-01 0.167 0.25 0.059 PB L2
ENSG00000182183 SHISAL2A -604806 sc-eQTL 9.85e-01 -0.00402 0.208 0.059 PB L2
ENSG00000198841 KTI12 -5448 sc-eQTL 7.33e-01 -0.0806 0.235 0.059 PB L2
ENSG00000078618 NRDC 149425 sc-eQTL 6.28e-01 0.0958 0.198 0.054 cDC L2
ENSG00000085831 TTC39A 683246 sc-eQTL 6.32e-01 -0.031 0.0645 0.054 cDC L2
ENSG00000085832 EPS15 509096 sc-eQTL 7.37e-01 0.0742 0.221 0.054 cDC L2
ENSG00000116157 GPX7 -574009 sc-eQTL 2.04e-02 0.422 0.18 0.054 cDC L2
ENSG00000116171 SCP2 -898914 sc-eQTL 1.72e-01 0.245 0.179 0.054 cDC L2
ENSG00000117859 OSBPL9 451183 sc-eQTL 2.13e-01 0.252 0.202 0.054 cDC L2
ENSG00000117862 TXNDC12 -27809 sc-eQTL 3.74e-01 0.172 0.193 0.054 cDC L2
ENSG00000121310 ECHDC2 -898850 sc-eQTL 5.10e-02 0.405 0.206 0.054 cDC L2
ENSG00000123091 RNF11 792089 sc-eQTL 3.14e-01 0.217 0.215 0.054 cDC L2
ENSG00000134717 BTF3L4 -27837 sc-eQTL 9.79e-01 0.0051 0.195 0.054 cDC L2
ENSG00000134744 TUT4 -525125 sc-eQTL 9.84e-02 0.358 0.215 0.054 cDC L2
ENSG00000134748 PRPF38A -376240 sc-eQTL 7.02e-01 -0.0765 0.2 0.054 cDC L2
ENSG00000154222 CC2D1B -337831 sc-eQTL 8.62e-01 0.0378 0.217 0.054 cDC L2
ENSG00000162377 COA7 -669985 sc-eQTL 5.13e-01 -0.135 0.206 0.054 cDC L2
ENSG00000162378 ZYG11B -698091 sc-eQTL 5.27e-02 0.419 0.215 0.054 cDC L2
ENSG00000198841 KTI12 -5448 sc-eQTL 9.98e-01 0.000387 0.204 0.054 cDC L2
ENSG00000078618 NRDC 149425 sc-eQTL 5.14e-01 -0.124 0.189 0.051 pDC L2
ENSG00000085831 TTC39A 683246 sc-eQTL 9.02e-02 -0.308 0.181 0.051 pDC L2
ENSG00000085832 EPS15 509096 sc-eQTL 2.70e-01 -0.259 0.234 0.051 pDC L2
ENSG00000116157 GPX7 -574009 sc-eQTL 3.22e-01 -0.175 0.176 0.051 pDC L2
ENSG00000116171 SCP2 -898914 sc-eQTL 7.98e-01 -0.0542 0.212 0.051 pDC L2
ENSG00000117859 OSBPL9 451183 sc-eQTL 9.72e-02 0.377 0.226 0.051 pDC L2
ENSG00000117862 TXNDC12 -27809 sc-eQTL 9.94e-01 -0.00184 0.228 0.051 pDC L2
ENSG00000121310 ECHDC2 -898850 sc-eQTL 7.37e-02 0.408 0.227 0.051 pDC L2
ENSG00000123091 RNF11 792089 sc-eQTL 9.67e-01 -0.00696 0.169 0.051 pDC L2
ENSG00000134717 BTF3L4 -27837 sc-eQTL 1.17e-01 -0.349 0.222 0.051 pDC L2
ENSG00000134744 TUT4 -525125 sc-eQTL 4.23e-01 -0.152 0.189 0.051 pDC L2
ENSG00000134748 PRPF38A -376240 sc-eQTL 6.91e-01 0.0971 0.244 0.051 pDC L2
ENSG00000154222 CC2D1B -337831 sc-eQTL 8.08e-01 0.0567 0.233 0.051 pDC L2
ENSG00000162377 COA7 -669985 sc-eQTL 5.15e-01 -0.123 0.188 0.051 pDC L2
ENSG00000162378 ZYG11B -698091 sc-eQTL 8.47e-01 -0.0437 0.227 0.051 pDC L2
ENSG00000198841 KTI12 -5448 sc-eQTL 9.70e-01 -0.00827 0.216 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 149425 eQTL 0.00202 -0.0584 0.0189 0.0 0.0 0.0427
ENSG00000116157 GPX7 -574009 eQTL 7.1e-13 0.43 0.059 0.0 0.0 0.0427
ENSG00000134748 PRPF38A -376240 eQTL 2.92e-02 0.1 0.0458 0.00117 0.0 0.0427
ENSG00000154222 CC2D1B -337831 eQTL 2.3e-14 0.32 0.0413 0.0 0.0 0.0427
ENSG00000182183 SHISAL2A -604806 eQTL 0.0322 0.0888 0.0414 0.0 0.0 0.0427
ENSG00000266993 AL050343.1 234428 eQTL 0.000404 -0.186 0.0525 0.0 0.0 0.0427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 149425 1.43e-06 1.58e-06 3.08e-07 1.22e-06 4.27e-07 6.02e-07 1.48e-06 4.54e-07 1.7e-06 7.14e-07 1.84e-06 1.18e-06 2.68e-06 5.86e-07 5.01e-07 1.51e-06 8.89e-07 1.1e-06 5.46e-07 5.11e-07 6.15e-07 1.92e-06 1.35e-06 5.77e-07 2.59e-06 7.53e-07 1.1e-06 9.19e-07 1.64e-06 1.25e-06 8.65e-07 2.8e-07 2.55e-07 6.64e-07 7.4e-07 5.24e-07 6.41e-07 2.21e-07 5.01e-07 9.13e-08 1.22e-07 2.79e-06 5.58e-07 1.95e-07 3.49e-07 2.14e-07 2.45e-07 2.25e-07 2.55e-07
ENSG00000116157 GPX7 -574009 2.66e-07 1.01e-07 4.47e-08 1.78e-07 9.02e-08 9.13e-08 1.39e-07 5.21e-08 1.37e-07 4.24e-08 1.63e-07 8.03e-08 1.26e-07 6.21e-08 5.4e-08 7.5e-08 4.94e-08 1.14e-07 5.19e-08 3.74e-08 1.04e-07 1.33e-07 1.29e-07 4.67e-08 1.31e-07 1.15e-07 1.12e-07 8.7e-08 9.97e-08 1.09e-07 9.75e-08 3.68e-08 2.74e-08 8.25e-08 9.13e-08 3.96e-08 5.06e-08 9.25e-08 8.19e-08 3.59e-08 3.61e-08 1.36e-07 5.27e-08 2.03e-08 5.15e-08 1.72e-08 1.24e-07 3.79e-09 4.9e-08
ENSG00000154222 CC2D1B -337831 2.91e-07 1.51e-07 8.99e-08 2.22e-07 1.02e-07 9.91e-08 1.81e-07 5.66e-08 1.5e-07 7.6e-08 1.63e-07 1.23e-07 2.29e-07 8.07e-08 5.69e-08 1.14e-07 4.31e-08 2.15e-07 7.11e-08 4.92e-08 1.39e-07 1.42e-07 1.58e-07 3.07e-08 2.36e-07 1.31e-07 1.31e-07 1.06e-07 1.34e-07 1.03e-07 1.09e-07 4.47e-08 3.21e-08 9.76e-08 3.02e-08 3.3e-08 5.1e-08 8.68e-08 6.3e-08 3.76e-08 5.14e-08 1.62e-07 5.38e-08 2.62e-08 7.89e-08 1.71e-08 8.98e-08 3.35e-09 6.23e-08
ENSG00000266993 AL050343.1 234428 8.15e-07 6.04e-07 2.88e-07 4.04e-07 1.12e-07 1.57e-07 5.28e-07 1.21e-07 4.61e-07 2.62e-07 4.39e-07 4.24e-07 9.77e-07 1.58e-07 2.35e-07 5.75e-07 2.11e-07 4.27e-07 3.01e-07 1.24e-07 2.26e-07 3.71e-07 3.84e-07 1.29e-07 1.28e-06 2.54e-07 4.37e-07 2.24e-07 3.58e-07 2.26e-07 3.43e-07 5.71e-08 4.74e-08 1.38e-07 3.4e-07 1.48e-07 8.28e-08 7.75e-08 4.55e-08 8.2e-08 5.04e-08 7.45e-07 9.55e-08 1.38e-07 1.93e-07 1.27e-08 1.07e-07 7.69e-08 2.46e-07