Genes within 1Mb (chr12:111974216:G:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 131988 eQTL 2.91e-38 -0.189 0.0139 0.0 0.0 0.361
ENSG00000089169 RPH3A -596164 eQTL 5.39e-04 -0.105 0.0302 0.0 0.0 0.361
ENSG00000089234 BRAP 288260 pQTL 5.38e-03 -0.0411 0.0147 0.0 0.0 0.37
ENSG00000089248 ERP29 -39132 eQTL 1.81e-04 -0.0497 0.0132 0.0 0.0 0.361
ENSG00000111249 CUX2 940051 eQTL 3.81e-02 0.0531 0.0256 0.00117 0.0 0.361
ENSG00000111252 SH2B3 568268 pQTL 1.79e-04 -0.0546 0.0145 0.0 0.0 0.37
ENSG00000111271 ACAD10 288152 eQTL 1.08e-02 -0.0384 0.015 0.00117 0.0 0.361
ENSG00000111275 ALDH2 207329 pQTL 4.07e-07 -0.132 0.0259 0.0 0.0 0.37
ENSG00000111300 NAA25 -134580 eQTL 3.16e-16 -0.0983 0.0118 0.0 0.0 0.361
ENSG00000135148 TRAFD1 -151329 eQTL 3.09e-02 -0.0226 0.0105 0.00108 0.0 0.361
ENSG00000173064 HECTD4 -408223 eQTL 1.30e-88 0.262 0.0118 0.0 0.0 0.361
ENSG00000179295 PTPN11 -444135 eQTL 6.09e-10 -0.0889 0.0142 0.0 0.0 0.361
ENSG00000198324 PHETA1 605095 eQTL 3.71e-14 0.145 0.0188 0.0 0.0011 0.361
ENSG00000204842 ATXN2 374540 eQTL 3.60e-05 0.0563 0.0136 0.0 0.0 0.361
ENSG00000213152 RPL7AP60 -328447 eQTL 6.02e-05 -0.152 0.0378 0.00163 0.00173 0.361
ENSG00000234608 MAPKAPK5-AS1 131314 eQTL 1.39e-18 -0.115 0.0128 0.00157 0.00275 0.361
ENSG00000257595 LINC02356 604934 eQTL 1.85e-02 0.0776 0.0329 0.0 0.0 0.361


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 131988 3.99e-06 3.92e-06 6.03e-07 1.96e-06 8.63e-07 7.43e-07 2.52e-06 1.03e-06 3.03e-06 1.65e-06 4.08e-06 2.39e-06 6.44e-06 1.24e-06 1.07e-06 2.01e-06 1.59e-06 2.33e-06 1.54e-06 1.2e-06 1.73e-06 3.98e-06 3.37e-06 1.82e-06 4.66e-06 1.21e-06 1.61e-06 1.38e-06 3.87e-06 3.21e-06 2.01e-06 4.33e-07 8.14e-07 1.59e-06 1.82e-06 9.05e-07 9.24e-07 4.22e-07 1.22e-06 3.64e-07 2.23e-07 4.54e-06 6.51e-07 1.93e-07 3.51e-07 3.64e-07 8.68e-07 2.33e-07 1.78e-07
ENSG00000089169 RPH3A -596164 3.77e-07 1.92e-07 6.55e-08 2.27e-07 1.1e-07 7.75e-08 2.86e-07 5.84e-08 1.96e-07 1.11e-07 2.47e-07 1.57e-07 3.48e-07 8.55e-08 6.93e-08 1.01e-07 5.73e-08 2.56e-07 7.36e-08 6.16e-08 1.24e-07 2.06e-07 1.81e-07 4.07e-08 2.86e-07 1.71e-07 1.29e-07 1.48e-07 1.48e-07 1.39e-07 1.52e-07 3.68e-08 3.8e-08 9.72e-08 5.16e-08 3.24e-08 4.47e-08 8.37e-08 6.5e-08 5.35e-08 6.14e-08 2.43e-07 4.83e-08 7.39e-09 3.36e-08 6.53e-09 7.83e-08 1.98e-09 4.67e-08
ENSG00000089248 ERP29 -39132 9.86e-06 1.14e-05 1.93e-06 6.16e-06 2.35e-06 4.75e-06 1.21e-05 2.14e-06 1.02e-05 5.58e-06 1.39e-05 5.9e-06 1.82e-05 3.8e-06 3.46e-06 6.64e-06 5.59e-06 8.94e-06 2.97e-06 3.04e-06 6.26e-06 1.07e-05 9.94e-06 3.69e-06 1.72e-05 4.48e-06 5.56e-06 4.92e-06 1.25e-05 1.12e-05 6.58e-06 9.91e-07 1.24e-06 3.61e-06 4.89e-06 2.82e-06 1.79e-06 1.99e-06 2.06e-06 1.1e-06 1.11e-06 1.37e-05 1.38e-06 2.5e-07 9.29e-07 1.71e-06 1.82e-06 6.86e-07 4.58e-07
ENSG00000111249 CUX2 940051 2.74e-07 1.3e-07 3.69e-08 1.82e-07 9.16e-08 9.65e-08 1.49e-07 5.37e-08 1.45e-07 4.94e-08 1.54e-07 8.68e-08 1.47e-07 6.56e-08 6.02e-08 7.53e-08 3.87e-08 1.27e-07 5.39e-08 4.42e-08 1.08e-07 1.27e-07 1.39e-07 3.68e-08 1.46e-07 1.14e-07 1.06e-07 9.61e-08 1.12e-07 1.07e-07 9.92e-08 3.92e-08 3.16e-08 8.55e-08 8.74e-08 3.93e-08 5.01e-08 9.65e-08 7.23e-08 3.55e-08 3.89e-08 1.4e-07 4.33e-08 2.88e-08 5.59e-08 1.83e-08 1.22e-07 3.95e-09 4.79e-08
ENSG00000111300 NAA25 -134580 4e-06 3.82e-06 5.8e-07 1.95e-06 8.57e-07 8.07e-07 2.37e-06 9.87e-07 2.81e-06 1.46e-06 3.8e-06 2.13e-06 6.2e-06 1.19e-06 9.69e-07 2.06e-06 1.56e-06 2.3e-06 1.48e-06 1.2e-06 1.68e-06 3.73e-06 3.24e-06 1.8e-06 4.68e-06 1.16e-06 1.6e-06 1.46e-06 3.8e-06 3.08e-06 2.05e-06 3.82e-07 7.34e-07 1.45e-06 1.68e-06 9.01e-07 9.07e-07 4.2e-07 1.28e-06 3.99e-07 2.08e-07 5.01e-06 5.78e-07 1.95e-07 3.65e-07 3.62e-07 8.95e-07 2.02e-07 1.77e-07
ENSG00000173064 HECTD4 -408223 9.83e-07 6.56e-07 1.04e-07 3.81e-07 1.07e-07 2.08e-07 6.02e-07 1.54e-07 5.88e-07 2.82e-07 9.73e-07 4.31e-07 9.97e-07 1.52e-07 2.86e-07 2.89e-07 3.93e-07 4.39e-07 2.13e-07 1.51e-07 2.01e-07 4.99e-07 4.12e-07 1.73e-07 1.02e-06 2.71e-07 2.72e-07 3.24e-07 4.9e-07 6.19e-07 3.77e-07 7.5e-08 5.39e-08 1.52e-07 3.08e-07 1.18e-07 1.09e-07 7.51e-08 4.44e-08 5.77e-08 8.15e-08 7.22e-07 2.75e-08 1.79e-08 1.14e-07 1.27e-08 1.04e-07 3.35e-09 5.93e-08
ENSG00000179295 PTPN11 -444135 8.25e-07 5.67e-07 1.05e-07 3.58e-07 9.72e-08 1.71e-07 5.31e-07 1.11e-07 4.26e-07 2.28e-07 7.44e-07 3.68e-07 8.34e-07 1.1e-07 2.15e-07 2.18e-07 2.77e-07 4.11e-07 1.62e-07 1.08e-07 1.89e-07 3.8e-07 3.3e-07 1.25e-07 7.71e-07 2.4e-07 2.24e-07 2.71e-07 3.88e-07 4.51e-07 3.32e-07 8.37e-08 5.51e-08 1.39e-07 2.58e-07 7.56e-08 1e-07 6e-08 5.77e-08 7.39e-08 4.45e-08 6.11e-07 1.96e-08 2.04e-08 9.64e-08 1.81e-08 9.98e-08 2.85e-09 5.54e-08
ENSG00000198324 PHETA1 605095 3.71e-07 1.83e-07 6.41e-08 2.24e-07 1.07e-07 8.75e-08 2.74e-07 5.84e-08 1.98e-07 1.11e-07 2.38e-07 1.59e-07 3.4e-07 8.44e-08 6.53e-08 1.01e-07 5.57e-08 2.56e-07 7.29e-08 5.75e-08 1.24e-07 1.98e-07 1.73e-07 3.68e-08 2.74e-07 1.65e-07 1.23e-07 1.46e-07 1.44e-07 1.38e-07 1.43e-07 3.9e-08 4.37e-08 9.5e-08 4.41e-08 3.18e-08 3.7e-08 8.89e-08 6.39e-08 5.13e-08 6e-08 2.5e-07 4.76e-08 7.47e-09 3.55e-08 6.39e-09 8.67e-08 1.96e-09 4.83e-08
ENSG00000213152 RPL7AP60 -328447 1.26e-06 9.01e-07 2.1e-07 3.15e-07 1.81e-07 3.08e-07 9.92e-07 2.88e-07 1.14e-06 3.28e-07 1.35e-06 5.73e-07 1.59e-06 2.33e-07 4.49e-07 5.75e-07 7.68e-07 5.54e-07 3.74e-07 3.57e-07 2.82e-07 9.57e-07 6.63e-07 3.96e-07 1.86e-06 2.94e-07 5.43e-07 5.63e-07 9.32e-07 9.22e-07 5.39e-07 4.21e-08 1.37e-07 2.97e-07 3.29e-07 2.94e-07 2.46e-07 1.13e-07 7.63e-08 8.59e-09 1.43e-07 1.44e-06 6.18e-08 5.8e-09 1.93e-07 4.53e-08 1.41e-07 3.84e-08 4.96e-08
ENSG00000234608 MAPKAPK5-AS1 131314 3.99e-06 3.85e-06 6.04e-07 1.96e-06 8.47e-07 7.26e-07 2.62e-06 9.93e-07 3.05e-06 1.67e-06 4.17e-06 2.51e-06 6.48e-06 1.25e-06 1.05e-06 2.07e-06 1.63e-06 2.34e-06 1.53e-06 1.18e-06 1.81e-06 3.94e-06 3.34e-06 1.82e-06 4.79e-06 1.25e-06 1.63e-06 1.43e-06 3.92e-06 3.27e-06 2.05e-06 4.17e-07 8.14e-07 1.59e-06 1.84e-06 9.23e-07 9.25e-07 4.23e-07 1.25e-06 3.46e-07 2.22e-07 4.56e-06 6.52e-07 1.93e-07 3.82e-07 3.31e-07 8.69e-07 2.47e-07 1.78e-07