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Genes within 1Mb (chr1:55804864:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116133 DHCR24 917669 sc-eQTL 5.11e-01 -0.0902 0.137 0.908 B L1
ENSG00000162402 USP24 589500 sc-eQTL 5.74e-01 0.0471 0.0836 0.908 B L1
ENSG00000162407 PLPP3 -840437 sc-eQTL 6.79e-01 -0.0588 0.142 0.908 B L1
ENSG00000162402 USP24 589500 sc-eQTL 9.13e-01 0.00882 0.0807 0.908 CD4T L1
ENSG00000162402 USP24 589500 sc-eQTL 2.25e-01 -0.0988 0.0811 0.908 CD8T L1
ENSG00000116133 DHCR24 917669 sc-eQTL 1.53e-03 0.416 0.129 0.908 DC L1
ENSG00000162402 USP24 589500 sc-eQTL 8.61e-01 -0.0142 0.0812 0.908 DC L1
ENSG00000116133 DHCR24 917669 sc-eQTL 1.17e-01 0.149 0.0951 0.908 Mono L1
ENSG00000162402 USP24 589500 sc-eQTL 9.67e-01 -0.00367 0.0875 0.908 Mono L1
ENSG00000116133 DHCR24 917669 sc-eQTL 9.64e-01 -0.00599 0.131 0.908 NK L1
ENSG00000162398 LEXM 998801 sc-eQTL 6.00e-01 0.0641 0.122 0.908 NK L1
ENSG00000162402 USP24 589500 sc-eQTL 3.91e-01 -0.0635 0.074 0.908 NK L1
ENSG00000116133 DHCR24 917669 sc-eQTL 1.31e-01 0.144 0.0947 0.908 Other_T L1
ENSG00000162402 USP24 589500 sc-eQTL 9.85e-01 -0.00214 0.113 0.908 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116133 DHCR24 917669 sc-eQTL 8.10e-01 0.0353 0.146 0.908 B_Activated L2
ENSG00000162402 USP24 589500 sc-eQTL 2.74e-01 0.174 0.159 0.908 B_Activated L2
ENSG00000162407 PLPP3 -840437 sc-eQTL 8.05e-01 -0.0396 0.16 0.908 B_Activated L2
ENSG00000116133 DHCR24 917669 sc-eQTL 5.32e-01 -0.0959 0.153 0.908 B_Intermediate L2
ENSG00000162402 USP24 589500 sc-eQTL 8.51e-01 0.0228 0.121 0.908 B_Intermediate L2
ENSG00000162407 PLPP3 -840437 sc-eQTL 7.98e-01 0.0396 0.155 0.908 B_Intermediate L2
ENSG00000116133 DHCR24 917669 sc-eQTL 3.49e-01 -0.147 0.157 0.909 B_Memory L2
ENSG00000162402 USP24 589500 sc-eQTL 9.54e-01 0.00751 0.129 0.909 B_Memory L2
ENSG00000162407 PLPP3 -840437 sc-eQTL 9.03e-01 0.0176 0.144 0.909 B_Memory L2
ENSG00000116133 DHCR24 917669 sc-eQTL 8.74e-01 0.0232 0.147 0.908 B_Naive1 L2
ENSG00000162402 USP24 589500 sc-eQTL 8.85e-01 0.0153 0.105 0.908 B_Naive1 L2
ENSG00000162407 PLPP3 -840437 sc-eQTL 7.74e-01 0.0419 0.145 0.908 B_Naive1 L2
ENSG00000116133 DHCR24 917669 sc-eQTL 4.61e-01 -0.1 0.136 0.91 B_Naive2 L2
ENSG00000162402 USP24 589500 sc-eQTL 5.23e-01 0.0729 0.114 0.91 B_Naive2 L2
ENSG00000162407 PLPP3 -840437 sc-eQTL 1.06e-01 -0.216 0.133 0.91 B_Naive2 L2
ENSG00000162402 USP24 589500 sc-eQTL 1.24e-01 -0.239 0.154 0.911 CD4_CTL L2
ENSG00000162402 USP24 589500 sc-eQTL 4.70e-01 0.0631 0.0871 0.908 CD4_Naive L2
ENSG00000162402 USP24 589500 sc-eQTL 6.23e-02 -0.196 0.105 0.908 CD4_TCM L2
ENSG00000162402 USP24 589500 sc-eQTL 6.99e-01 0.0485 0.125 0.908 CD4_TEM L2
ENSG00000162402 USP24 589500 sc-eQTL 2.48e-01 -0.116 0.0999 0.908 CD8_CTL L2
ENSG00000162402 USP24 589500 sc-eQTL 6.10e-01 -0.0541 0.106 0.908 CD8_Naive L2
ENSG00000162402 USP24 589500 sc-eQTL 8.62e-01 -0.0253 0.145 0.912 CD8_TCM L2
ENSG00000162402 USP24 589500 sc-eQTL 2.75e-01 -0.169 0.154 0.906 CD8_TEM L2
ENSG00000116133 DHCR24 917669 sc-eQTL 7.92e-01 -0.0283 0.107 0.909 MAIT L2
ENSG00000162402 USP24 589500 sc-eQTL 6.01e-01 -0.0682 0.13 0.909 MAIT L2
ENSG00000116133 DHCR24 917669 sc-eQTL 6.74e-01 -0.0582 0.138 0.904 NK_CD56bright L2
ENSG00000162398 LEXM 998801 sc-eQTL 7.49e-01 0.0454 0.142 0.904 NK_CD56bright L2
ENSG00000162402 USP24 589500 sc-eQTL 8.49e-01 -0.0233 0.122 0.904 NK_CD56bright L2
ENSG00000116133 DHCR24 917669 sc-eQTL 3.29e-01 0.133 0.136 0.907 NK_CD56dim L2
ENSG00000162398 LEXM 998801 sc-eQTL 9.88e-01 0.00205 0.134 0.907 NK_CD56dim L2
ENSG00000162402 USP24 589500 sc-eQTL 3.24e-01 -0.0838 0.0848 0.907 NK_CD56dim L2
ENSG00000116133 DHCR24 917669 sc-eQTL 5.50e-01 0.0906 0.151 0.906 NK_HLA L2
ENSG00000162398 LEXM 998801 sc-eQTL 1.29e-01 -0.223 0.146 0.906 NK_HLA L2
ENSG00000162402 USP24 589500 sc-eQTL 4.84e-01 -0.0756 0.108 0.906 NK_HLA L2
ENSG00000116133 DHCR24 917669 sc-eQTL 1.06e-01 -0.228 0.141 0.907 NK_cytokine L2
ENSG00000162398 LEXM 998801 sc-eQTL 5.80e-01 0.0816 0.147 0.907 NK_cytokine L2
ENSG00000162402 USP24 589500 sc-eQTL 7.91e-01 -0.0266 0.1 0.907 NK_cytokine L2
ENSG00000116133 DHCR24 917669 sc-eQTL 1.53e-01 0.239 0.166 0.919 PB L2
ENSG00000162402 USP24 589500 sc-eQTL 7.21e-01 -0.0727 0.203 0.919 PB L2
ENSG00000162407 PLPP3 -840437 sc-eQTL 5.39e-01 0.113 0.183 0.919 PB L2
ENSG00000116133 DHCR24 917669 sc-eQTL 8.36e-02 0.216 0.124 0.907 Pro_T L2
ENSG00000162402 USP24 589500 sc-eQTL 1.91e-01 0.186 0.141 0.907 Pro_T L2
ENSG00000162402 USP24 589500 sc-eQTL 8.77e-01 -0.0198 0.128 0.908 Treg L2
ENSG00000116133 DHCR24 917669 sc-eQTL 1.10e-01 0.215 0.134 0.905 cDC L2
ENSG00000162402 USP24 589500 sc-eQTL 3.99e-01 -0.14 0.166 0.905 cDC L2
ENSG00000116133 DHCR24 917669 sc-eQTL 8.12e-02 0.161 0.0916 0.908 cMono_IL1B L2
ENSG00000162402 USP24 589500 sc-eQTL 8.22e-01 -0.0235 0.104 0.908 cMono_IL1B L2
ENSG00000116133 DHCR24 917669 sc-eQTL 3.30e-01 0.0846 0.0867 0.908 cMono_S100A L2
ENSG00000162402 USP24 589500 sc-eQTL 1.85e-01 0.171 0.128 0.908 cMono_S100A L2
ENSG00000116133 DHCR24 917669 sc-eQTL 3.86e-01 -0.151 0.174 0.915 gdT L2
ENSG00000162402 USP24 589500 sc-eQTL 3.58e-01 0.154 0.167 0.915 gdT L2
ENSG00000116133 DHCR24 917669 sc-eQTL 4.56e-01 -0.0906 0.121 0.911 intMono L2
ENSG00000162402 USP24 589500 sc-eQTL 4.96e-02 -0.303 0.153 0.911 intMono L2
ENSG00000116133 DHCR24 917669 sc-eQTL 3.14e-01 -0.117 0.116 0.912 ncMono L2
ENSG00000162402 USP24 589500 sc-eQTL 8.54e-01 0.024 0.131 0.912 ncMono L2
ENSG00000116133 DHCR24 917669 sc-eQTL 1.58e-01 0.214 0.151 0.912 pDC L2
ENSG00000162402 USP24 589500 sc-eQTL 9.56e-01 0.00679 0.122 0.912 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116133 DHCR24 917669 sc-eQTL 5.26e-01 -0.0955 0.15 0.908 B_Memory LOneK1K
ENSG00000162402 USP24 589500 sc-eQTL 1.97e-01 0.139 0.107 0.908 B_Memory LOneK1K
ENSG00000162407 PLPP3 -840437 sc-eQTL 4.62e-01 0.0986 0.134 0.908 B_Memory LOneK1K
ENSG00000116133 DHCR24 917669 sc-eQTL 7.97e-01 -0.0363 0.141 0.908 B_Naive LOneK1K
ENSG00000162402 USP24 589500 sc-eQTL 6.21e-01 0.0493 0.0996 0.908 B_Naive LOneK1K
ENSG00000162407 PLPP3 -840437 sc-eQTL 2.45e-01 -0.181 0.155 0.908 B_Naive LOneK1K
ENSG00000116133 DHCR24 917669 sc-eQTL 4.86e-02 0.176 0.0885 0.908 CD14_Mono LOneK1K
ENSG00000162402 USP24 589500 sc-eQTL 6.17e-01 0.0488 0.0976 0.908 CD14_Mono LOneK1K
ENSG00000116133 DHCR24 917669 sc-eQTL 4.56e-01 -0.0819 0.11 0.907 CD16_Mono LOneK1K
ENSG00000162402 USP24 589500 sc-eQTL 3.52e-01 -0.115 0.123 0.907 CD16_Mono LOneK1K
ENSG00000116133 DHCR24 917669 sc-eQTL 9.59e-01 -0.00677 0.132 0.907 NK_CD56dim LOneK1K
ENSG00000162398 LEXM 998801 sc-eQTL 7.91e-01 0.033 0.124 0.907 NK_CD56dim LOneK1K
ENSG00000162402 USP24 589500 sc-eQTL 4.16e-01 -0.0642 0.0787 0.907 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000234810 AL603840.1 475576 eQTL 0.0457 0.109 0.0542 0.0 0.0 0.0815

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000169174 \N 765316 2.76e-07 1.34e-07 4.48e-08 1.9e-07 9.24e-08 9.91e-08 1.6e-07 5.48e-08 1.45e-07 5.42e-08 1.55e-07 9e-08 1.59e-07 7.37e-08 5.91e-08 7.36e-08 4.09e-08 1.33e-07 5.97e-08 4.23e-08 1.19e-07 1.24e-07 1.45e-07 2.93e-08 1.5e-07 1.21e-07 1.07e-07 9.61e-08 1.16e-07 1e-07 1.02e-07 3.26e-08 3.89e-08 8.72e-08 5.64e-08 3.28e-08 5.29e-08 9.23e-08 6.86e-08 3.87e-08 4.36e-08 1.46e-07 5.2e-08 1.53e-08 4.7e-08 1.86e-08 1.19e-07 1.88e-09 5.04e-08
ENSG00000234810 AL603840.1 475576 6.8e-07 3.55e-07 7.76e-08 2.96e-07 1.07e-07 1.57e-07 4.09e-07 7.98e-08 2.66e-07 1.5e-07 3.66e-07 2.22e-07 5.62e-07 1.07e-07 1.18e-07 1.46e-07 1.35e-07 2.96e-07 1.27e-07 7.84e-08 1.59e-07 2.45e-07 2.63e-07 9.01e-08 4.27e-07 2e-07 1.78e-07 1.7e-07 2.13e-07 3.52e-07 1.93e-07 6.58e-08 5.53e-08 1.19e-07 2.15e-07 6.52e-08 7.86e-08 5.53e-08 6.08e-08 8.09e-08 5.03e-08 3.26e-07 3.19e-08 7.28e-09 7.26e-08 9.49e-09 9.1e-08 2.8e-09 4.74e-08