Genes within 1Mb (chr1:52709224:G:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 830287 sc-eQTL 4.29e-01 -0.191 0.241 0.052 gdT L2
ENSG00000085840 ORC1 304801 sc-eQTL 7.65e-01 -0.0605 0.202 0.052 gdT L2
ENSG00000116157 GPX7 106853 sc-eQTL 2.57e-01 0.287 0.252 0.052 gdT L2
ENSG00000116171 SCP2 -218052 sc-eQTL 6.39e-01 -0.0915 0.195 0.052 gdT L2
ENSG00000117862 TXNDC12 653053 sc-eQTL 6.17e-01 -0.129 0.257 0.052 gdT L2
ENSG00000121310 ECHDC2 -217988 sc-eQTL 5.46e-01 0.171 0.282 0.052 gdT L2
ENSG00000134717 BTF3L4 653025 sc-eQTL 8.00e-01 0.0666 0.262 0.052 gdT L2
ENSG00000134744 TUT4 155737 sc-eQTL 4.85e-02 -0.532 0.267 0.052 gdT L2
ENSG00000134748 PRPF38A 304622 sc-eQTL 4.70e-01 -0.196 0.271 0.052 gdT L2
ENSG00000154222 CC2D1B 343031 sc-eQTL 5.43e-01 -0.149 0.244 0.052 gdT L2
ENSG00000157077 ZFYVE9 567130 sc-eQTL 4.33e-01 0.184 0.234 0.052 gdT L2
ENSG00000157184 CPT2 -487568 sc-eQTL 7.79e-01 -0.0756 0.269 0.052 gdT L2
ENSG00000157193 LRP8 -619245 sc-eQTL 8.61e-01 0.0462 0.264 0.052 gdT L2
ENSG00000162377 COA7 10877 sc-eQTL 7.54e-01 -0.0743 0.236 0.052 gdT L2
ENSG00000162378 ZYG11B -17229 sc-eQTL 4.20e-01 -0.207 0.257 0.052 gdT L2
ENSG00000162383 SLC1A7 -433408 sc-eQTL 5.40e-02 0.347 0.179 0.052 gdT L2
ENSG00000162384 CZIB -511410 sc-eQTL 6.51e-01 0.114 0.251 0.052 gdT L2
ENSG00000162385 MAGOH -529294 sc-eQTL 1.52e-01 0.366 0.254 0.052 gdT L2
ENSG00000182183 SHISAL2A 76056 sc-eQTL 3.36e-01 0.234 0.243 0.052 gdT L2
ENSG00000198841 KTI12 675414 sc-eQTL 1.93e-01 0.321 0.246 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116171 SCP2 -218052 pQTL 0.000358 -0.176 0.0493 0.00876 0.00981 0.0466
ENSG00000116171 SCP2 -218052 eQTL 2.57e-07 -0.202 0.0389 0.0 0.0 0.0456
ENSG00000121310 ECHDC2 -217988 eQTL 5.99e-09 -0.25 0.0427 0.0 0.0 0.0456
ENSG00000162384 CZIB -511410 eQTL 0.0389 -0.0725 0.0351 0.0 0.0 0.0456
ENSG00000226147 TUBBP10 -285502 eQTL 0.000852 -0.323 0.0965 0.0 0.0 0.0456
ENSG00000266993 AL050343.1 915290 eQTL 0.00427 -0.153 0.0536 0.00444 0.00147 0.0456


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000085840 \N 304801 1.27e-06 9.53e-07 3.03e-07 1e-06 1.96e-07 4.59e-07 1.38e-06 3.25e-07 1.2e-06 3.77e-07 1.38e-06 5.64e-07 2.02e-06 2.7e-07 4.19e-07 6.72e-07 8.26e-07 5.66e-07 5.26e-07 6.86e-07 3.91e-07 1.05e-06 9.21e-07 5.91e-07 1.95e-06 3.28e-07 6.13e-07 7.81e-07 1.17e-06 1.03e-06 5.77e-07 1.3e-07 1.81e-07 5.45e-07 5.39e-07 4.09e-07 3.62e-07 1.53e-07 2.78e-07 9.03e-08 2.72e-07 1.56e-06 6.68e-08 5.89e-09 1.59e-07 9.85e-08 1.7e-07 8.74e-08 5.94e-08
ENSG00000116171 SCP2 -218052 1.9e-06 2.42e-06 2.53e-07 1.51e-06 3.88e-07 6.94e-07 1.3e-06 3.95e-07 1.78e-06 7.04e-07 1.84e-06 1.26e-06 2.98e-06 8.5e-07 3.28e-07 1.01e-06 1.07e-06 1.18e-06 5.38e-07 7.68e-07 6.34e-07 1.88e-06 1.65e-06 6.91e-07 2.57e-06 9.13e-07 9.78e-07 1.04e-06 1.74e-06 1.31e-06 7.49e-07 2.44e-07 3.19e-07 6.66e-07 9.17e-07 6.07e-07 7.3e-07 3.23e-07 4.94e-07 2.06e-07 3.58e-07 2.92e-06 1.67e-07 6.51e-08 3.14e-07 3.25e-07 2.71e-07 9.26e-08 1.47e-07
ENSG00000121310 ECHDC2 -217988 1.9e-06 2.42e-06 2.53e-07 1.51e-06 3.88e-07 6.94e-07 1.3e-06 3.95e-07 1.78e-06 7.04e-07 1.84e-06 1.26e-06 2.98e-06 8.5e-07 3.28e-07 1.01e-06 1.07e-06 1.18e-06 5.38e-07 7.68e-07 6.34e-07 1.88e-06 1.65e-06 6.91e-07 2.57e-06 9.13e-07 9.78e-07 1.04e-06 1.74e-06 1.31e-06 7.49e-07 2.44e-07 3.19e-07 6.66e-07 9.17e-07 6.07e-07 7.3e-07 3.23e-07 4.94e-07 2.06e-07 3.58e-07 2.94e-06 1.67e-07 6.51e-08 3.14e-07 3.25e-07 2.71e-07 9.26e-08 1.47e-07
ENSG00000174348 \N -352828 1.27e-06 9.01e-07 1.59e-07 4.15e-07 9.61e-08 3.08e-07 8.96e-07 2.66e-07 8.66e-07 3.05e-07 1.1e-06 5.5e-07 1.48e-06 2.29e-07 4.12e-07 3.96e-07 6.29e-07 4.65e-07 3.51e-07 4.48e-07 2.53e-07 5.71e-07 6.18e-07 3.27e-07 1.66e-06 2.38e-07 4.68e-07 4.96e-07 7.07e-07 8.4e-07 4.48e-07 3.67e-08 9.36e-08 2.46e-07 3.42e-07 2.54e-07 1.82e-07 1.13e-07 1.23e-07 1.84e-08 2.32e-07 1.43e-06 4.53e-08 2e-08 1.96e-07 4.43e-08 1.49e-07 3.13e-08 4.97e-08
ENSG00000226147 TUBBP10 -285502 1.28e-06 9.83e-07 3.08e-07 1.19e-06 2.58e-07 4.81e-07 1.6e-06 3.49e-07 1.39e-06 4.28e-07 1.74e-06 6.62e-07 2.19e-06 2.96e-07 5.58e-07 7.95e-07 8.13e-07 5.76e-07 6.68e-07 6.49e-07 4.99e-07 1.27e-06 8.35e-07 6.51e-07 2.29e-06 3.91e-07 7.12e-07 7.24e-07 1.29e-06 1.21e-06 6.9e-07 1.73e-07 2.43e-07 6.99e-07 5.69e-07 4.69e-07 4.26e-07 1.24e-07 3.6e-07 2.45e-07 2.68e-07 1.62e-06 6.58e-08 1.25e-08 1.86e-07 1.27e-07 2.41e-07 8.89e-08 5.32e-08
ENSG00000266993 AL050343.1 915290 2.74e-07 1.3e-07 3.72e-08 1.86e-07 9.01e-08 1e-07 1.49e-07 5.2e-08 1.44e-07 4.57e-08 1.6e-07 8.59e-08 1.41e-07 6.56e-08 6.17e-08 7.17e-08 3.98e-08 1.18e-07 5.36e-08 4.23e-08 1.08e-07 1.23e-07 1.39e-07 3.68e-08 1.4e-07 1.16e-07 1.08e-07 9.65e-08 1.08e-07 1.1e-07 9.64e-08 3.26e-08 3.16e-08 8.68e-08 7.66e-08 3.95e-08 5.05e-08 9.61e-08 6.54e-08 4.02e-08 4.92e-08 1.4e-07 4.14e-08 3.16e-08 5.19e-08 1.83e-08 1.22e-07 3.83e-09 4.73e-08