Genes within 1Mb (chr1:52429889:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 550952 sc-eQTL 7.37e-01 -0.0731 0.217 0.055 gdT L2
ENSG00000085832 EPS15 910623 sc-eQTL 2.68e-01 -0.264 0.237 0.055 gdT L2
ENSG00000085840 ORC1 25466 sc-eQTL 1.30e-01 -0.273 0.18 0.055 gdT L2
ENSG00000116157 GPX7 -172482 sc-eQTL 6.53e-01 0.102 0.227 0.055 gdT L2
ENSG00000116171 SCP2 -497387 sc-eQTL 9.65e-01 -0.0077 0.175 0.055 gdT L2
ENSG00000117859 OSBPL9 852710 sc-eQTL 5.67e-01 0.137 0.239 0.055 gdT L2
ENSG00000117862 TXNDC12 373718 sc-eQTL 2.10e-02 -0.53 0.227 0.055 gdT L2
ENSG00000121310 ECHDC2 -497323 sc-eQTL 1.17e-02 -0.633 0.248 0.055 gdT L2
ENSG00000134717 BTF3L4 373690 sc-eQTL 1.18e-01 0.368 0.234 0.055 gdT L2
ENSG00000134744 TUT4 -123598 sc-eQTL 1.30e-01 -0.368 0.242 0.055 gdT L2
ENSG00000134748 PRPF38A 25287 sc-eQTL 8.47e-01 0.0472 0.244 0.055 gdT L2
ENSG00000154222 CC2D1B 63696 sc-eQTL 1.00e-01 -0.36 0.218 0.055 gdT L2
ENSG00000157077 ZFYVE9 287795 sc-eQTL 2.08e-01 0.265 0.21 0.055 gdT L2
ENSG00000157184 CPT2 -766903 sc-eQTL 6.44e-01 -0.112 0.241 0.055 gdT L2
ENSG00000157193 LRP8 -898580 sc-eQTL 7.90e-02 0.415 0.235 0.055 gdT L2
ENSG00000162377 COA7 -268458 sc-eQTL 7.58e-01 -0.0656 0.212 0.055 gdT L2
ENSG00000162378 ZYG11B -296564 sc-eQTL 2.82e-01 0.248 0.23 0.055 gdT L2
ENSG00000162383 SLC1A7 -712743 sc-eQTL 8.79e-01 -0.0249 0.163 0.055 gdT L2
ENSG00000162384 CZIB -790745 sc-eQTL 7.93e-01 0.0593 0.226 0.055 gdT L2
ENSG00000162385 MAGOH -808629 sc-eQTL 1.08e-01 0.369 0.228 0.055 gdT L2
ENSG00000182183 SHISAL2A -203279 sc-eQTL 5.51e-01 -0.131 0.219 0.055 gdT L2
ENSG00000198841 KTI12 396079 sc-eQTL 6.71e-01 0.0945 0.222 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116157 GPX7 -172482 eQTL 0.000574 -0.2 0.0579 0.0 0.0 0.0466
ENSG00000162383 SLC1A7 -712743 eQTL 0.00798 0.17 0.0639 0.0 0.0 0.0466
ENSG00000162384 CZIB -790745 eQTL 0.0035 -0.0966 0.033 0.019 0.00342 0.0466
ENSG00000174348 PODN -632163 eQTL 0.0305 0.0959 0.0443 0.0 0.0 0.0466
ENSG00000182183 SHISAL2A -203279 eQTL 0.000388 -0.141 0.0396 0.0 0.0 0.0466
ENSG00000236973 GAPDHP51 721752 eQTL 0.127 -0.107 0.07 0.00107 0.0 0.0466


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000085832 \N 910623 3.14e-07 1.56e-07 6.41e-08 2.31e-07 1.07e-07 8.63e-08 2.24e-07 5.82e-08 1.71e-07 9.72e-08 1.83e-07 1.23e-07 2.24e-07 8e-08 6.2e-08 8.08e-08 4.63e-08 1.91e-07 7.39e-08 5.61e-08 1.18e-07 1.56e-07 1.68e-07 3.4e-08 2.17e-07 1.31e-07 1.22e-07 1.28e-07 1.32e-07 1.06e-07 1.22e-07 6.04e-08 3.29e-08 9.78e-08 4.04e-08 2.68e-08 3.91e-08 8.25e-08 6.39e-08 6.31e-08 5.87e-08 1.59e-07 4.7e-08 1.11e-08 3.3e-08 1.19e-08 8.98e-08 2.05e-09 4.91e-08
ENSG00000162383 SLC1A7 -712743 5.59e-07 3.11e-07 8.51e-08 3.05e-07 1.07e-07 1.5e-07 4.09e-07 8.17e-08 2.76e-07 1.65e-07 3.97e-07 2.11e-07 4.54e-07 8.85e-08 1.51e-07 1.39e-07 1.38e-07 3.02e-07 1.27e-07 8.86e-08 1.6e-07 2.51e-07 2.56e-07 5.6e-08 4.27e-07 2.01e-07 1.78e-07 1.97e-07 1.98e-07 2.02e-07 1.95e-07 5.82e-08 5.17e-08 1.02e-07 1.69e-07 5.41e-08 7.74e-08 6.2e-08 4.78e-08 5.64e-08 2.78e-08 2.91e-07 3.09e-08 1.98e-08 9.15e-08 8.94e-09 9.84e-08 2.94e-09 5.16e-08
ENSG00000174348 PODN -632163 7.76e-07 5.18e-07 1e-07 3.81e-07 9.16e-08 1.85e-07 5.28e-07 1.31e-07 4.18e-07 2.34e-07 6.56e-07 3.36e-07 6.77e-07 1.1e-07 2.57e-07 2e-07 3.24e-07 3.82e-07 1.89e-07 1.65e-07 1.92e-07 3.65e-07 3.19e-07 1.21e-07 6.65e-07 2.42e-07 2.52e-07 2.59e-07 3e-07 3.39e-07 2.93e-07 4.5e-08 5.42e-08 1.19e-07 3.07e-07 7.86e-08 1.18e-07 7.53e-08 4.23e-08 2.62e-08 6.39e-08 4.68e-07 2.67e-08 1.86e-08 1.33e-07 1.91e-08 8.13e-08 1.2e-08 5.65e-08
ENSG00000182183 SHISAL2A -203279 4.3e-06 4.74e-06 8.3e-07 2.79e-06 1.38e-06 1.27e-06 3.57e-06 9.6e-07 4.96e-06 2.44e-06 4.9e-06 3.41e-06 7.62e-06 1.66e-06 1.33e-06 2.68e-06 2.07e-06 2.79e-06 1.28e-06 1.02e-06 2.91e-06 4.61e-06 3.34e-06 1.71e-06 4.78e-06 1.38e-06 2.55e-06 1.85e-06 4.09e-06 2.87e-06 2.54e-06 4.96e-07 6.92e-07 1.74e-06 2.03e-06 9.43e-07 8.96e-07 5.45e-07 1.07e-06 3.4e-07 4.03e-07 4.86e-06 3.63e-07 1.55e-07 5.95e-07 4.12e-07 7.75e-07 4.43e-07 3.26e-07
ENSG00000232846 \N 720827 5.37e-07 3.12e-07 7.97e-08 2.87e-07 1.1e-07 1.44e-07 4.05e-07 7.98e-08 2.66e-07 1.65e-07 3.92e-07 2.09e-07 4.27e-07 8.85e-08 1.48e-07 1.33e-07 1.35e-07 2.96e-07 1.13e-07 8.25e-08 1.59e-07 2.48e-07 2.48e-07 5.11e-08 4.11e-07 2e-07 1.74e-07 1.95e-07 1.98e-07 2e-07 1.93e-07 5.71e-08 4.96e-08 1.03e-07 1.56e-07 5.23e-08 7.52e-08 6.1e-08 4.99e-08 7.5e-08 3.27e-08 2.9e-07 3.37e-08 1.57e-08 8.68e-08 8.76e-09 9.34e-08 2.89e-09 4.82e-08