Genes within 1Mb (chr12:112279196:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 436968 eQTL 1.51e-39 -0.194 0.0141 0.0 0.0 0.36
ENSG00000089169 RPH3A -291184 eQTL 2.51e-04 -0.112 0.0305 0.0 0.0 0.36
ENSG00000089234 BRAP 593240 pQTL 4.37e-03 -0.0425 0.0149 0.0011 0.0 0.368
ENSG00000089248 ERP29 265848 eQTL 1.59e-04 -0.0506 0.0134 0.0 0.0 0.36
ENSG00000111252 SH2B3 873248 pQTL 9.00e-05 -0.0576 0.0147 0.0 0.0 0.368
ENSG00000111271 ACAD10 593132 eQTL 1.17e-02 -0.0383 0.0152 0.00109 0.0 0.36
ENSG00000111275 ALDH2 512309 pQTL 5.01e-07 -0.132 0.0261 0.0 0.0 0.368
ENSG00000111300 NAA25 170400 eQTL 1.37e-15 -0.0973 0.012 0.0 0.0 0.36
ENSG00000111335 OAS2 -699199 eQTL 4.91e-03 0.0335 0.0119 0.0 0.0 0.36
ENSG00000135148 TRAFD1 153651 eQTL 3.70e-02 -0.0221 0.0106 0.00101 0.0 0.36
ENSG00000173064 HECTD4 -103243 eQTL 1.06e-90 0.268 0.0119 0.00161 0.00626 0.36
ENSG00000179295 PTPN11 -139155 eQTL 2.60e-09 -0.0865 0.0144 0.0 0.0 0.36
ENSG00000198324 PHETA1 910075 eQTL 2.26e-14 0.148 0.019 0.0 0.00119 0.36
ENSG00000204842 ATXN2 679520 eQTL 1.75e-05 0.0591 0.0137 0.0 0.0 0.36
ENSG00000213152 RPL7AP60 -23467 eQTL 2.15e-05 -0.163 0.0382 0.00453 0.00437 0.36
ENSG00000234608 MAPKAPK5-AS1 436294 eQTL 3.25e-18 -0.115 0.0129 0.00193 0.00387 0.36
ENSG00000257595 LINC02356 909914 eQTL 2.86e-02 0.0729 0.0332 0.0 0.0 0.36


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 436968 1.13e-06 7.46e-07 1.87e-07 4.32e-07 1.38e-07 3.36e-07 6.29e-07 2.21e-07 6.62e-07 3.17e-07 1.1e-06 5.35e-07 9.97e-07 1.98e-07 3.35e-07 3.68e-07 5.63e-07 4.4e-07 3.5e-07 2.78e-07 2.39e-07 5.36e-07 4.66e-07 2.89e-07 1.14e-06 2.64e-07 4.71e-07 3.89e-07 5.03e-07 8.5e-07 4.02e-07 3.72e-08 1.04e-07 1.71e-07 3.38e-07 3.02e-07 1.86e-07 1.36e-07 7.54e-08 2.22e-08 8.42e-08 7.53e-07 5.58e-08 1.23e-08 1.69e-07 4.23e-08 1.46e-07 5.73e-08 9.32e-08
ENSG00000089169 RPH3A -291184 1.4e-06 1.4e-06 2.51e-07 1.26e-06 4.55e-07 6.42e-07 1.5e-06 4.44e-07 1.73e-06 7.15e-07 1.98e-06 1.2e-06 2.61e-06 4.19e-07 4.37e-07 9.9e-07 9.95e-07 1.09e-06 5.36e-07 5.06e-07 6.67e-07 1.98e-06 1.13e-06 5.72e-07 2.47e-06 7.75e-07 1.02e-06 8.53e-07 1.59e-06 1.26e-06 8.51e-07 2.83e-07 3.44e-07 6.19e-07 5.38e-07 6.02e-07 7.71e-07 3.36e-07 4.74e-07 3.32e-07 2.89e-07 1.95e-06 4.14e-07 1.25e-07 3.62e-07 2.46e-07 2.6e-07 1.42e-07 2.4e-07
ENSG00000089248 ERP29 265848 1.68e-06 2.13e-06 2.46e-07 1.27e-06 4.43e-07 7.12e-07 1.22e-06 3.9e-07 1.76e-06 7.2e-07 1.86e-06 1.45e-06 2.72e-06 7.96e-07 4.19e-07 1.16e-06 1.1e-06 1.34e-06 5.93e-07 7.92e-07 6.36e-07 1.94e-06 1.54e-06 8.33e-07 2.42e-06 1.01e-06 1.15e-06 1.11e-06 1.7e-06 1.59e-06 7.67e-07 2.21e-07 3.98e-07 5.91e-07 6.64e-07 7.02e-07 6.6e-07 4.57e-07 4.69e-07 2.22e-07 2.8e-07 2.43e-06 6.27e-07 1.67e-07 3.21e-07 3.16e-07 4.08e-07 2.54e-07 1.66e-07
ENSG00000111300 NAA25 170400 4.46e-06 4.86e-06 8.34e-07 2.61e-06 1.64e-06 1.55e-06 3.91e-06 9.61e-07 5.14e-06 2.39e-06 5.26e-06 3.33e-06 7.2e-06 2.47e-06 1.43e-06 3.71e-06 1.98e-06 3.57e-06 1.47e-06 1.12e-06 3.02e-06 4.91e-06 3.78e-06 1.56e-06 5.16e-06 1.72e-06 2.49e-06 1.85e-06 4.32e-06 4.1e-06 2.7e-06 4.2e-07 5.47e-07 1.76e-06 2.09e-06 1.04e-06 9.66e-07 4.74e-07 1.23e-06 3.57e-07 2.8e-07 5.74e-06 5.44e-07 1.81e-07 6.36e-07 7.09e-07 9.92e-07 4.11e-07 5.29e-07
ENSG00000173064 HECTD4 -103243 7.82e-06 9.37e-06 1.23e-06 4.57e-06 2.36e-06 4.07e-06 9.6e-06 1.97e-06 8.84e-06 5.06e-06 1.16e-05 5.17e-06 1.32e-05 3.95e-06 2.37e-06 6.66e-06 3.77e-06 6.61e-06 2.58e-06 2.91e-06 4.74e-06 8.66e-06 6.92e-06 2.82e-06 1.26e-05 3.51e-06 4.7e-06 3.69e-06 8.25e-06 7.86e-06 5.04e-06 9.9e-07 1.23e-06 2.79e-06 3.49e-06 2.21e-06 1.71e-06 2.07e-06 1.42e-06 1e-06 8.81e-07 1.19e-05 1.43e-06 1.35e-07 7.73e-07 1.57e-06 1.3e-06 6.92e-07 4.95e-07
ENSG00000179295 PTPN11 -139155 5.28e-06 6.47e-06 7.05e-07 3.37e-06 1.71e-06 1.59e-06 7.3e-06 1.22e-06 4.77e-06 3.31e-06 8.09e-06 2.93e-06 9.86e-06 2.17e-06 9.83e-07 4.32e-06 2.76e-06 3.74e-06 1.65e-06 1.69e-06 2.66e-06 6.67e-06 4.8e-06 1.93e-06 8.55e-06 2.14e-06 3.25e-06 1.83e-06 5.11e-06 5.53e-06 3.29e-06 5.12e-07 7.79e-07 1.82e-06 2.06e-06 1.38e-06 1.03e-06 6.94e-07 8.54e-07 6.1e-07 5.7e-07 8.22e-06 8.75e-07 1.49e-07 7.83e-07 1.07e-06 1.03e-06 6.72e-07 5.64e-07
ENSG00000198324 PHETA1 910075 2.67e-07 1.3e-07 4.98e-08 1.81e-07 1.01e-07 9.91e-08 1.53e-07 5.48e-08 1.45e-07 5.67e-08 1.55e-07 9.19e-08 1.45e-07 7.13e-08 5.91e-08 7.36e-08 4.09e-08 1.33e-07 6.07e-08 4.21e-08 1.21e-07 1.24e-07 1.45e-07 3.03e-08 1.46e-07 1.21e-07 1.07e-07 9.74e-08 1.12e-07 1e-07 9.92e-08 3.54e-08 4.02e-08 8.25e-08 7.66e-08 3.05e-08 5.59e-08 8.63e-08 6.54e-08 3.87e-08 4.64e-08 1.36e-07 4.87e-08 1.28e-08 3.41e-08 1.87e-08 1.19e-07 1.89e-09 4.81e-08
ENSG00000204842 ATXN2 679520 3.27e-07 1.59e-07 7e-08 2.31e-07 1.07e-07 8.85e-08 2.24e-07 5.84e-08 1.71e-07 1.11e-07 1.86e-07 1.48e-07 2.29e-07 8.44e-08 6.27e-08 9.6e-08 5.42e-08 2.04e-07 7.11e-08 6.16e-08 1.23e-07 1.76e-07 1.75e-07 4.17e-08 2.17e-07 1.51e-07 1.25e-07 1.36e-07 1.37e-07 1.59e-07 1.26e-07 5.4e-08 4.27e-08 9.08e-08 3.36e-08 4.86e-08 6.04e-08 6.11e-08 6.62e-08 5.35e-08 5.48e-08 1.59e-07 2.28e-08 7.26e-09 5.49e-08 9.44e-09 7e-08 0.0 4.74e-08
ENSG00000213152 RPL7AP60 -23467 2.66e-05 2.83e-05 5.65e-06 1.41e-05 5.23e-06 1.29e-05 3.74e-05 4.46e-06 2.64e-05 1.37e-05 3.47e-05 1.48e-05 4.46e-05 1.27e-05 6.59e-06 1.59e-05 1.48e-05 2.25e-05 7.56e-06 6.6e-06 1.35e-05 2.83e-05 2.67e-05 7.95e-06 3.79e-05 7.42e-06 1.26e-05 1.15e-05 2.83e-05 2.25e-05 1.76e-05 1.64e-06 2.75e-06 6.84e-06 1.01e-05 5.34e-06 3.17e-06 3.11e-06 4.54e-06 3.36e-06 1.77e-06 3.4e-05 3.21e-06 3.62e-07 2.34e-06 3.66e-06 4.04e-06 1.58e-06 1.5e-06
ENSG00000234608 MAPKAPK5-AS1 436294 1.13e-06 7.46e-07 1.87e-07 4.32e-07 1.38e-07 3.36e-07 6.29e-07 2.21e-07 6.62e-07 3.11e-07 1.1e-06 5.35e-07 9.97e-07 1.98e-07 3.35e-07 3.68e-07 5.63e-07 4.4e-07 3.5e-07 2.73e-07 2.39e-07 5.49e-07 4.66e-07 2.92e-07 1.14e-06 2.64e-07 4.71e-07 3.89e-07 5.03e-07 8.5e-07 4.02e-07 3.72e-08 1.05e-07 1.71e-07 3.38e-07 3.02e-07 1.97e-07 1.36e-07 7.54e-08 2.22e-08 8.42e-08 7.53e-07 5.58e-08 1.23e-08 1.69e-07 4.28e-08 1.46e-07 5.73e-08 9.32e-08