Genes within 1Mb (chr12:111702605:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -139623 eQTL 1.50e-56 -0.294 0.0173 0.0 0.0 0.151
ENSG00000089169 RPH3A -867775 eQTL 4.23e-02 -0.0802 0.0395 0.0 0.0 0.151
ENSG00000089234 BRAP 16649 pQTL 3.83e-02 -0.0397 0.0192 0.0 0.0 0.157
ENSG00000089248 ERP29 -310743 eQTL 2.13e-07 -0.0891 0.0171 0.0 0.0 0.151
ENSG00000111249 CUX2 668440 eQTL 3.82e-02 0.0689 0.0332 0.00119 0.0 0.151
ENSG00000111252 SH2B3 296657 pQTL 1.28e-08 -0.107 0.0187 0.00337 0.00328 0.157
ENSG00000111275 ALDH2 -64282 pQTL 8.61e-04 -0.113 0.0338 0.0 0.0 0.157
ENSG00000122986 HVCN1 997655 eQTL 9.05e-02 -0.0307 0.0181 0.00111 0.0 0.151
ENSG00000173064 HECTD4 -679834 eQTL 1.13e-32 0.217 0.0175 0.0 0.0 0.151
ENSG00000198270 TMEM116 -310580 eQTL 5.71e-15 0.177 0.0223 0.0 0.0 0.151
ENSG00000198324 PHETA1 333484 eQTL 2.11e-16 0.204 0.0243 0.0 0.0 0.151
ENSG00000204842 ATXN2 102929 eQTL 2.05e-02 0.0412 0.0177 0.0 0.0 0.151
ENSG00000213152 RPL7AP60 -600058 eQTL 4.20e-02 -0.101 0.0494 0.0 0.0 0.151
ENSG00000257595 LINC02356 333323 eQTL 1.18e-05 0.187 0.0424 0.0 0.0 0.151
ENSG00000274227 AC073575.2 -316825 eQTL 5.28e-02 -0.0977 0.0504 0.00123 0.0 0.151


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -139623 4.48e-06 4.28e-06 6.52e-07 2.73e-06 1.12e-06 1.27e-06 3.02e-06 8.04e-07 3.4e-06 1.67e-06 4.65e-06 3.39e-06 6.3e-06 1.18e-06 8.74e-07 2.69e-06 2.02e-06 2.74e-06 1.35e-06 9.54e-07 2.91e-06 3.97e-06 3.4e-06 1.81e-06 6.44e-06 1.38e-06 1.79e-06 1.49e-06 3.8e-06 2.91e-06 1.94e-06 5.42e-07 6.22e-07 1.3e-06 2.2e-06 9.4e-07 8.57e-07 4.3e-07 1.09e-06 3.28e-07 3.75e-07 5.65e-06 3.83e-07 1.67e-07 5.92e-07 3.38e-07 9.63e-07 4.1e-07 1.53e-07
ENSG00000089248 ERP29 -310743 1.26e-06 5.74e-07 1.2e-07 5.51e-07 9.93e-08 3.36e-07 6.33e-07 1.01e-07 5.49e-07 2.72e-07 1.08e-06 4.94e-07 9.77e-07 1.23e-07 1.68e-07 2.89e-07 4.3e-07 4.44e-07 3.5e-07 2.68e-07 2.53e-07 5.11e-07 4.74e-07 3.29e-07 1.54e-06 2.34e-07 3.1e-07 2.73e-07 5.16e-07 6.47e-07 3.43e-07 3.77e-08 5.39e-08 1.69e-07 3.42e-07 1.09e-07 1.89e-07 1.06e-07 6.81e-08 8.8e-09 2.86e-07 7.7e-07 4.53e-08 8.1e-08 1.88e-07 1.25e-08 1.41e-07 3.79e-08 5.13e-08
ENSG00000111249 CUX2 668440 2.69e-07 1.1e-07 3.72e-08 2.05e-07 9.21e-08 9.76e-08 1.44e-07 5.33e-08 1.4e-07 4.4e-08 1.6e-07 7.78e-08 1.41e-07 6.21e-08 5.55e-08 7.26e-08 3.88e-08 1.21e-07 5.75e-08 4.16e-08 1.08e-07 1.23e-07 1.34e-07 3.23e-08 1.37e-07 1.16e-07 1.11e-07 9.32e-08 1.05e-07 1.11e-07 9.73e-08 2.9e-08 3.16e-08 8.25e-08 6.67e-08 3.93e-08 5.3e-08 9.3e-08 6.54e-08 3.8e-08 5.28e-08 1.31e-07 3.99e-08 1.93e-08 3.81e-08 1.83e-08 1.21e-07 3.83e-09 5.09e-08
ENSG00000122986 HVCN1 997655 2.66e-07 1.08e-07 3.39e-08 1.78e-07 9.91e-08 9.32e-08 1.39e-07 5.21e-08 1.36e-07 4.23e-08 1.63e-07 7.58e-08 1.27e-07 6.07e-08 4.89e-08 7.87e-08 5.1e-08 1.07e-07 5.2e-08 3.88e-08 1.06e-07 1.33e-07 1.29e-07 4.67e-08 1.29e-07 1.13e-07 1.13e-07 8.45e-08 9.97e-08 1.09e-07 9.75e-08 4.1e-08 2.74e-08 8.21e-08 9.24e-08 3.97e-08 4.89e-08 9.44e-08 8.3e-08 3.05e-08 4.46e-08 1.39e-07 4.01e-08 1.08e-08 7.79e-08 1.74e-08 1.27e-07 4.26e-09 4.85e-08
ENSG00000173064 HECTD4 -679834 2.69e-07 1.1e-07 3.54e-08 2.01e-07 9.01e-08 9.8e-08 1.42e-07 5.33e-08 1.4e-07 4.4e-08 1.6e-07 7.78e-08 1.41e-07 6.21e-08 5.4e-08 7.26e-08 4.48e-08 1.18e-07 5.82e-08 4.1e-08 1.08e-07 1.23e-07 1.34e-07 3.49e-08 1.37e-07 1.16e-07 1.11e-07 9.15e-08 1.05e-07 1.12e-07 9.73e-08 3.1e-08 3.3e-08 8.34e-08 7.02e-08 3.76e-08 5.45e-08 9.26e-08 6.54e-08 3.76e-08 5.8e-08 1.31e-07 4.04e-08 1.9e-08 3.42e-08 1.83e-08 1.19e-07 3.83e-09 4.73e-08
ENSG00000198270 TMEM116 -310580 1.26e-06 5.74e-07 1.22e-07 5.65e-07 9.93e-08 3.36e-07 6.33e-07 1.01e-07 5.49e-07 2.72e-07 1.08e-06 4.94e-07 9.77e-07 1.23e-07 1.68e-07 2.89e-07 4.54e-07 4.44e-07 3.5e-07 2.68e-07 2.53e-07 5.11e-07 4.74e-07 3.29e-07 1.54e-06 2.34e-07 3.1e-07 2.73e-07 5.16e-07 6.47e-07 3.43e-07 3.77e-08 5.39e-08 1.69e-07 3.42e-07 1.09e-07 1.89e-07 1.06e-07 6.81e-08 8.8e-09 2.86e-07 7.7e-07 4.53e-08 8.1e-08 1.88e-07 1.25e-08 1.41e-07 3.79e-08 5.13e-08
ENSG00000198324 PHETA1 333484 1.01e-06 4.24e-07 1e-07 3.44e-07 1.1e-07 3.28e-07 5.82e-07 8.17e-08 3.94e-07 2.16e-07 9e-07 3.62e-07 7.71e-07 1.01e-07 1.24e-07 2.1e-07 2.53e-07 4.11e-07 2.79e-07 2.02e-07 2.61e-07 3.92e-07 4e-07 2.6e-07 1.2e-06 2.57e-07 2.52e-07 2.44e-07 3.99e-07 4.72e-07 2.55e-07 4.21e-08 5.42e-08 1.5e-07 3.46e-07 6.94e-08 1.31e-07 9.71e-08 4.37e-08 2.28e-08 1.97e-07 6.15e-07 2.8e-08 6.48e-08 1.69e-07 1.78e-08 1.08e-07 2.28e-08 5.44e-08
ENSG00000213152 RPL7AP60 -600058 2.67e-07 1.16e-07 4.08e-08 2.26e-07 9.24e-08 9.05e-08 1.53e-07 5.19e-08 1.44e-07 4.74e-08 1.55e-07 8.59e-08 1.47e-07 6.38e-08 5.84e-08 7.37e-08 3.94e-08 1.27e-07 6.32e-08 4.89e-08 1.22e-07 1.27e-07 1.45e-07 2.91e-08 1.5e-07 1.21e-07 1.06e-07 9.57e-08 1.12e-07 1.07e-07 9.64e-08 3.55e-08 3.61e-08 8.56e-08 3.52e-08 3.6e-08 5.35e-08 8.61e-08 6.63e-08 3.82e-08 6.21e-08 1.35e-07 4.7e-08 1.06e-08 3.32e-08 1.83e-08 1.18e-07 1.88e-09 4.79e-08
ENSG00000229186 \N -196658 2.13e-06 1.5e-06 2.51e-07 1.84e-06 4.92e-07 8.22e-07 1.29e-06 4.1e-07 1.71e-06 7.11e-07 1.83e-06 1.36e-06 2.58e-06 3.26e-07 4.98e-07 1.06e-06 1.12e-06 1.34e-06 5.52e-07 5.9e-07 7.78e-07 1.95e-06 1.56e-06 1.02e-06 3.25e-06 1.1e-06 1.02e-06 8.53e-07 1.75e-06 1.31e-06 8.83e-07 2.2e-07 2.76e-07 5.89e-07 1.01e-06 4.82e-07 7.32e-07 3.43e-07 5.03e-07 2.27e-07 3.05e-07 2.7e-06 4.15e-07 1.99e-07 3.06e-07 1.23e-07 5.13e-07 2.54e-07 1.82e-07