Genes within 1Mb (chr1:54442641:C:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -358682 sc-eQTL 3.16e-01 -0.181 0.18 0.059 PB L2
ENSG00000058799 YIPF1 552843 sc-eQTL 5.03e-01 -0.0851 0.127 0.059 PB L2
ENSG00000058804 NDC1 604178 sc-eQTL 9.57e-01 -0.0101 0.189 0.059 PB L2
ENSG00000081870 HSPB11 496712 sc-eQTL 2.91e-01 -0.168 0.158 0.059 PB L2
ENSG00000116133 DHCR24 -444554 sc-eQTL 3.54e-01 0.149 0.16 0.059 PB L2
ENSG00000116205 TCEANC2 389057 sc-eQTL 8.91e-03 0.503 0.189 0.059 PB L2
ENSG00000116209 TMEM59 389137 sc-eQTL 5.13e-01 -0.0533 0.0813 0.059 PB L2
ENSG00000116212 LRRC42 496556 sc-eQTL 4.03e-01 0.154 0.183 0.059 PB L2
ENSG00000116221 MRPL37 258600 sc-eQTL 6.31e-01 0.0712 0.148 0.059 PB L2
ENSG00000157216 SSBP3 29162 sc-eQTL 4.57e-01 -0.127 0.171 0.059 PB L2
ENSG00000162402 USP24 -772723 sc-eQTL 3.34e-01 0.188 0.193 0.059 PB L2
ENSG00000215883 CYB5RL 242605 sc-eQTL 9.97e-01 0.000844 0.201 0.059 PB L2
ENSG00000243725 TTC4 -273220 sc-eQTL 1.88e-01 -0.247 0.187 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116221 MRPL37 258600 eQTL 0.00348 0.0769 0.0262 0.00221 0.0 0.0554
ENSG00000157216 SSBP3 29162 eQTL 0.0225 -0.064 0.028 0.0 0.0 0.0554
ENSG00000198711 SSBP3-AS1 206201 eQTL 9.36e-03 -0.104 0.0399 0.0 0.0 0.0554
ENSG00000234810 AL603840.1 -886647 eQTL 0.0259 0.141 0.0633 0.0 0.0 0.0554


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000081870 \N 496712 5.59e-07 2.5e-07 1.14e-07 3.81e-07 1.07e-07 1.26e-07 3.33e-07 5.84e-08 2.26e-07 1.15e-07 1.96e-07 1.48e-07 2.74e-07 8.26e-08 1.18e-07 1.14e-07 5.42e-08 2.75e-07 1.13e-07 7.05e-08 1.35e-07 2.06e-07 1.89e-07 7.22e-08 3.41e-07 1.71e-07 1.85e-07 1.54e-07 1.4e-07 1.89e-07 1.43e-07 8.32e-08 3.65e-08 1.01e-07 1.56e-07 5.7e-08 5.62e-08 6.46e-08 4.82e-08 7.28e-08 5.39e-08 2.71e-07 4.53e-08 5.83e-09 1.16e-07 8.94e-09 7.61e-08 0.0 4.61e-08