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Genes within 1Mb (chr1:53687648:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -202150 sc-eQTL 8.69e-01 -0.0373 0.226 0.946 pDC L2
ENSG00000058804 NDC1 -150815 sc-eQTL 9.27e-01 0.0206 0.225 0.946 pDC L2
ENSG00000081870 HSPB11 -258281 sc-eQTL 4.71e-01 0.143 0.198 0.946 pDC L2
ENSG00000116171 SCP2 760372 sc-eQTL 8.39e-01 0.0428 0.21 0.946 pDC L2
ENSG00000116205 TCEANC2 -365936 sc-eQTL 2.49e-01 -0.252 0.217 0.946 pDC L2
ENSG00000116209 TMEM59 -365856 sc-eQTL 6.63e-01 0.0761 0.174 0.946 pDC L2
ENSG00000116212 LRRC42 -258437 sc-eQTL 2.80e-01 0.234 0.216 0.946 pDC L2
ENSG00000116221 MRPL37 -496393 sc-eQTL 5.49e-01 0.139 0.231 0.946 pDC L2
ENSG00000121310 ECHDC2 760436 sc-eQTL 3.22e-01 -0.225 0.227 0.946 pDC L2
ENSG00000157184 CPT2 490856 sc-eQTL 7.07e-01 0.0821 0.218 0.946 pDC L2
ENSG00000157193 LRP8 359179 sc-eQTL 6.72e-01 0.082 0.193 0.946 pDC L2
ENSG00000157216 SSBP3 -725831 sc-eQTL 6.67e-01 -0.0888 0.206 0.946 pDC L2
ENSG00000162377 COA7 989301 sc-eQTL 2.06e-01 -0.236 0.186 0.946 pDC L2
ENSG00000162378 ZYG11B 961195 sc-eQTL 3.37e-01 0.216 0.225 0.946 pDC L2
ENSG00000162384 CZIB 467014 sc-eQTL 3.01e-01 0.234 0.225 0.946 pDC L2
ENSG00000162385 MAGOH 449130 sc-eQTL 8.45e-01 0.0397 0.203 0.946 pDC L2
ENSG00000162390 ACOT11 -854609 sc-eQTL 3.64e-01 -0.0786 0.0863 0.946 pDC L2
ENSG00000215883 CYB5RL -512388 sc-eQTL 1.28e-01 -0.303 0.198 0.946 pDC L2
ENSG00000230138 LINC02812 319403 sc-eQTL 3.32e-01 -0.151 0.155 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058799 YIPF1 -202150 eQTL 4.09e-02 0.0415 0.0202 0.0 0.0 0.0329
ENSG00000157193 LRP8 359578 eQTL 0.0313 0.118 0.0547 0.0 0.0 0.0329
ENSG00000215883 CYB5RL -512388 eQTL 0.00484 0.141 0.0499 0.0 0.0 0.0329
ENSG00000230138 AC119428.2 319403 eQTL 0.00024 0.26 0.0706 0.00701 0.00389 0.0329

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000215883 CYB5RL -512388 7.3e-07 3.12e-07 7.6e-08 2.66e-07 1.02e-07 1.54e-07 4.09e-07 7.12e-08 2.26e-07 1.39e-07 3.32e-07 2.09e-07 4.54e-07 9.15e-08 1.01e-07 1.17e-07 1.18e-07 2.9e-07 9.71e-08 7.49e-08 1.34e-07 2.3e-07 2.48e-07 7.22e-08 4.46e-07 1.9e-07 1.57e-07 1.52e-07 2.11e-07 3.52e-07 1.88e-07 5.38e-08 4.96e-08 1.15e-07 1.31e-07 3.57e-08 6.2e-08 6.11e-08 6.08e-08 7.53e-08 3.6e-08 2.91e-07 3.19e-08 1.55e-08 6.21e-08 8.42e-09 8.94e-08 0.0 4.47e-08