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Genes within 1Mb (chr1:53247055:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -642743 sc-eQTL 6.42e-01 0.102 0.219 0.051 pDC L2
ENSG00000058804 NDC1 -591408 sc-eQTL 4.04e-01 -0.182 0.218 0.051 pDC L2
ENSG00000081870 HSPB11 -698874 sc-eQTL 6.16e-01 -0.0963 0.192 0.051 pDC L2
ENSG00000116157 GPX7 644684 sc-eQTL 2.80e-01 0.183 0.169 0.051 pDC L2
ENSG00000116171 SCP2 319779 sc-eQTL 1.26e-01 0.311 0.202 0.051 pDC L2
ENSG00000116205 TCEANC2 -806529 sc-eQTL 5.05e-01 0.141 0.211 0.051 pDC L2
ENSG00000116209 TMEM59 -806449 sc-eQTL 4.26e-01 -0.135 0.169 0.051 pDC L2
ENSG00000116212 LRRC42 -699030 sc-eQTL 1.01e-01 -0.344 0.209 0.051 pDC L2
ENSG00000116221 MRPL37 -936986 sc-eQTL 6.07e-01 -0.116 0.224 0.051 pDC L2
ENSG00000121310 ECHDC2 319843 sc-eQTL 5.48e-01 -0.133 0.22 0.051 pDC L2
ENSG00000134744 TUT4 693568 sc-eQTL 8.01e-01 0.0461 0.182 0.051 pDC L2
ENSG00000134748 PRPF38A 842453 sc-eQTL 6.77e-01 0.0977 0.234 0.051 pDC L2
ENSG00000154222 CC2D1B 880862 sc-eQTL 7.61e-01 0.068 0.224 0.051 pDC L2
ENSG00000157184 CPT2 50263 sc-eQTL 4.59e-01 -0.157 0.211 0.051 pDC L2
ENSG00000157193 LRP8 -81414 sc-eQTL 7.09e-01 -0.07 0.187 0.051 pDC L2
ENSG00000162377 COA7 548708 sc-eQTL 8.32e-01 0.0385 0.181 0.051 pDC L2
ENSG00000162378 ZYG11B 520602 sc-eQTL 9.83e-02 0.36 0.216 0.051 pDC L2
ENSG00000162384 CZIB 26421 sc-eQTL 6.58e-01 0.097 0.219 0.051 pDC L2
ENSG00000162385 MAGOH 8537 sc-eQTL 8.58e-01 -0.0352 0.196 0.051 pDC L2
ENSG00000215883 CYB5RL -952981 sc-eQTL 1.51e-01 0.277 0.192 0.051 pDC L2
ENSG00000230138 LINC02812 -121190 sc-eQTL 6.08e-01 0.0775 0.151 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116171 SCP2 319779 eQTL 0.0255 -0.0842 0.0376 0.0 0.0 0.0451
ENSG00000121310 ECHDC2 319843 eQTL 0.00435 -0.118 0.0414 0.0 0.0 0.0451
ENSG00000162383 SLC1A7 104423 eQTL 0.00162 -0.204 0.0647 0.0 0.0 0.0451
ENSG00000162385 MAGOH 8537 eQTL 0.0249 -0.0638 0.0284 0.0 0.0 0.0451

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina